KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:22:19 2014 Check: 00 .. Name: bmy_10476T0/1-595 Len: 749 Check: 6200 Weight: 1.00 Name: ENSBTAP00000024105/1-528 Len: 749 Check: 340 Weight: 1.00 Name: BACU009968/1-492 Len: 749 Check: 3720 Weight: 1.00 Name: ENSTTRP00000007662/1-531 Len: 749 Check: 2040 Weight: 1.00 // 1 50 bmy_10476T0/1-595 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024105/1-528 ---------- ---------- ---------- ---------- ---------- BACU009968/1-492 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007662/1-531 LTLRTDVCLP SQGHVHPVGS VTVKFIPELL SVEEGGPRFV KTSSPRGEAK 51 100 bmy_10476T0/1-595 MNVSVAVPSA LGPGFTEPWP PCLVAGFSHS AFTFGIESHI SQSNINGTLV ENSBTAP00000024105/1-528 MSITSDEVNF LVYRYLQES- -----GFSHS AFTFGIESHI SQSNINGTLV BACU009968/1-492 MSITSDEVNF LVYRYLQES- -----GFSHS AFTFGIESHI SQSNINGTLV ENSTTRP00000007662/1-531 MSITSDEVNF LVYRYLQES- -----GFSHS AFTFGIESHI SQSNINGTLV 101 150 bmy_10476T0/1-595 PPAALISILQ KGLQYVEAEI SINEDGTVFD GRPIESLSLI DAVMPDVVQT ENSBTAP00000024105/1-528 PPAALISILQ KGLQYVEAEI SINEDGTVFD GRPIESLSLI DAVMPDVVQT BACU009968/1-492 PPAALISILQ KGLQYVEAEI SINE------ ---------- ---------- ENSTTRP00000007662/1-531 PPAALISILQ KGLQYVEAEI SINEDGTVFD GRPIESLSLI DAVMPDVVQT 151 200 bmy_10476T0/1-595 RQQAFREKLA QQQASVAATA AAAXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000024105/1-528 RQQAFREKLA QQQAAAAAAA AAAAAAAAAA ATTAAPAAAS QQNPPKNGEA BACU009968/1-492 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007662/1-531 RQQAFREKLA QQQASVAATA AAAAPAAP-- ---TAPAAVS QQNPPKNGEA 201 250 bmy_10476T0/1-595 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XLLGGAYEST SGVCFLRGGG ENSBTAP00000024105/1-528 TVNGEENGAH ---------- ---------- ---------- ---------- BACU009968/1-492 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007662/1-531 TVNGEENGAH ---------- ---------- ---------- ---------- 251 300 bmy_10476T0/1-595 GGFVLWGKTA TIQDLCLPLF PVTDNHSKPM EIDGDVEIPP NKATVLRGHE ENSBTAP00000024105/1-528 ---------- ---------- -AINNHSKPM EIDGDVEIPP SKATVLRGHE BACU009968/1-492 ---------- ---------- --VHNHSKPM EIDGDVEIPP NKATVLRGHE ENSTTRP00000007662/1-531 ---------- ---------- -AINNHSKPM EIDGDVEIPP NKATVLRGHE 301 350 bmy_10476T0/1-595 SEVFICAWNP VSDLLASGSG DSTARIWNLN ENSNGGSTQL VLRHCIREGG ENSBTAP00000024105/1-528 SEVFICAWNP VSDLLASGSG DSTARIWNLN ENSNGGSTQL VLRHCIREGG BACU009968/1-492 SEVFICAWNP VSDLLASGSG DSTARIWNLN ENSNGGSTQL VLRHCIREGG ENSTTRP00000007662/1-531 SEVFICAWNP VSDLLASGSG DSTARIWNLN ENSNGGSTQL