KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:40 2014 Check: 00 .. Name: ENSP00000384302/1-677 Len: 723 Check: 9442 Weight: 1.00 Name: ENSBTAP00000024220/1-681 Len: 723 Check: 1783 Weight: 1.00 Name: ENSTTRP00000007831/1-718 Len: 723 Check: 338 Weight: 1.00 Name: BACU014570/1-528 Len: 723 Check: 1176 Weight: 1.00 Name: bmy_01113T0/1-500 Len: 723 Check: 5916 Weight: 1.00 // 1 50 ENSP00000384302/1-677 ---------- ---MAAGGGG SCDPLAPAGV PCAFSPHSQA Y--------- ENSBTAP00000024220/1-681 ---------- ---MAAGGGG VADPLSPAGV PCAFSPQSQA Y--------- ENSTTRP00000007831/1-718 GDGQLFRREL RYGACVRGGA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU014570/1-528 ---------- ----MAGGGG VADPFSPTGV PCAFSPQSQA Y--------- bmy_01113T0/1-500 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000384302/1-677 ---------- ---------- FALASTDGHL RVWETANNRL HQEYVPSAHL ENSBTAP00000024220/1-681 ---------- ---------- FALASADGHL RVWETANNRL HQEYVPSAHL ENSTTRP00000007831/1-718 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU014570/1-528 ---------- ---------- FALASTNGHL RVWETANNRL HQEVV----- bmy_01113T0/1-500 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000384302/1-677 SGTCTCLAWA PARLQAKESP QRKKRKSEAV GMSNQTDLLA LGTAVGSILL ENSBTAP00000024220/1-681 SGTCTCLAWA PARLQAKEGP QRKKRKSEAI VTSNQADLLA LGTAVGSILL ENSTTRP00000007831/1-718 XXXXXXXXXX XXXXXXXEGP QRKKRKSEAI GTSNQVDLLA LGTAVGSILL BACU014570/1-528 ---------- ---------- ---------- ---------- ---------- bmy_01113T0/1-500 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000384302/1-677 YSTVKGELHS KLISGGHDNR VNCIQWHQDS GCLYSCSDDK HIVEWNVQTC ENSBTAP00000024220/1-681 YSTVKGELHS KLINGGHDNR VNCIQWHQDN GCLYSCSDDK HIVEWNTQTC ENSTTRP00000007831/1-718 YSTVKGELHS KLISGGHDNK VNCIQWHQDN GCLYSCSDDK HIVEWNTQTC BACU014570/1-528 ---------- -----GHDNK VNCIQWHQDN GCLYSCSDDK HIVEWNTQTC bmy_01113T0/1-500 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000384302/1-677 KVKCKWKGDN SSVSSLCISP DGKMLLSAGR TIKLWVLETK EVYRHFTGHA ENSBTAP00000024220/1-681 KVKCKWKGDN SSVSSLCISP DGKMLLSAGR TIKLWVLETK EVYRHFTGHA ENSTTRP00000007831/1-718 KVKCKWKGDN SSVSSLCISP DGKMLLSAGR TIKLWVLETK EVYRHFTGHA BACU014570/1-528 KVKCKWKGDN SSVSSLCISP DGKMLLSAGR TIKLWVLETK ELYRHFTGHA bmy_01113T0/1-500 ---------- ---------- ---MLLSAGR TIKLWVLETK EVYRHFTGHA 251 300 ENSP00000384302/1-677 TPVSSLMFTT IRPPNESQPF DGITGLYFLS GAVHDRLLNV WQVRSENKEK ENSBTAP00000024220/1-681 TPVSSLTFTT IRPPNEIQPF DGITGLYFLS GAVHDRLLNV WQVRSENKEK ENSTTRP00000007831/1-718 TPVSSLMFTT IRPPNESQPF DGITGLYFLS GAVHDRLLNV WQVRSENKEK BACU014570/1-528 TPVSSLMFTT IRPPNESLPF DGITGLYFLS GAVHDRLLNV WQVRSENKEK bmy_01113T0/1-500 TPVSSLMFTT IRPPNESQPF DGITGLYFLS GAVHDRLLNV WQVRSENKEK 301 350 ENSP00000384302/1-677 SAVMSFTVTD EPVYIDLTLS ENKEEPVKLA VVCRDGQVHL FEHILNGYCK ENSBTAP00000024220/1-681 NAVMSFTVTD EPVYIDLTLS ENKEEPVKLA VVCRDGQVHL FEHILNGYCK ENSTTRP00000007831/1-718 NAVMSFTVTD EPVYIDLTLS ENKEEPVKLA VVCRDGQVHL FEHILNGYCK BACU014570/1-528 NAVMSFTVTD EPVYIDLTLS ENKEE----- ---------- ---------- bmy_01113T0/1-500 NAVMSFTVTD