KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:37 2014 Check: 00 .. Name: ENSP00000259698/1-1068 Len: 1087 Check: 2675 Weight: 1.00 Name: ENSBTAP00000024178/1-1016 Len: 1087 Check: 3229 Weight: 1.00 Name: ENSTTRP00000015288/1-1064 Len: 1087 Check: 5295 Weight: 1.00 Name: bmy_10262T0/1-907 Len: 1087 Check: 5336 Weight: 1.00 Name: BACU017600/1-1008 Len: 1087 Check: 9769 Weight: 1.00 // 1 50 ENSP00000259698/1-1068 ---------M LVGSQSFSPG GPNGIIRSQS FAGFSGLQER RSR---CNSF ENSBTAP00000024178/1-1016 ---------M LVGSQSFSPG GPNGIIRSQS FAGFSGLQER RSR---CNSF ENSTTRP00000015288/1-1064 ---------M LVGSQSFSPG GPNGIIRSQS FAGFSGLQER RSR---QNSF bmy_10262T0/1-907 ---------M LVGSQSFSPG GPNGIIRSQS FAGFSGLQER RSR---CNSF BACU017600/1-1008 GLPARLPEIM LVGSQSFSPG GPNGIIRSQS FAGFSGLQER RSRQVVCNSF 51 100 ENSP00000259698/1-1068 IENSSALKKP QAKLKKMHNL GHKNNNPPKE PQPKRVEEVY RALKNGLDEY ENSBTAP00000024178/1-1016 IENSSAVKKP QAKLKKMHNL GHKNSSPPKE PQPKRVEEVY RALKNGLDEY ENSTTRP00000015288/1-1064 IENPSALKKP QAKLKKMHNL GYKNSSPPKE PQPKRVEEVY RALKNGLDEY bmy_10262T0/1-907 IENPSVLKKP QAKLKKMHNL GHKNSSPPKE PQPKRVEEVY RALKNGLDEY BACU017600/1-1008 IENPSALKKP QAKLKKMHNL GHKNSSPPKE PQPKRVEEVY RALKNGLDEY 101 150 ENSP00000259698/1-1068 LEVHQTELDK LTAQLKDMKR NSRLGVLYDL DKQIKTIERY MRRLEFHISK ENSBTAP00000024178/1-1016 LEVHQTELDK LTTQLKDMRR NSRLGVLYDL DKQIKTIERY MRRLEFHISK ENSTTRP00000015288/1-1064 LEVHQTELDK LTAQLKDMRR NSRLGVLYDL DKQIKTIERY VRRLEFHISK bmy_10262T0/1-907 LEVHQTELDK LTAQLKDMRR NSRLGVLYDL DKQIKTIERY MRRLEFHISK BACU017600/1-1008 LEVHQTELDK LTAQLKDMRR NSRLGVLYDL DKQIKTIERY MRRLEFHISK 151 200 ENSP00000259698/1-1068 VDELYEAYCI QRRLQDGASK MKQAFATSPA SKAARESLTE INRSFKEYTE ENSBTAP00000024178/1-1016 VDELYEAYCI QRRLQDGASK MKQAFATSPA SKAARESLAE INRSYKEYTE ENSTTRP00000015288/1-1064 VDELYEAYCI QRRLQDGASK MKQAFAASPA SRAARESLSE IHRSYKEYTE bmy_10262T0/1-907 VDELYEAYCI QRRLQDGASK MKQAFATSPA SKAARESLSE INRGYKEYTE BACU017600/1-1008 VDELYEAYCI QRRLQDGASK MKQAFATSPA SKAARESLSE VSRSYREYTE 201 250 ENSP00000259698/1-1068 NMCTIEVELE NLLGEFSIKM KGLAGFARLC PGDQYEIFMK YGRQRWKLKG ENSBTAP00000024178/1-1016 NMCAIEAELE KQLGEFSIKM KGLAGFARLC PGDQYEIFMK YGRQRWKLKG ENSTTRP00000015288/1-1064 NMCTIEAELE KQLGEFSIKM KGLAGFARLC PGDQYEIFMK YGRQRWKLKG bmy_10262T0/1-907 NMCTIEAELE