VLRHCIREGG 351 400 bmy_10476T0/1-595 HDVPSNKDVT SLDWNSDGTL LATGSYDGFA RIWTEDGNLA STLGQHKGPI ENSBTAP00000024105/1-528 HDVPSNKDVT SLDWNSDGTL LATGSYDGFA RIWTEDGNLA STLGQHKGPI BACU009968/1-492 HDVPSNKDVT SLDWNSDGTL LATGSYDGFA RIWTED---- ---------- ENSTTRP00000007662/1-531 HDVPSNKDVT SLDWNSDGTL LATGSYDGFA RIWTEDGNLA STLGQHKGPI 401 450 bmy_10476T0/1-595 FALKWNKKGN YILSAGVDKT TIIWDAHTGE AKQQFPFHSA PALDVDWQNN ENSBTAP00000024105/1-528 FALKWNKKGN YILSAGVDKT TIIWDAHTGE AKQQFPFHSA PALDVDWQNN BACU009968/1-492 ---------- ---------- ---------- ---------A PALDVDWQNN ENSTTRP00000007662/1-531 FALKWNKKGN YILSAGVDKT TIIWDAHTGE AKQQFPFHSA PALDVDWQNN 451 500 bmy_10476T0/1-595 TAFASCSTDM CIHVCRLGSD RPVKTFQGHT NEVNAIKWDP SGMLLASCSD ENSBTAP00000024105/1-528 TTFASCSTDM CIHVCRLGCD RPVKTFQGHT NEVNAIKWDP SGMLLASCSD BACU009968/1-492 TAFASCSTDM CIHVCRLGSD RPVKTFQGHT NEVNAIKWDP SGMLLASCSD ENSTTRP00000007662/1-531 TTFASCSTDM CIHVCRLGCD RPVKTFQGHT NEVNAIKWDP SGMLLASCSD 501 550 bmy_10476T0/1-595 DMTLKIWSMK QDTCVHDLQA HSKEIYTIKW SPTGPATSNP NSNIMLASAS ENSBTAP00000024105/1-528 DMTLKIWSMK QDTCVHDLQA HSKEIYTIKW SPTGPATSNP NSSIMLASAS BACU009968/1-492 DMTLKIWSMK QDTCVHDLQA HSKEIYTIKW SPTGPATSNP NSSIMLASAS ENSTTRP00000007662/1-531 DMTLKIWSMK QDTCVHDLQA HSKEIYTIKW SPTGPATSNP NSNIMLASAS 551 600 bmy_10476T0/1-595 FDSTVRLWDV ERGVCIHTLT KHQEPVYSVA FSPDGKHLAS GSFDKCVHIW ENSBTAP00000024105/1-528 FDSTVRLWDV ERGVCLHTLT KHQEPVYSVA FSPDGKYLAS GSFDKCVHIW BACU009968/1-492 FDSTVRLWDV ERGFCIHTLT KHQEPVYSVA FSPDGKHLAS GSFDKCVHIW ENSTTRP00000007662/1-531 FDSTVRLWDV ERGVCIHTLT KHQEPVYSVA FSPDGKHLAS GSFDKCVHIW 601 650 bmy_10476T0/1-595 NTQSGSLVHS YRGTGGIFEV CWNARGDKVG ASASDGSVC- ---------- ENSBTAP00000024105/1-528 NTQSGSLVHS YRGTGGIFEV CWNARGDKVG ASASDGSVC- ---------- BACU009968/1-492 NTQSGSLVHS YRGTGGIFEV CWNARGDKVG ASASDGSVSS TRSFLGGGGL ENSTTRP00000007662/1-531 NTQ------- ---------- ---------- ---------- ---------- 651 700 bmy_10476T0/1-595 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024105/1-528 ---------- ---------- ---------- ---------- ---------- BACU009968/1-492 GGGDTRSRTP DTRGGFQRCG GLRGPQPVCV GEGNLWAATA SGSSRLSCFL ENSTTRP00000007662/1-531 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_10476T0/1-595 --VLDLRK-- ---------- ---------- ---------- --------- ENSBTAP00000024105/1-528 --VLDLRK-- ---------- ---------- ---------- --------- BACU009968/1-492 NDVFSVKLVV LSRGDSAPGG HLQCLEAFWL PPPWSGGYWH LVSGGQGCC ENSTTRP00000007662/1-531 ---------- ---------- ---------- ---------- ---------