KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:45 2014 Check: 00 .. Name: bmy_08559T0/1-508 Len: 544 Check: 4880 Weight: 1.00 Name: BACU018362/1-434 Len: 544 Check: 8451 Weight: 1.00 Name: ENSTTRP00000000396/1-441 Len: 544 Check: 4200 Weight: 1.00 Name: ENSP00000362353/1-463 Len: 544 Check: 4618 Weight: 1.00 Name: ENSBTAP00000024254/1-465 Len: 544 Check: 4812 Weight: 1.00 // 1 50 bmy_08559T0/1-508 MSPRQPVSLR EVSYKPPTQL KSGQDYPETR SSRWPKPVEF GALRSPGDQE BACU018362/1-434 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000396/1-441 ---------- ---------- ---------- ---------- ---------- ENSP00000362353/1-463 ---------- ---------- ---------- ---------- -MAGAPGPLR ENSBTAP00000024254/1-465 ---------- ---------- ---------- ---------- -MRHSPSFTH 51 100 bmy_08559T0/1-508 TKSVWGGLGI KERSVGPKGP PFLSSPQ-GA TVSLSETVEK WREYRRQCQR BACU018362/1-434 ---------- ---------- -----PQ-GA TVSLSETVEK WREYRRQCQR ENSTTRP00000000396/1-441 ---------- ---------P ----RPQ-GA TVSLSETVEK WREYQRQCQR ENSP00000362353/1-463 LALLLLGM-- ----VGRAGP ----RPQ-GA TVSLWETVQK WREYRRQCQR ENSBTAP00000024254/1-465 PNSILSVA-- ----MGWTFT ----TPQGGA TVSLSETVQK WREYRRQCQR 101 150 bmy_08559T0/1-508 FLTEAPPPAT GLFCNRTFDD YACWPDGPPG SFVNVSCPWY LPWAS----- BACU018362/1-434 FLTEAPPPAT G--PQGSFIE HLLYSVIYAS CAI---CPHK ALWAGDQPHF ENSTTRP00000000396/1-441 FLTEAPPPAT XXXXXXXXXX X--XXXXXXX XXXXXXXXXX XXXXX---XX ENSP00000362353/1-463 SLTEDPPPAT DLFCNRTFDE YACWPDGEPG SFVNVSCPWY LPWAS----- ENSBTAP00000024254/1-465 FLTEAPPPAA DLFCNRTFDD YACWPDGSPG SFVNVSCPWY LPWAS----- 151 200 bmy_08559T0/1-508 SVLQGHVYRF CTTDGLWLHK DNSSLPWRDL SECEESKRGD RNSPEQQLLS BACU018362/1-434 TVLQGHVYRF CTTDGLWLHK DNSSLPWRDL SECEESKRGD RNSPEQQLLS ENSTTRP00000000396/1-441 XXLQGHVYRF CTTDGLWLHK DNSSLPWRDL SECEESKRGD QNSPEQQLLS ENSP00000362353/1-463 SVPQGHVYRF CTAEGLWLQK DNSSLPWRDL SECEESKRGE RSSPEEQLLF ENSBTAP00000024254/1-465 SVLQGHVYRF CTADGLWLHK DNSSLPWRDL SECEDSKRGD RSSPEQQLLS 201 250 bmy_08559T0/1-508 LYIIYTVGYA LSFSALVIAS AILLGFRHLH CTRNYIHLNL FASFILRALS BACU018362/1-434 LYIIYTVGYA LSFSALVIAS AILLGFRHLH CTRNYIHLNL FASFILRALS ENSTTRP00000000396/1-441 LYVIYTVGYA LSFSALVIAS AILLGFRHLH CTRNYIHLNL FASFILRALS ENSP00000362353/1-463 LYIIYTVGYA LSFSALVIAS AILLGFRHLH CTRNYIHLNL FASFILRALS ENSBTAP00000024254/1-465 LYVIYTVGYA LSFSALVIAS AILLGFRHLH CTRNYIHLNL FASFILRALS 