EPVYIDLTLS ENKEEPVKLA VVCRDGQVHL FEHILNGYCK 351 400 ENSP00000384302/1-677 KPLTSNCTIQ IATPGKGKKS TPKPIPILAA GFCSDKMSLL LVYGSWFQPT ENSBTAP00000024220/1-681 KPLTSNCTIQ IATPGKGKKS TPKPIPILAA GFCSDKMSLL LVYGNWFQPT ENSTTRP00000007831/1-718 KPLTSNCTIQ IATPGKGKKS TPKPVPILAA GFCSDKMSLL LVYGSWFQPT BACU014570/1-528 ---------- ---------- ---------- ---------- ---------- bmy_01113T0/1-500 KPLTSNCTIQ IATPGKGKKS TPKPIPILAA GFCSDRMSLL LVYGSWFQPT 401 450 ENSP00000384302/1-677 IERVALNSRE PHMCLVRDIS NCWAPKVETA ITKVRTPVMN SEAKVLVPGI ENSBTAP00000024220/1-681 IERVALNPKE PHMCLIRDIS NCWAPKVETA ITKVRTPVMN SEAKVLVPGI ENSTTRP00000007831/1-718 IERVALNSKE PHMCLVRDIS ICWAPKVETA ITKVRTPVMN SEAKVLVPGI BACU014570/1-528 ----ALNSKE PHMCLVRDIS ICWAPKVETA VTKVRTPMMN SEAKVLVPGI bmy_01113T0/1-500 IERVALNSKD PHMCLVRDIS ICWAPKVETA ITKVRTPVMN SEAKVLVPGI 451 500 ENSP00000384302/1-677 PGHHAAIKPA PPQTEQVESK RKSGGNEVSI EERLGAMDID THKKGKEDLQ ENSBTAP00000024220/1-681 PGHHAAVKPP PPQTKEVESK RKLGEKEVSI EERLGALDIA SKKEKDNLPQ ENSTTRP00000007831/1-718 PGHHAAIKPA SPQTEEIESK RKLGEKEVSI EERLGALDID AKKEKDTLPQ BACU014570/1-528 PGHHAAIKPA PPQTEEIESK RKLGENEVSI EERLGALDID TKKEKDNLPQ bmy_01113T0/1-500 PGHHAAIKPA PPQTEEIESK RKLGENEVSI EERLGALDID TKKEKDNLPQ 501 550 ENSP00000384302/1-677 TNSFPVLLTQ GLESNDFEML NKVLQTRNVN LIKKTVLRMP LHTIIPLLQE ENSBTAP00000024220/1-681 TNSFPVLLTQ GLESNDFEIL NKVLQTRNLN LIKRTVLRMP LHAVIPLLQE ENSTTRP00000007831/1-718 TNSFPVLLTQ GLESNDFEML NKVLQTRNLN LIKRTVLRMP LHAVIPLLQE BACU014570/1-528 TNSFPVLLTQ GLESNDFEML NKVLQTKNLN LIKRTVLRMP LHAVIPLLQE bmy_01113T0/1-500 TNSFPVLLTQ GLESNDFEML NKVLQTKNLN LIKRTVLRMP LHAVIPLLQE 551 600 ENSP00000384302/1-677 LTKRLQGHPN SAVLMVQWLK CVLTVHASYL STLPDLVPQL GTLYQLMESR ENSBTAP00000024220/1-681 LTKRLQGHPN SAILMVQWLK CVLTVHASYL STLPDLVPQL GTLYQLMESR ENSTTRP00000007831/1-718 LTKRLQGHPN SAVIMVQWLK CVLTIHASYL STLPDLVPQL GTLYQLMESR BACU014570/1-528 LTKRLQGHPN SAVLMVQWLK CVLTIHASYL STLPDLVPQL GTLYQLMESR bmy_01113T0/1-500 LTKRLQGHPN SAVLMVQWLK CVLTIHASYL STLPDLVPQL GTLYQLMESR 601 650 ENSP00000384302/1-677 VKTFQKLSHL HGKLILLITQ VTASEKTKGA TSPGQKAKLV YEEESSEEES ENSBTAP00000024220/1-681 VKTFQKLSHL HGKLILLITQ VTASEKTKET TCPAQKAKLV YEEESSEEES ENSTTRP00000007831/1-718 VKTFQKLSHL HGKLILLITQ VTASEKTKGP TCPAQ-AKVV Y-EESSEEES BACU014570/1-528 VKTFQKLSHL HGKLILLITQ VTASEKTKGP TCPAQKAKLV YEEESSEEES bmy_01113T0/1-500 VKSFQKLSHL HGKLILLITQ VTASEKTKGP TCPAQKAKLV YEEESSEEES 651 700 ENSP00000384302/1-677 DDEIADKDSE DNWDEDEEES ESEKDEDV-- --EEEDEDAE GKDEENGEDR ENSBTAP00000024220/1-681 DDEIADKDSD DNWDEDEDEK ASEKDEDVDE ENEEEEGDDE DKDEENGEDR ENSTTRP00000007831/1-718 DDEIADKDSD DNWDEDEEEK GGEKDEDVD- --EEEEEDAE EKDEENGEDR BACU014570/1-528 DDEIADKDSD DNWDEDEEEK GSEKDEDVD- --EEEEEDAE EKGEENGEDR bmy_01113T0/1-500 DDEIADKDSD DNWDEDEEEK GSEKDEDVDE EEEEEEEDAE EKGEENGEDR 701 750 ENSP00000384302/1-677 DTASEKELNG DSDLDPENES EEE ENSBTAP00000024220/1-681 DVASEKELNG DSDLDPENES EEE ENSTTRP00000007831/1-718 DVASEKELNG DSDLDPENES EEE BACU014570/1-528 DVASEKELNG DSDLDPENES EEE bmy_01113T0/1-500 DVASEKELNG DSDLDPENES EEE