KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:22:41 2014 Check: 00 .. Name: ENSP00000398979/1-259 Len: 392 Check: 7426 Weight: 1.00 Name: ENSBTAP00000024228/1-265 Len: 392 Check: 1635 Weight: 1.00 Name: bmy_17455T0/1-357 Len: 392 Check: 4309 Weight: 1.00 Name: ENSTTRP00000010500/1-242 Len: 392 Check: 6406 Weight: 1.00 // 1 50 ENSP00000398979/1-259 MGKNFSDSFL SRECVIRMVS GRFYLSCLLL GSLGSMCILF TIYWMQYWRG ENSBTAP00000024228/1-265 ---------- -------MAV GWFYLSVLAL CSLGSMCILF TIYWMRYWHG bmy_17455T0/1-357 ---------- ---------- ---------- -----MCILF TIYWMRYWQG ENSTTRP00000010500/1-242 ---------- -------MAM GWFYLSVLAL CSLGLMCTLS TIYWISYWQG 51 100 ENSP00000398979/1-259 GFAWNGSIYM FNWHPVLMVA GMVVFYGGAS LVYRLPQSWV GPKLPWKLLH ENSBTAP00000024228/1-265 GFAWDGSMLM FNWHPVLMVT GMVVLYSAAS LVYRLPQSWV GPRLPWKSGH bmy_17455T0/1-357 GFAWDGTMLM FNWHPVLMVT GMVVVYSAAS LVYRLPQSWV GPKLPWKFGH ENSTTRP00000010500/1-242 GFAWDGTILM FNWHPVLMVT GMVVFYSAAS LVYRLPQSWV GPKLPWKFGH 101 150 ENSP00000398979/1-259 AALHLMAFVL TVVGLVAVFT FHNHGRTANL YSLHSWLGIT TVFLFACQWF ENSBTAP00000024228/1-265 AAMHLLAFLL TVLGLHAVFE FHNHAKIPHL YSLHSWLGIT TVFLFACQWF bmy_17455T0/1-357 AAMHLLAFIL TVLGLHAVFD FHNHRKIPNL YSLHSWLGIT TVFLFACQWF ENSTTRP00000010500/1-242 AAMHLLAFIL TVLGLHAVFD FHSRRKIPNL YSLHSWLGIT TVFLFACQWF 151 200 ENSP00000398979/1-259 LGFAVFLLPW ASMWLRSLLK PIHVFFGAAI LSLSIASVIS GINEKLFFSL ENSBTAP00000024228/1-265 LGFSVFLLPW ASMWLRSLLK PIHVFFGASI LSLAIASVVS GINEKLFFSL bmy_17455T0/1-357 LGFAVFLLPW ASVQLRSLLK PIHVFFGASI LSLAIASVIS GINEKLFFSL ENSTTRP00000010500/1-242 LGFAVFLLPW ASVRLRSLLK PIHVFFGASI LSLAIASVIS GINEKLFSSL 201 250 ENSP00000398979/1-259 KNTTRPYHSL PSEAVFANST GMLVVAFGLL VLYILLASSW KRPEPGILTD ENSBTAP00000024228/1-265 KNGTKTYSNL PSEAVFANCA GMLVVVFGLL VLYILLASSW KRPEPGMQAE bmy_17455T0/1-357 KNGTNSYPSL PSEAVFANCS GMLVVVFGLL VLYILLASSW KRPELGMQAE ENSTTRP00000010500/1-242 RNGTNSYSRL PSEAVFANCS GMLVVVFGLL VLYILLASSW KRPELGMQAE 251 300 ENSP00000398979/1-259 RQ-------- --PLLH--DG E--------- ---------- ---------- ENSBTAP00000024228/1-265 RE-------- -PTRTRGRAG T--------- ---------- --------PE bmy_17455T0/1-357 RQGKCSLIFS KDGLEHDEGG PVARRGVTQE GAARSSRWCG LDSFSSALPG ENSTTRP00000010500/1-242 RQ-------- --ALLH--GG E--------- ---------- ---------- 301 350 ENSP00000398979/1-259 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024228/1-265 VMLEGERGLA EPLLQKRS-- ---------- ---------- ---------- bmy_17455T0/1-357 ALVQSPLASV VDLLSPQLAA QMLSLVALAX PPLLGTDFSG RSFTPGPPCP ENSTTRP00000010500/1-242 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000398979/1-259 ---------- ---------- ---------- ---------- -- ENSBTAP00000024228/1-265 ---------- ---------- ---------- ---------- -- bmy_17455T0/1-357 GCSRRSCSYE VKLVSPHTPR DVVENPESSD DLGIKCNPYH EK ENSTTRP00000010500/1-242 ---------- ---------- ---------- ---------- --