251 300 bmy_08559T0/1-508 VFIKDAALKW MYSMAAQQHQ WDGLLSYQDS LGCRLVFLLM QYCVAANYYW BACU018362/1-434 VFVKDAALKW MYSTAAQQHQ WDGLLSYQDS LGCRLVFLLM QYCVAANYYW ENSTTRP00000000396/1-441 VFIKDAALKW MYSTAAQQHQ WDGLLSSQDS LGCRLAFLLM QYCVAANYYW ENSP00000362353/1-463 VFIKDAALKW MYSTAAQQHQ WDGLLSYQDS LSCRLVFLLM QYCVAANYYW ENSBTAP00000024254/1-465 VFIKDTVLKW MYSTAAQQHQ WDGLLSYQES LGCRLVFLLM QYCVAANYYW 301 350 bmy_08559T0/1-508 LLVEGVYLYT LLALSVFSEQ RIFRLYLSIG WGVPLLFVIP WGIVKYLYED BACU018362/1-434 LLVEGVYLYT LLALSVFSEQ RIFRLYLSIG WGVPLLFVIP WGIVKYLYED ENSTTRP00000000396/1-441 LLVEGVYLYT LLAFAVFSEQ RIFRLYLSIG WGVPLLFVIP WGIVKYLYED ENSP00000362353/1-463 LLVEGVYLYT LLAFSVLSEQ WIFRLYVSIG WGVPLLFVVP WGIVKYLYED ENSBTAP00000024254/1-465 LLVEGVYLYS LLALSVFSEQ RVFRLYLSIG WGVPLLFVIP WGIVKYLYED 351 400 bmy_08559T0/1-508 EGCWTRNSNM NYWLIIRLPI LFAIGVNFLI FVRVICIVVS KLKANLMCKT BACU018362/1-434 EGCWTRNSNM NYWLIIRLPI LFAIGVNFLI FVRVICIVVS KLKANLMCKT ENSTTRP00000000396/1-441 EGCWTRNSNM NYWLIIRLPI LFAIGVNFLI FVRVICIVVS KLKTNLMCKT ENSP00000362353/1-463 EGCWTRNSNM NYWLIIRLPI LFAIGVNFLI FVRVICIVVS KLKANLMCKT ENSBTAP00000024254/1-465 EGCWTRNSNM NYWLIIRLPI LFAIGVNFLI FVRVICIVVS KLQANLMCKT 401 450 bmy_08559T0/1-508 DTKCRLAKST LTLIPLLGTH E--------- ---------- ---------- BACU018362/1-434 DTKCRLAKST LTLIPLLGTH EVIFAFVMDE HARGMLRFIK LFTELSFTSF ENSTTRP00000000396/1-441 DTKCRLAKST LTLIPLLGTH EVIFAFVMDE HARGMLRFIK LFTELSFTSF ENSP00000362353/1-463 DIKCRLAKST LTLIPLLGTH EVIFAFVMDE HARGTLRFIK LFTELSFTSF ENSBTAP00000024254/1-465 DIKCRLAKST LTLIPLLGTH EVIFAFVMDE HARGVLRFVK LFTELSFTSF 451 500 bmy_08559T0/1-508 -GLMVAILYC FVNNEWAAVC TQPPARPPAA KTPAPALPVV SLPAGQPSQT BACU018362/1-434 QGLMVAILYC FVNNE----- ----VRPAEG RGAL-HLHIQ RDSSMKPFK- ENSTTRP00000000396/1-441 QGLMVAILYC FVNNE----- IQMEFRKTWE RWRLEHLHIQ RESSMKPFK- ENSP00000362353/1-463 QGLMVAILYC FVNNE----- VQLEFRKSWE RWRLEHLHIQ RDSSMKPLK- ENSBTAP00000024254/1-465 QGLMVAILYC FVNNE----K VQMEFRKSWE RWQLEHLHVQ RENSMKPFK- 501 550 bmy_08559T0/1-508 GKWALPPGTC GHIFSEEKRP VNLITVAGGE EKVIAAETRR ISSC BACU018362/1-434 ---------C ---------P TSSLSCEGTV GSSVYAASCQ ASCS ENSTTRP00000000396/1-441 ---------C ---------P TSSLSCEGTV GSSVYAASCQ ASCS ENSP00000362353/1-463 ---------C ---------P TSSLSSGATA GSSMYTATCQ ASCS ENSBTAP00000024254/1-465 ---------C ---------P TSSLSCGATA GSSVYAASCQ TSCS