KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:43 2014 Check: 00 .. Name: ENSTTRP00000015234/1-368 Len: 398 Check: 7799 Weight: 1.00 Name: ENSP00000339256/1-368 Len: 398 Check: 5736 Weight: 1.00 Name: ENSBTAP00000024232/1-383 Len: 398 Check: 4129 Weight: 1.00 Name: bmy_10838T0/1-193 Len: 398 Check: 9603 Weight: 1.00 Name: BACU020404/1-352 Len: 398 Check: 3802 Weight: 1.00 // 1 50 ENSTTRP00000015234/1-368 MAAPPPRGPG AAASAALDEL SRNLTYGALG AGNGSLSGAW YRR-QIHLFG ENSP00000339256/1-368 MAAVAPAGPG DSASAALDEL SLNFTYGAPG AGNGSLSGDW YRRNQIHLFG ENSBTAP00000024232/1-383 MAAPAPGEPG AAASAVLDEL ARNFTYGAQG AGNGSLSGAW YRRNQIHLFG bmy_10838T0/1-193 ---------- ---------- ---------- ---------M Y--------- BACU020404/1-352 -----PGGPG AAASAALDEL SRNLTYGALG AGNGSLSGAW YRRNQIHLFG 51 100 ENSTTRP00000015234/1-368 VLLAILGNLV ISVSLNIQKY SHLQLAHQEH PRPHFKSVLW WSGIILMAVG ENSP00000339256/1-368 VLLAILGNLV ISISLNIQKY SHLQLAQQEH PRPYFKSVLW WGGVLLMAVG ENSBTAP00000024232/1-383 VLLAILGNLV ISISLNIQKY SHLRLAQQEH PRPYFRSVLW WGGVILMALG bmy_10838T0/1-193 ---------- ------FQKY SHLQLAHQEH PRPYFKSVLW WGGIILMAVG BACU020404/1-352 VLLAILGNLV ISISLNIQKY SHLQLAHQEH PRPYFKSVLW WGGIILMAVG 101 150 ENSTTRP00000015234/1-368 ETGNFAAYGF APITLIAPLG CMSVTGSAII SVMFLKENLR ASDLLGMTLA ENSP00000339256/1-368 ETGNFAAYGF APITLIAPLG CVSVTGSAII SVTFLKDNLR ASDLLGTTLA ENSBTAP00000024232/1-383 EMGNFVAYGV APITLIAPLG CMSVTGSAIT SVMFLRENLR ASDLIGMTLA bmy_10838T0/1-193 ETGNFAAYGF APITLIAPLG CMSVTGSAII SVMFLKENLR ASDL------ BACU020404/1-352 ETGNFAAYGF APITLIAPLG CMSVTGSAII SVMFLKENLR ASDLLGMTLA 151 200 ENSTTRP00000015234/1-368 FAGTYLLVNF APNITQDISA RTVQYSFVGW QFMTYGILEI LIFCILLYFH ENSP00000339256/1-368 FAGTYLLVNF APNITQAISA RTVQYYLVGW QFLIYVILEI LIFCILLYFY ENSBTAP00000024232/1-383 LAGTYLLVNF APNITQAISA RTVQYYFVGW QFMIYMILEI LVFCILLYFH bmy_10838T0/1-193 ---------- ---------- ---------- ---------- ---------- BACU020404/1-352 FAGTYLLVNF APNITQDISA RTVQYYFVGW QFMTYGILEI LIFCILLYFH 201 250 ENSTTRP00000015234/1-368 KRKGMKHIVI LLTLVALLXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000339256/1-368 KRKGMKHMVI LLTLVAILAS LTVISVKAVS GMITFSVMDK MQLTYPIFYI ENSBTAP00000024232/1-383 KRKGMKHIVI LLTLVALLAS VTVISVKAVS GMITFSVTDK MQLTYPIFYI bmy_10838T0/1-193 ---------- -------LAS LTVISVKAVS GMITFSVTDK MQLTYPIFYI BACU020404/1-352 KRKGIKHIAI LLTLVALLAS LTVISVKAVS GMITFSVTDK MQLTYPIFYI 251 300 ENSTTRP00000015234/1-368 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXIIFYKE ENSP00000339256/1-368 MFIIMIASCV FQVKFLNQAT KLYNTTTVVP VNHIFFTISA IIAGIIFYQE ENSBTAP00000024232/1-383 MCIIMIASCV FQVKLLNQAT KLYNTATVVP VNHIFFTISA IIAGIIFYQE bmy_10838T0/1-193 MFIIMIASCV FQVKLLNQAT KLYNTATVVP INHTFFTISA IIAG----KQ BACU020404/1-352 MCIIMIASCV FQVKLLNQAT KLYSTATVVP VNHTFFTISA IIAGIIFYQE 301 350 ENSTTRP00000015234/1-368 FLGATFLTIF IYLFGCFLSF LGVVLVTRNR GKERLPQSYI DIGHVP---- ENSP00000339256/1-368 FLGAPFLTVF IYLFGCFLSF LGVFLVTRNR EKEHLQQSYI DFGNIP---- ENSBTAP00000024232/1-383 FLGAAFLTIF IYLFGCFLSF LGVVLVTRNR EKEHLPQPYI DFGNVPGKQI bmy_10838T0/1-193 ML-------- ---------- ---------- DKIQPDSNGL SYGTLP---- BACU020404/1-352 FLGAAFLTIF IYLFGCFLSF LGVVLVTRNR EKEHLPQSYI DFGHVPG--- 351 400 ENSTTRP00000015234/1-368 ---------- -------DRT --------LG REVWRETNIG QNTARFKR ENSP00000339256/1-368 ---------- -------DTT --------PE RKAWRETNVG QNTTRFT- ENSBTAP00000024232/1-383 LDKIQPDSSG LSYGTLPDGS DSIKSPNEEK KGV------- -------- bmy_10838T0/1-193 ---------- -------DGS DSTKSPSGEK KEV------- -------- BACU020404/1-352 ---------- -------DRT --------LG REVWR----- --------