KQLGEFSIKM KGLAGFARLC PGDQYEIFMK YGRQRWKLKG BACU017600/1-1008 NMCTIEAELE KQLGEFSVKM KGLAGFARLC PGDQYEIFMK YGRQRWKLKG 251 300 ENSP00000259698/1-1068 KIEVNGKQSW DGEETVFLPL IVGFISIKVT ELKGLATHIL VGSVTCETKE ENSBTAP00000024178/1-1016 RIEVNGKQSW DGEEMVFLPL IVGFISIKVT ELKGLATHLL VGSVTCETKE ENSTTRP00000015288/1-1064 RIEVNGKQTW DGEEMVFLPL IIGLISIKVT ELKGLATHLL VGSVTCETKE bmy_10262T0/1-907 RIEVNGKQTW DGEEMVFLPL IVGLISIKVT ELKGLATHLL VGSVTCETKE BACU017600/1-1008 RIEVNGKQTW DGEEMVFLPL IVGLISIKVT ELKGLATHLL VGSVTCETKE 301 350 ENSP00000259698/1-1068 LFAARPQVVA VDINDLGTIK LNLEITWYPF DVEDMTASSG AGNKAAALQR ENSBTAP00000024178/1-1016 LFAARPQVVA VDINDLGTIK LNLEITWYPF DVEDMTPSSG AGNKVAALQR ENSTTRP00000015288/1-1064 LFAARPQVVA VDINDLGTIK LNLEITWYPF DVEDMTPSSG AGNKAAALQR bmy_10262T0/1-907 LFAARPQVVA VDINDLGTIK LNLEITWYPF DVEDMTPSSG AGNKAAALQR BACU017600/1-1008 LFAARPQVVA VDINDLGTIK LNLEITWYPF DVEDMTPSSG AGNKAAALQR 351 400 ENSP00000259698/1-1068 RMSMYSQGTP ETPTFKDHSF FRWLHPSPDK PRRLSVLSAL QDTFFAKLHR ENSBTAP00000024178/1-1016 RMSMYSQGTP ETPTFKDHSF F--------- ---------- ---------- ENSTTRP00000015288/1-1064 RMSMYSQGTP ETPTFKDHSF FRWLHPSPDK P-RLSVLSAL QESFFAKLHR bmy_10262T0/1-907 RMSMYSQGTP ETPTFKDHSF F--------- ---------- ---------- BACU017600/1-1008 RMSMYSQGTP ETPTFKDHSF FRWLHPSPDK P-RLSVL--- ---------- 401 450 ENSP00000259698/1-1068 SRSFSDLPSL RPSPKAVLEL YSNLPDDIFE NGKAAEEKMP LSLSFSDLPN ENSBTAP00000024178/1-1016 ---------- ---------- -SNLPDDIFE NGKAAEEKMP LSLSFSDLPN ENSTTRP00000015288/1-1064 SRSFSDLPSL RLRPKAVLEF YSNLPDDVLE NGKAAGEKMP LSLSFSDLPN bmy_10262T0/1-907 ---------- ---------- -SNLPDDIFE NGKAAAEKMP LSLSFSDLPN BACU017600/1-1008 ---------- ---------- -SALQDSFF- ------AKLH RSRSFSDLPS 451 500 ENSP00000259698/1-1068 GDCALTSHST GS--PSNSTN PEITITPAEF NLSSLASQNE GMDDTSSASS ENSBTAP00000024178/1-1016 GDCTLAPGPA DSLPGACAAN PEITITSTEL PPGSQSSQNE GLKDSSSASC ENSTTRP00000015288/1-1064 GDCTLSHNPG RPLPSTCSAN PEITITPAEL NRDSPSSQNE GLDDSSSSSS bmy_10262T0/1-907 GDCAPSRSPA GSLPSACSAN PEITITPAEL NRGSPSSQNE GLDDSSSASS BACU017600/1-1008 ---------- ---------- --LRLRP--- -KAVLEFYNE GLDDSGSASS 501 550 ENSP00000259698/1-1068 RNSLGE-GQE PKSHLKEEDP EEPRKPASAP SEACRRQSSG AGAEHLFLEN ENSBTAP00000024178/1-1016 SSSSRE-GSE PRPH-PEGET QGLGKP---- -EGC-PVATG ARPERLFLQK