KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:22:18 2014 Check: 00 .. Name: ENSP00000267257/1-605 Len: 1161 Check: 4878 Weight: 1.00 Name: ENSBTAP00000024101/1-586 Len: 1161 Check: 4709 Weight: 1.00 Name: bmy_05741T0/1-1085 Len: 1161 Check: 7513 Weight: 1.00 Name: BACU003460/1-1021 Len: 1161 Check: 1909 Weight: 1.00 // 1 50 ENSP00000267257/1-605 -----MDDLD ALLADLESTT SHISKRPVFL SEETPYSYPT GNHTYQEIAV ENSBTAP00000024101/1-586 ---------- ALLADLESTT SHISKRPVFL SEETPYSYPT GNHTYQEIAV bmy_05741T0/1-1085 TRSPRPLSAD ALLADLESTT SHISKRPVFL SEETPYSYPT GNHTYQEIAV BACU003460/1-1021 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000267257/1-605 PPPVPPPPSS EALNGTILDP LDQWQPSSSR FIHQQPQSSS PVYGSSAKTS ENSBTAP00000024101/1-586 -PPVPPPPSS EALNGSVLDP LDPWPPSTSR FTHQQPQSSS PVYGSSAKTS bmy_05741T0/1-1085 PPPVPPPPSS EALNGTVLDP LDQWQPSTSR FIHQQPPSPS PVYGSSAKTS BACU003460/1-1021 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000267257/1-605 SVSNPQDSVG SPCSRVGEEE HVYSFPNKQK SAEPSPTVMS TSLGSNLSEL ENSBTAP00000024101/1-586 SASNPQDGGG PPCPRAGEED HVYSFPNKQK SAEPSPTVMS SSLGSNLSEL bmy_05741T0/1-1085 SASNPQDGIG LPCPRAGEEE HVYSFPNKQK SAEPSPTVMS SSLGSNLSEL BACU003460/1-1021 ---------- ---------- ---------- --------MS SSLGSNLSEL 151 200 ENSP00000267257/1-605 DRLLLELNAV QHNPPGFPAD EANSSPPLPG ALSPLYGVPE TNSPLGGKAG ENSBTAP00000024101/1-586 DRLLLELNAV QHNPPGFPAD EANSSPPLPG PLSTHYGVPE NNSLLGGKAG bmy_05741T0/1-1085 DRLLLELNAV QHNPPGFPAD EANSSPPLPG ALSPHYGIPE NNSPLGVKAG BACU003460/1-1021 DRLLLELNAV QHNPPGFPAD EANSSPPLPG ALSPHYGIPE NNSPLGVKAG 201 250 ENSP00000267257/1-605 PLTKEKPKRN GGRGLEDVRP SVESLLDELE SSVPSPVPAI TVNQGEMSSP ENSBTAP00000024101/1-586 ALTKEKPKRN GGRGLEDLRP SVENLLDELE SSVPSPVPTI TVNQGEMSSP bmy_05741T0/1-1085 PLTKEKPKRN GGRGLEDVRP SVESLLDELE SSVPSPVPAI TVNQGEMSSP BACU003460/1-1021 PLTKEKPKRN GGRGLEDVRP SVESLLDELE SSVPSPVPAI TVNQGEMSSP 251 300 ENSP00000267257/1-605 QRVTSTQQQT RISASSATRE LDELMASLSD FKGS------ ---------- ENSBTAP00000024101/1-586 QRVTSSQQQT RISASSATRE LDELMASLSD LSK------- ---------- bmy_05741T0/1-1085 QRVTSSQQQT RISASSATRE LDELMASLSD FKTSSSAVAL SSPRLLPNSA BACU003460/1-1021 QRVTSSQQQT RISASSATRE LDELMASLSD FKTSSSAVAL SSPRLLPNSA 301 350 ENSP00000267257/1-605 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 PSPHHILSPP