KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:38 2014 Check: 00 .. Name: ENSP00000337854/1-585 Len: 589 Check: 1841 Weight: 1.00 Name: ENSTTRP00000012472/1-545 Len: 589 Check: 7053 Weight: 1.00 Name: ENSBTAP00000024186/1-479 Len: 589 Check: 759 Weight: 1.00 Name: bmy_02220T0/1-355 Len: 589 Check: 985 Weight: 1.00 Name: BACU011650/1-482 Len: 589 Check: 6812 Weight: 1.00 // 1 50 ENSP00000337854/1-585 -MSGSTPFQM RLVHLDLKGA PPKVSYLSEI FPLFRALGAN GLLIEYEDMF ENSTTRP00000012472/1-545 -MSGCSPFKM RLVHLDLKGA PPRVCYLSEX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000024186/1-479 -MSGSSPFKM RLVHLDLKGA PPKVCYLSEI FPLFRALGAN GILIEYEDMF bmy_02220T0/1-355 MMSGSSPFKM RLVHLDLKGA PPRVCYLSEI FPLFRALGAN GLLIEYEDMF BACU011650/1-482 -MSGSSPFKM RLVHLDLKGA PPRVCYLSEI FPLFRALGAN GLLIEYEDMF 51 100 ENSP00000337854/1-585 PYEGPLRLLR AKYAYSPSEI KEILHLAGLN ELEVIPLVQT FGHMEFVLKH ENSTTRP00000012472/1-545 XXXXXXXXXX XXXXXXPSEI KEILHLATLN ELEVIPLVQT FGHMEFVLKH ENSBTAP00000024186/1-479 PYEGHLRLLR AKHAYSPSEI KEILHLATLN ELEVIPLVQT FGHMEFVLKH bmy_02220T0/1-355 PYEGHLRLLR AKHAYSPSEI KEILHLATLN ELEVIPLVQT FGHMEFVLKH BACU011650/1-482 PYEGHLRLLR AKHAYSPSEI KEILHLATLN ELEVIPLVQT FGHMEFVLKH 101 150 ENSP00000337854/1-585 TAFAHLREVG SFPCTLNPHE AESLALVGAM IDQVLELHPG AQRLHIGCDE ENSTTRP00000012472/1-545 EALAHLREVA LFPNTLNPHK AESLALVGAM IDQVMALHPG ARWLHIGCDE ENSBTAP00000024186/1-479 EALAHLREVA RFPNTLNPHK EESLALVTAM IDQVMELHPG ARWFHVGCDE bmy_02220T0/1-355 EALAHLREVA LFPNTLNPHK AESLALVGAM IDQVMALHPG ARWLHIGCDE BACU011650/1-482 EALAHLREVA LFPNTLNPHK AESLALVGAM IDQVMALHPG ARWLHIGCDE 151 200 ENSP00000337854/1-585 VYYLGEGEAS RRWLQQEQNS TGKLCLSHMR AVASGVKARR PSVTPLVWDD ENSTTRP00000012472/1-545 VYYLGEGEDS RQWLQQEPNT RAELCLSYME AVASHVQARH PTTTPLVWDD ENSBTAP00000024186/1-479 VYYLGEGETS RQWLQQEPNS KAKLCLSHME AVASHMRARY PTTTPLMWDD bmy_02220T0/1-355 VYYLGEGEDS RQWLQQEPNT RAELCLSYME AVASHVQAQH PTTTPLVWDD BACU011650/1-482 VYYLGEGEDS RQWLQQEPNT RAELCLSYME AVASHVQAQH PTTMPLVWDD 201 250 ENSP00000337854/1-585 MLRDLPEDQL AASGVPQLVE PVLWDYTADL DVHGKVLLMQ KYR---RCGF ENSTTRP00000012472/1-545 MLRDIPEDQL SASRVPQLVE PVLWDYGADL DVHSKALLME KYR---KSGF ENSBTAP00000024186/1-479 MLRDIPEDQL SGSRVPQLVE PVLWDYGADL DLHGKALLVE KYR---KSGF bmy_02220T0/1-355 MLRDIPEDQL SASRVPQLVE PVLWDYGADL DVHSKALLME KYR---KSGF BACU011650/1-482 MLRDIPEDQL SASRVPQLVE PVLWDYGADL DVHSKALLME KYRKXXKSGF 251 300 ENSP00000337854/1-585 PQLWAASAFK GATGPSQAVP PVEHHLRNHV QWLQVAGSGP TDSLQGIILT ENSTTRP00000012472/1-545 SWLWAASAFK GATGASQALT PIEHHLRNHM QWLQVAGSVP