KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:22:24 2014 Check: 00 .. Name: ENSP00000352447/1-601 Len: 616 Check: 1929 Weight: 1.00 Name: ENSBTAP00000024149/1-597 Len: 616 Check: 6982 Weight: 1.00 Name: bmy_02358T0/1-597 Len: 616 Check: 3774 Weight: 1.00 Name: ENSTTRP00000011491/1-408 Len: 616 Check: 2402 Weight: 1.00 // 1 50 ENSP00000352447/1-601 MPERELWPAG TGSEPVTRVG SCDSMMSSTS TRSGSSDSSY DFLSTEEKEC ENSBTAP00000024149/1-597 MPERELWPAG PGLEPATRVG SCDSMMSTTS TRSGSSDSSY DFLSAEEKEC bmy_02358T0/1-597 MPERELWPAG PGLEPVTHIG SCDSMMSTTS TLSGSSDSNY DFLSAEEKEC ENSTTRP00000011491/1-408 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000352447/1-601 LLFLEETIGS LDTEADSGLS TDESEPATTP RGFRALPITQ PTPRGGPEET ENSBTAP00000024149/1-597 LLFLEETIGS LDTEADSGLS TEKSEQATTP QVPRALPKTQ PAPQGHPEEI bmy_02358T0/1-597 LLFLEETIGS LDTEADSGLS TDKSGQAT-- ---------- -APRGHPKET ENSTTRP00000011491/1-408 ---------- ---------- ---------- ---------- -----HPKET 101 150 ENSP00000352447/1-601 ITQQGRTPRT VTESSSSHPP EPQGLGLRSG SYSLPRNIHI ARSQNFRKST ENSBTAP00000024149/1-597 T-GRVPEPKR VTPFSSAHPP GPQSLGLRSG SYSLPRNIHI GRNQNLRKST bmy_02358T0/1-597 V-QQGTEPKR VTPFSLSHLP EPQSLGLRSG SYSLPRNIHI GRDQILREST ENSTTRP00000011491/1-408 V-QQGTEPKR VTPFSLSHLP EPQSLGLRSG SCSLPRNIHI GRDQILRKST 151 200 ENSP00000352447/1-601 TQASSHNPGE PGRLAPEPEK EQVSQSSQPR QAPASPQEAA LDLDVVLIPP ENSBTAP00000024149/1-597 TLTNSHNPGG SEGLVSGPET EQVSQSREPR QTLATPPDAA LELDGALIPP bmy_02358T0/1-597 TQTNSHIPGA SEGLVPGPEK EQVSQSSEPH QAPTGPRDAA LDLDRAFIPP ENSTTRP00000011491/1-408 TQTNSHTPAV SDGLVPGPEK EQVGQSSELP QAPTGPRDAA LDLDRAFIPP 201 250 ENSP00000352447/1-601 PEAFRDTQPE QCREASLPEG PGQQGHTPQL HTPSSSQERE QTPSEAMSQK ENSBTAP00000024149/1-597 PEAFRDTQPQ QRGQGSLPRG PGELSPRPQV HPSLSSQRNR EPAPEAMSQK bmy_02358T0/1-597 PEAFRDTQPE QRGQHGLPSQ PGELSHRPQL HTSLCLQQKK DTTSEAMSQK ENSTTRP00000011491/1-408 PEAFRDTQPE QRGQRGLPRQ PGELSPRPQV HTSLSLQQKR ETTSEAMSQK 251 300 ENSP00000352447/1-601 AKETVSTRYT -QPQPPPAGL PQNARAEDAP LSSGEDPNSR LAPLTTPKPR ENSBTAP00000024149/1-597 ASEKGSTGEP VPPRPPPLVS SRDAGSGDAA VLSGGHPSAR PAPLTAPKPR bmy_02358T0/1-597 ASEEGSTGEP GQARPPPAVS SQNAKAEDVP GPSRGDPNAR PAPLTAPKTR