KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:22:22 2014  Check: 00 ..

 Name: ENSBTAP00000024140/1-247  Len:    253  Check:  9021  Weight:  1.00
 Name: ENSTTRP00000011106/1-253  Len:    253  Check:  4332  Weight:  1.00
 Name: bmy_22296T0/1-253         Len:    253  Check:  5016  Weight:  1.00
 Name: BACU008213/1-253          Len:    253  Check:  4999  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000024140/1-247  MRAPLLPPAP VVLSLLIFGS AHYTAGLDVN DTYSGKGEPF SGDHSADRFE 
ENSTTRP00000011106/1-253  MRAPLLPPAP VVLSLLIFAS AHYTAGLDVN DTYSGKGEPL SGDHTADGFE 
bmy_22296T0/1-253         MRAPLLLPAP VVLSLLIFGS AHYTAGLDVN DTYSGKGKPF SGDHTADGFE 
BACU008213/1-253          MRAPLLLPAP VVLLLLIFGS AHYTAGLDVN DTYSGKGKPF SGDHTADGFE 


                          51                                                 100
ENSBTAP00000024140/1-247  VTSR------ SEISSASETP PGGELSSVID YDYAEEYDNE PQISGYIVDD 
ENSTTRP00000011106/1-253  VTSRSQMSSG SKISPESEMP SSSELSSGMD SDYAEEYDNE PQISGYIVDD 
bmy_22296T0/1-253         VISRSQMSSG SEISPASEMP SSSELSSGID SDYAEEYDNE PQISGYIVDD 
BACU008213/1-253          VTSRSQMSSG SEISPASEMP SSSELSSDID SDYAEEYDNE PQISGYIVDD 


                          101                                                150
ENSBTAP00000024140/1-247  SVRVEQVVKP KKNKTESEKT SDKPKRKKKG GKNGKNRRNR KKKNLCDTEF 
ENSTTRP00000011106/1-253  LVKVEQVVKP KKDKNESEKT SDKPKRKKKG GKNGKNRRNR KKKNPCDAEF 
bmy_22296T0/1-253         LVRVEQVVKP KKDKTESEKT SVKPKRKKKG GKNGKNRRNR KKKNPCDAEF 
BACU008213/1-253          LVRVEQVVKP KKDKTESSKT SDKPKRKKKG GKNGKNRRNR KKKNPCDAEF 


                          151                                                200
ENSBTAP00000024140/1-247  QNFCIHGKCT FLEQLETVSC QCYPEYFGER CGEKSMKTQS MVDSDLSKIA 
ENSTTRP00000011106/1-253  QNFCIHGECK FIEHLETVSC QCHQDYFGER CGEKSMKIHS MADSDLSKIA 
bmy_22296T0/1-253         QNFCIHGECK FIEHLETVSC QCHQDYFGER CGEKSMKIHS MADSNLSKIA 
BACU008213/1-253          QNFCIHGECK FIEHLETVSC QCHQDYFGER CGEKSMKIHS MADSNLSKIA 


                          201                                                250
ENSBTAP00000024140/1-247  LAAIAAFVSA MTFTAIAVFI TILLRRRYLR GYEGVAEERK KLRQENGNAH 
ENSTTRP00000011106/1-253  LAAIAAFVSA MSFTAIAVII TLLLRKRYFR EYEGAAEERK KLQQENGNAH 
bmy_22296T0/1-253         LAAIAAFVSA MSFTAIAVVI TLLLRKRYFR EYEGAAEERK KLQQENGNAH 
BACU008213/1-253          LAAIAAFVSA MSFTAIAVII TLLLRKQYFR EYEGAAEERK KLQQENGTAR 


                          251                                                300
ENSBTAP00000024140/1-247  AVA 
ENSTTRP00000011106/1-253  AIA 
bmy_22296T0/1-253         AIA 
BACU008213/1-253          AIA