KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:10 2014 Check: 00 .. Name: ENSTTRP00000001638/1-408 Len: 408 Check: 1452 Weight: 1.00 Name: ENSP00000223459/1-276 Len: 408 Check: 9372 Weight: 1.00 Name: ENSBTAP00000024083/1-238 Len: 408 Check: 63 Weight: 1.00 Name: bmy_00749T0/1-276 Len: 408 Check: 9000 Weight: 1.00 Name: BACU011936/1-276 Len: 408 Check: 8575 Weight: 1.00 // 1 50 ENSTTRP00000001638/1-408 MAPPPAPLPA REPNGAGRQW GTPESLSFAD VAVYFSPEEW GCLRPAQRAL ENSP00000223459/1-276 MAPPPAPLLA PRPGETRPGC RKPGTVSFAD VAVYFSPEEW GCLRPAQRAL ENSBTAP00000024083/1-238 MAPPPAPLLV LRPGETGPGC KKPLAVRFAD VAVYFSPEEW GCLRPAQRAL bmy_00749T0/1-276 MAPPPAPLLV LRPGETGPDC KKPAAVSFAD VAVYFSLEEW GCLRPAQRAL BACU011936/1-276 MAPPPAPLLV LRPGETGPDC KKPAAVSFAD VAVYFSVEEW GCLRPAQRAL 51 100 ENSTTRP00000001638/1-408 YRDVMRETYG HLGALGFRGT KPALISWVEE EAELWGPDAR DPETGECLRE ENSP00000223459/1-276 YRDVMQETYG HLGALGFPGP KPALISWMEQ ESEAWSPAAQ DPEKGERLGG ENSBTAP00000024083/1-238 YRDVMQETYG HLGALG---- ---------- ---------- ---------- bmy_00749T0/1-276 YRDVMRETYG HLGALGFPGP KPALISWMEQ ESEAWSPAAQ DPEKGESLGG BACU011936/1-276 YRDVMRETYG HLGALGFPGP KPALISWMEQ ESEAWSPAAQ DPEEGESLGG 101 150 ENSTTRP00000001638/1-408 ADTAGSRDKE EKGQREGTEA LGKILSVDAQ PPGLTALKPF SAGFSYGWEQ ENSP00000223459/1-276 ARRGDVPNRK EEEPEEVP-- ---------- ---------- ------RAKG ENSBTAP00000024083/1-238 ----ATPNKK EEEPEAGL-- ---------- ---------- ------GAKS bmy_00749T0/1-276 ALRGDXPNKK EEEPETGP-- ---------- ---------- ------GAKE BACU011936/1-276 ALRGDVPNKK EEEPETGP-- ---------- ---------- ------GAKE 151 200 ENSTTRP00000001638/1-408 PSKVPRRGRP PLCAHPPVPR ADQRHGCYMC GKSFAWRSTL VEHLYTHTGE ENSP00000223459/1-276 PRKAPVKESP ---------- ---------- -------EVL VER------- ENSBTAP00000024083/1-238 PRKAPGKERP ---------- ---------- -------EEL VKH------- bmy_00749T0/1-276 SKKTPGKERP ---------- ---------- -------EEL VKN------- BACU011936/1-276 SKKTPGKERP ---------- ---------- -------EEL VKN------- 201 250 ENSTTRP00000001638/1-408 KPFSCPDCGK GFSQASSLSK HRAIHRGERP HRCPDCDRAF TQRSALTTHL ENSP00000223459/1-276 ---------- --NPDPAISV APA--RAQPP KNAA-WDPT- ---------- ENSBTAP00000024083/1-238 ---------- --NPGTTVSK TSA--RAQAP RQAV-WDQG- ---------- bmy_00749T0/1-276 ---------- --NLDSTISE TSA--RAQPP RKAA-CDQS- ---------- BACU011936/1-276 ---------- --NLDSNISE TSS--RAQPP RKAA-CDQS- ---------- 251 300 ENSTTRP00000001638/1-408 RVHTGEKPYS CADCGRCFSQ SSALYQHQRV HSGETPFPCP DCGRAFAHAS ENSP00000223459/1-276 ---TGAQP-- ---------- ---------- -----PAPIP SMD---AQAG ENSBTAP00000024083/1-238 ---AGAQS-- ---------- ---------- -----PAPVP SAD---AQAS bmy_00749T0/1-276 ---TGAQP-- ---------- ---------- -----PVLVP SVD---AQAS BACU011936/1-276 ---AGAQP-- ---------- ---------- -----PVLVP SVD---AQAS 301 350 ENSTTRP00000001638/1-408 DLRRHVRTHT GEKPYPCPDC GRCFRQSSEM AAHRRTHSGE RPYACPQCGR ENSP00000223459/1-276 Q-RRHV---- ------CTDC GRRFTYPSLL VSHRRMHSGE RPFPCPECGM ENSBTAP00000024083/1-238 Q-RRHV---- ------CADC GRRFTYPSLL VSHRRMHSGE RPFPCPECGM bmy_00749T0/1-276 Q-RRHV---- ------CADC GRRFTYPSLL VSHRRMHSGE RPFPCPECGM BACU011936/1-276 Q-RRHV---- ------CADC GRRFTYPSLL VSHRRMHSGE RPFPCPECGM 351 400 ENSTTRP00000001638/1-408 CFGQKSAMAK HQWVHRPGAG RRRGRGASGL PVPLASGRGD LDPPVGFQHY ENSP00000223459/1-276 RFKRKFAVEA HQWIHRSCSG GRRGRRPGIR AVPRAPVRGD RDPPVLFRHY ENSBTAP00000024083/1-238 RFKRKFAVEA HQWIHRSCSG GRRGRRPGIR AVPRAPVRGD RDPPVLFRHY bmy_00749T0/1-276 RFKRKFAVEA HQWIHRSCSG GRRGRRPGIR AVPRAPVRGD RDPPVLFRHY BACU011936/1-276 RFKRKFAVEA HQWIHRSCSG GRRGRRPGIR AVPRAPVRGD RDPPVLFRHY 401 450 ENSTTRP00000001638/1-408 PEIFQECG ENSP00000223459/1-276 PDIFEECG ENSBTAP00000024083/1-238 PDIFEECG bmy_00749T0/1-276 PDIFEECG BACU011936/1-276 PDIFEECG