ENSTTRP00000011491/1-408 ANEEGSTGEP GQPRPPPAVS SQNAKAEDVP VPSEGAPHAR LAPLTAPKPR 301 350 ENSP00000352447/1-601 KLPPNIVLKS SRSSFHSDPQ HWLSRHTEAA PGDSGLISCS LQEQRKARKE ENSBTAP00000024149/1-597 KLPPNIVLKS SRSSFHSDPQ NRLSRHSEAA PGDPSPASSS LQEQRKARRE bmy_02358T0/1-597 KLPPNIVLKS SRGGFHSDPQ NRLSCHSEAG PGDSGPASSS LQEQRRARRE ENSTTRP00000011491/1-408 KLPPNIVLKS SRGGFHSDPQ NRLSCHSEAG PGDSGPTSSS LQEQRRARRE 351 400 ENSP00000352447/1-601 ALEKLGLPQD QDEPGLHLSK PTSSIRPKET RAQHLSPAPG LAQPAAPAQA ENSBTAP00000024149/1-597 ALEKLGLPQD QEEPSPRLSR P--SVRLKET GVQAVSPAP- ---AQVP--- bmy_02358T0/1-597 ALEKLGLPQD QDEASAHLSR P--SIRLRET RTQAPSPAPA PAQPVVPAQV ENSTTRP00000011491/1-408 ALEKLGLPQD QDEASTHLSR P--STRLRET RTQAPSPAP- ---PVVPAQV 401 450 ENSP00000352447/1-601 SAAIPAAGKA LAQAP----- ---APAPGPA QGPLPMKS-- ----PAPGNV ENSBTAP00000024149/1-597 -------GRA PAAAPTQGPS P--GKAPALA QPPSPGKVLV PAQESTPGTA bmy_02358T0/1-597 SA---ATGKA PAPAPMRGPS PVKAPGPAPA QPSSPGKVLV PAQEPTPGKV ENSTTRP00000011491/1-408 SA---ATGKA PAPAP----- ---APGPAPA QPSSPGKF-- ----PTPGKV 451 500 ENSP00000352447/1-601 AASKSMPISI PKAPRANSAL TPPKPESGLT LQESNTPGLR QMNFKSNTLE ENSBTAP00000024149/1-597 PAAKSTPIPI PKGPRAHSPL TQRKPDSGLT LQESGVPGLR QMSFKSNTLE bmy_02358T0/1-597 PAAKSMPIPI PKAPQANSPL TQPKPDSGLT LQESNIPGLR QMNFKSNTLE ENSTTRP00000011491/1-408 PADKSMPIPI PRAPRANSPL TQPKPDSGLN LQESSVPGLR QMNF-SNTLE 501 550 ENSP00000352447/1-601 RSGVGLSSYL STEKDASPKT STSLGKGSFL DKISPSVLRN SRPRPASLGT ENSBTAP00000024149/1-597 RSGIGLSSYL SAEKASSPQT STSLEKGSFL DRISPSVLRN SRPRPASLGT bmy_02358T0/1-597 RSGVGLSSYL SAEKDRSPKT STSLGKSSFL DKISPNVLRN SRPRPASLGT ENSTTRP00000011491/1-408 RSCMGLSSYL SAEKDCSPKT STPLGKAF-- ---------- ---------- 551 600 ENSP00000352447/1-601 GKDFAGIQVG KLADLEQEQS SKRLSYQGQS RDKLPRPPCV SVKISPKGVP ENSBTAP00000024149/1-597 GKDFEGIQVG KLADLEQEGG PKRLSFQGQS RDKLPRPPCV SVRISPKGVS bmy_02358T0/1-597 RKDFEGIQVG KLADLEQEQG SKHLSYQGQS RDKLPRPPCV SVKISPKGVS ENSTTRP00000011491/1-408 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000352447/1-601 NEHRREALKK LGLLKE ENSBTAP00000024149/1-597 DEHRREALKK LGLLKE bmy_02358T0/1-597 AEHRREALKK LGLLKK ENSTTRP00000011491/1-408 ---------- ------