PPPPGPSVFL PPPRKPSPRG HGHTLEVLCT EDNVAPSWLD BACU003460/1-1021 PSPHHILSPP PPPPGPSVFL PPPRKPSPRG HGHTLEVLCA EDNVAPSWLD 351 400 ENSP00000267257/1-605 ---------- ---------- ---------- ---WPLEEVV LLVSISSSVQ ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 LAGLGEMPDT PNSRSPSRES SLGPLGAESQ ARVWRDPPNA SLVSELSRVP BACU003460/1-1021 LAGLGEMPDT PNSRSPSTES SLGPLGAESQ ARVWRDPPNA SLVSELSRVP 401 450 ENSP00000267257/1-605 EGEKYPH--- ---------- ---------- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 PGHTLPHAGC TGPQEAGEPQ VLSANPLCPG EAVAATWEWP WALEALRPES BACU003460/1-1021 PGHTLPHAGC TGPQEAGEPQ VLSANPLCPG EAVAATWEWP WALEALRPEF 451 500 ENSP00000267257/1-605 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 PRGATPSFQE VIEPAAMAVD RQAIFPDTWS LTKARGQQKE RARPEPGEPE BACU003460/1-1021 PWGAMPSFQE VIEPATMAVD RQAIFPDTWS LTKARGQQKE RARPEPGEPE 501 550 ENSP00000267257/1-605 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 SRCPAPVEEE QLGGETPTVG SLVRPAQGPE TPRRPEGTTE AAAEARRERS BACU003460/1-1021 SRCPAPVEEE QLGGETPTVG SLVRPAQGPE TPRRPEGTTE AAAEARRERP 551 600 ENSP00000267257/1-605 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 ELPQAVVVDT PNTTERISTS GQAGIRSMIR RSRETGHAHP MSREPSPRRR BACU003460/1-1021 ELPQAVVVDT PNTTERISTS GQ--IRSMIR RSRETGHAHP MSREPSPRRR 601 650 ENSP00000267257/1-605 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 LDPATLSRTP SQERLIAELQ GRLGIQPEVE EAEGAAGASA EDWLTEGVVI BACU003460/1-1021 LDPATLSRTP SQERLIAELQ GPLGIQPEVE EAEGATGASA EDWLTEGVVI 651 700 ENSP00000267257/1-605 ---PCAAR-- ---------- ---------- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 TVQPCGRRAR GQLVEKVVSR CPGLGQGGGP PVLPQQRPEG KFGVWGGPAS BACU003460/1-1021 TVQPCGRRAR GQLVEKVVSR CPGLGQGGGP PVLPQQRPEG KFGMWGGPAS 701 750 ENSP00000267257/1-605 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 RGLVRPASLL VPEWEGPREP LLAELMFPPP LPSSLSLSSS SQVVFPPGSP BACU003460/1-1021 RGLVRPASLL VPEWEGPREP LLAELMFPPP LPSSLSLSSS SQVVFPPGSP 751 800 ENSP00000267257/1-605 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- ---------- bmy_05741T0/1-1085 IPLRRTFSVL PSPPPPSPLL QHRKDASASS SSPRPSPPTS STLGPSALPR BACU003460/1-1021 IPLRRTFSVL PSPPPPSPLL QHRKDASASS SSPRPSPPTS STLGPSALPR 801 850 ENSP00000267257/1-605 ---------- -HRTPSLRSP