ENSTTRP00000015288/1-1064 KSSLGEEGSE PRPH-REEET EGLGKP---- -EAC-RASAG ARTERLFLEK bmy_10262T0/1-907 KSSLGE-GSE PRPH-REEET EGPGKP---- -EAC-RASAG APTERLFLEK BACU017600/1-1008 KSSLGE-GSE PRPH-REEET EGPGKP---- -EAG-RASAG ARTERLFLEK 551 600 ENSP00000259698/1-1068 DVAEALLQES --EEASELKP VELDTSEGNI TKQLVKRLTS AEVPMATDRL ENSBTAP00000024178/1-1016 GVAEALLQEA LLQEPSELKP VELDTFEGNI TKQLVKRLTS AEVPAATERL ENSTTRP00000015288/1-1064 GVAEALLQES --DEASELKP VELDTFEGNI TKQLVKRLTS SEVPAATERL bmy_10262T0/1-907 GVAEALLQES --DEASELKP VELDTFEGNI TKQLVKRLTS SEVPAATERL BACU017600/1-1008 GVAEALLQES --DEASELKP VELDTFEGNI TKQLVKRLTS SEVPAATERL 601 650 ENSP00000259698/1-1068 LSEGSVGGES EGCRSFLDGS LEDAFNGLLL ALEPHKEQYK EFQDLNQEVM ENSBTAP00000024178/1-1016 LSEGSISAES EGCRSFLDGS LEDAFNGLFL ALEPHKEQYK EFQDLNQEVM ENSTTRP00000015288/1-1064 LFEGSVSGES EGCRSFLDGS LEDAFNGLFL ALEPHKEQYK EFQDLNQEVM bmy_10262T0/1-907 LSEGSVSGES EGCRSFLDGS LEDAFNGLFL ALEPHKEQYK EFQDLNQEVM BACU017600/1-1008 LSEGSVSGES EGCRSFLDGS LEDAFNGLFL ALEPHKEQYK EFQDLNQEVM 651 700 ENSP00000259698/1-1068 NLDDILKCKP AVSRSRSSSL SLTVESALES FDFLNTSDFD EEE-DGDEVC ENSBTAP00000024178/1-1016 HLDDILKCKP AVSRSRSSSL SLTVESALES FDFLNTSDFD EEE-DGDEVC ENSTTRP00000015288/1-1064 HLDDILKCKP AVSRSRSSSL SLTVESALES FDFLNTSDFD EEEEDGDEVC bmy_10262T0/1-907 HLDDILKCKP AVSRSRSSSL SLTVESALES FDFLNTSDFD EEEDDGGEVC BACU017600/1-1008 HLDDILKCKP AVSRSRSSSL SLTVESALES FDFLNTSDFD EEEDDGGEVC 701 750 ENSP00000259698/1-1068 NVGGGADSVF SDTETEKHSY RSVHPEARGH LSEALTEDTG VGTSVAGSPL ENSBTAP00000024178/1-1016 NVGGGADSVF SDTETEKNSY RSVHPEARGH LSEALTEDTG VGTSVAGSPL ENSTTRP00000015288/1-1064 NVGGGADSVF SDTETEKNSY RSVHPEVRGH LSEALTEDTG VGTSVAGSPL bmy_10262T0/1-907 NVGGGADSVF SDTETEKHSY RSVHPEARGH LSEALTEDTG VGTSVAGSPL BACU017600/1-1008 NVGGGADSVF SDTETEKHSY RSVHPEARGH LSEALTEDTG VGTSVAGSPL 751 800 ENSP00000259698/1-1068 PLTTGNESLD ITIVRHLQYC TQLVQQIVFS SKTPFVARSL LEKLSRQIQV ENSBTAP00000024178/1-1016 PLTTGNESLD LTIIRHLQYC TQLVQQIVLS SKTPFVASNL LEKLSRQIQV ENSTTRP00000015288/1-1064 SLTTGNESLD LSIIRHLQYC TQLVQQIVFS SKTPFVARNL LEKLSRQIQV bmy_10262T0/1-907 PLTTGNESLD LSIIRHLQYC TQLVQQIVFS SKTPFVARNL LEKLSRQIQV BACU017600/1-1008 PLTTGNESLD LSIIRHLQYC TQLVQQIVFS SKTPFVARNL LEKLSRQIQV 801 850 ENSP00000259698/1-1068 MEKLAAVSDE NIGNISSVVE