ADTLQGIVLT ENSBTAP00000024186/1-479 SWLWAASAFK GATGVNQSLT PIEHHLRNHL QWLQVAGSVP ADTLRGIILT bmy_02220T0/1-355 SWLWAASAFK GATGASQALT PIEHHLRNHV QWLQVAGSVP ADTLQGIVLT BACU011650/1-482 SWLWAASAFK GATGASQALT PIEHHLRNHV QWLQVAGSVP ADTLQGIVLT 301 350 ENSP00000337854/1-585 GWQRYDHYSV LCELLPAGVP SLAACLQLLL RGGFDEDVKA KVENLLGISS ENSTTRP00000012472/1-545 GWQRYDHFSV LCELLPVGIP SLAVCLQVLL HGGFAENVKA RVENFLGTSS ENSBTAP00000024186/1-479 GWQRYDHFSV LCELLPVGIP SLAVCLQALL HGDFAENVKA RVENFLGISS bmy_02220T0/1-355 GWQRYDHFSV LCELLPVGIP SLAVCLQVLL HGGFAENVKA RVENFLGTSS BACU011650/1-482 GWQRYDHFSV LCELLPVGIP SLAVCLQVLL HGGFAENVKA RVENFLGTSS 351 400 ENSP00000337854/1-585 LEKTDPVRQA PCSPPCPLLP LPFPRPWRQL FSAGLSAGRG PAPSLAATSL ENSTTRP00000012472/1-545 LEATDFRRPT P--------- SPARPLIWMS SAQWLPAVRG PAPSLAATST ENSBTAP00000024186/1-479 LEEMSFRSEG A--------- ---------- ---------G SFPGSDILAL bmy_02220T0/1-355 LEATDFRR-- ---------- ---------- ---------- ---------- BACU011650/1-482 LEATDFRSER A--------- ---------- ---------G SFPGSDILNL 401 450 ENSP00000337854/1-585 PLSHKSASIC AALWMRCWRA TGMSLAGSAP TTASGSSSTR SWFSTSSPQR ENSTTRP00000012472/1-545 -SSHKSASIC AAPWMRCWRG TGMPAGSAPT IAGGSSSTPS S--STSSPRR ENSBTAP00000024186/1-479 -VTQVSLHLC ---------- ---------- ------SSVD A--LLERDRY bmy_02220T0/1-355 ---------- ---------- ---------- ---------- ---------- BACU011650/1-482 -ITQVSLHLC ---------- ---------- ------SSVD A--LLERDRY 451 500 ENSP00000337854/1-585 SASWHSGAPS CRSWRLPCSW LSTRMPWRSG WRKTCTPACS GCKLCCRTSA ENSTTRP00000012472/1-545 TVSWPGGAFS WGSWRLPCSV SSTQTQWRSG WRKTCAPACG GCRLCCRIWV ENSBTAP00000024186/1-479 VTGWFSPYHR RRKLIHPVMI EHIQPQALSL LARWNA---- --------LA bmy_02220T0/1-355 ---------- ---------- ---------- ---------- ---------- BACU011650/1-482 VTGWFSPYHR RRKFIHPVMI QHIQPQALSL LARWSV---- --------LV 501 550 ENSP00000337854/1-585 RCLPPRCHPP ALAGTLLRTP EGRAHARGLL LEAGGALHCQ MAWAIRAHVG ENSTTRP00000012472/1-545 RQPAP----- --GPTRVRTP EGRAK----- ---------- ----LRLSAS ENSBTAP00000024186/1-479 GELEA----- --ALQRIFYP DTVEE----- ---------- --W-LEENV- bmy_02220T0/1-355 ---------- ---------- ---------- ---------- ---------- BACU011650/1-482 GELEA----- --ALQRVFYP DAVEE----- ---------- --W-LEENV- 551 600 ENSP00000337854/1-585 VVPSGPAVSC PHSVPEGPGQ PLGERLENTE GSSTGRPAL ENSTTRP00000012472/1-545 LHP-HPAARP HVRLLSPACQ QRPQKQENME GKDTLPIQ- ENSBTAP00000024186/1-479 ----HPSLQR LQALLQDLGE AASPRQDSGQ DP------- bmy_02220T0/1-355 ---------- ---------- ---------- --------- BACU011650/1-482 ----HPSLRR LQALLQALGE AARARPDSGQ DA-------