DQPPPCPQ-- ---------- ---------- ENSBTAP00000024101/1-586 ---------- ---------- ---------- ---------- -------IQD bmy_05741T0/1-1085 GPPGVQSAGA GPREDGVQGP TPPTPAPHS- ---------- -------IQG BACU003460/1-1021 GPLGAQSAGE GPREDGVQGP TPPTPAPHSV RSMGCQTDED PLFPPMQIQG 851 900 ENSP00000267257/1-605 ---------- ---------- ---------- -FMAQGKTGS SSPPGGPPKP ENSBTAP00000024101/1-586 LEQRADGELC WAAGWPLNGR QSGPEGQDMG GFMAQGKTGS SSPPGGPPKP bmy_05741T0/1-1085 LEQRADGELC WAAGWPPNGS QSSSEGQDEG GFMAQGKTGS SSPPGGPPKP BACU003460/1-1021 LEQRADGELC WAASWPPNGS QSSPEGQDEG GFMAQGKTGS SSPPGGPPKP 901 950 ENSP00000267257/1-605 GSQLDSMLGS LQSDLNKLGV ATVAKGVCGA CKKPIAGQVV TAMGKTWHPE ENSBTAP00000024101/1-586 GSQLDSMLGS LQSDLNKLGV ATVAKGVCGA CKKPIAGQVV TAMGKTWHPE bmy_05741T0/1-1085 GSQLDSMLGS LQSDLNKLGV ATVAKGVCGA CKKPIAGQ-- ---------- BACU003460/1-1021 GSQLDSMLGS LQSDLNKLGV ATVAKGVCGA CKKPIAGQVV TAMGKTWHPE 951 1000 ENSP00000267257/1-605 HFVCTHCQEE IGSRNFFERD GQPYCEKDYH NLFSPRCYYC NGPILDKVVT ENSBTAP00000024101/1-586 HFVCTHCQEE IGSRNFFERD GQPYCEKDYH NLFSPRCYYC NGPILDKVVT bmy_05741T0/1-1085 ---------- ---------- ---------- ---------- ------KVVT BACU003460/1-1021 HFVCTHCQEE IGSRNFFERD GQPYCEKDYH NLFSPRCYYC NGPILDKVVT 1001 1050 ENSP00000267257/1-605 ALDRTWHPEH FFCAQCGAFF GPEGFHEKDG KAYCRKDYFD MFAPKCGGCA ENSBTAP00000024101/1-586 ALDRTWHPEH FFCAQCGAFF GPEGFHEKDG KAYCRKDYFD MFAPKCGGCA bmy_05741T0/1-1085 ALDRTWHPEH FFCAQCGAFF GPEGFHEKDG KAYCRKDYFD MFAPKCGGCA BACU003460/1-1021 ALDRTWHPEH FFCAQCGAFF GPEGFHEKDG KAYCRKDYFD MFAPKCGGCA 1051 1100 ENSP00000267257/1-605 RAILENYISA LNTLWHPECF VCRECFTPFV NGSFFEHDGQ PYCEVHYHER ENSBTAP00000024101/1-586 RAILENYISA LNTLWHPECF VCRECFTPFV HGSFFEHEGQ PYCEAHYHER bmy_05741T0/1-1085 RAILENYISA LNTLWHPECF VCRECFTPFV NGSFFEHDGQ PYCEVHYHER BACU003460/1-1021 RAILENYISA LNTLWHPECF VCRECFTPFV NGSFFEHDGQ PYCEVHYHER 1101 1150 ENSP00000267257/1-605 RGSLCSGCQK PITGRCITAM AKKFHPEHFV CAFCLKQLNK GTFKEQNDKP ENSBTAP00000024101/1-586 RGSLCSGCQK PITGRCITAM AKKFHPEHFV CAFCLKQLNK GTFKEQNDKP bmy_05741T0/1-1085 RGSLCSGCQK PITGRCITAM AKKFHPEHFV CAFCLKQLNK GTFKEQNDKP BACU003460/1-1021 RGSLCSGCQK PITGRCITAM AKKFHPEHFV CAFCLKQLNK GTFKEQNDKP 1151 1200 ENSP00000267257/1-605 YCQNCFLKLF C ENSBTAP00000024101/1-586 YCQNCFLKLF C bmy_05741T0/1-1085 YCQNCFVKLF C BACU003460/1-1021 YCQNCFVKLF C