AIPEFHKKLS LLSFWTKCCS PVGVYHSPAD ENSBTAP00000024178/1-1016 MEKLSAVSDE NIGNISSVIE AIPEFHKKLS LLSFWTKCCT PIGVYHSSAD ENSTTRP00000015288/1-1064 MEKLSAVSDE NIGSISSVIE AIPEFHKKLS LLSFWTKCCS PAGVYHSSAD bmy_10262T0/1-907 MEKLSAVSDE NIGNISSVIE ---------- ---------- ---------- BACU017600/1-1008 MEKLSAVSDE NMGNISSVIE AIPEFHKKLS LLSFWTKCCS PAGVYHSSAD 851 900 ENSP00000259698/1-1068 RVMKQLEASF ARTVNKEYPG LADPVFRTLV SQILDRAEPL LSSSLSSEVV ENSBTAP00000024178/1-1016 RVIKQLEASF ARTVNRDYPG LADPVFHTLV SQILDRAEPL LPASLSSEVI ENSTTRP00000015288/1-1064 RVIKQLEASF ARTVNRDYPG LADPVFRTLV SQILDRAEPL LTSSLSSEVI bmy_10262T0/1-907 ---------- ---------- ---------- ---------- ---------- BACU017600/1-1008 RVIKQLEASF ARTVNRDYPG LADPVFRTLV SQILDRAEPL LTSSLSSEVI 901 950 ENSP00000259698/1-1068 TVFQYYSYFT SHGVSDLESY LSQLARQVSM VQTLQSLRDE KLLQTMSDLA ENSBTAP00000024178/1-1016 TVFQYYSYFT SHGVSDLESY LNQLAKQVLV VQTLQSLRDE KLLQAVSDLA ENSTTRP00000015288/1-1064 TVFQYYSYFT SHGVSDLESY LNQLAKQVSM VQTLQSLRDE KLLQVMSDLA bmy_10262T0/1-907 ---------- ---------- -------VSM VQTLQSLRDE KLLQAMSDLA BACU017600/1-1008 TVFQYYSYFT SHGVSDLESY LNQLAKQVSM VQTLQSLRDE KLLQAMSDLA 951 1000 ENSP00000259698/1-1068 PSNLLA-QQE VLRTLALLLT REDNEVSEAV TLYLAAASKN QHFREKALLY ENSBTAP00000024178/1-1016 PGSFPAPQEE VLRTLALLLT GEDSGASEAV TLYLTAASRS EHFREKALLY ENSTTRP00000015288/1-1064 PSSLLA-QQE ILRTLALLLT GDDSGVSEAV MLYLAAASRN EHFREKALLY bmy_10262T0/1-907 PSSLPA-QQE ILXTLALLLT GDDSGVSEAV MLYLAAASRN EHFREKALLY BACU017600/1-1008 PSSLPA-QQE ILGTLALLLT GDDSGVSEAV MLYLAAASRN EHFREKALLY 1001 1050 ENSP00000259698/1-1068 YCEALTKTNL QLQKAACLAL KILEATESIK MLVTLCQSDT EEIRNVASET ENSBTAP00000024178/1-1016 YCEALTKTDF RLQKAACLAL KSLKATESIK MLVTLCQSDT EEIRNVASET ENSTTRP00000015288/1-1064 YCEALTKTDL WLQKGACLAL KSLKATESTK MLVTLCQSDT EEIRNVASET bmy_10262T0/1-907 YCEALTKTDL WLQKGACLAL KSLKATESIK MLVTLCQSDT EEIRNVASET BACU017600/1-1008 YCEALTKTDL WLQKGACLAL KSLKATESIK MLVTLCQSDT EEIRNVASET 1051 1100 ENSP00000259698/1-1068 LLSLGEDGRL AYEQLDKFPR DCVKVGGRHG TEVATAF ENSBTAP00000024178/1-1016 LLSLGEDGRL AYEQLDKFPR DCVKVGGRLA SEVATAF ENSTTRP00000015288/1-1064 LLSLGEDGRL AYEQLDKFPR DCVKVGGRHA SEVATAF bmy_10262T0/1-907 LLSLGEDGRL AYEQLDKFPR DCVKVGGXHA SEVATAF BACU017600/1-1008 LLSLGEDGRL AYEQLDKFPR DCVKVGGRHA SEVATAF