KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:47 2014 Check: 00 .. Name: bmy_04855T0/1-288 Len: 526 Check: 8839 Weight: 1.00 Name: BACU003993/1-221 Len: 526 Check: 6343 Weight: 1.00 Name: ENSP00000380781/1-441 Len: 526 Check: 9028 Weight: 1.00 Name: ENSTTRP00000006023/1-492 Len: 526 Check: 9789 Weight: 1.00 Name: ENSBTAP00000024262/1-511 Len: 526 Check: 5599 Weight: 1.00 // 1 50 bmy_04855T0/1-288 -MLPACRLQD EFHPFIEALL PHVRAFSYTW FNLQARKRKY FKKHEKRMSK BACU003993/1-221 -MLPACRLQD EFHPFIEALL PHVRAFAYTW FNLQARKRKY FKKHEKRMSK ENSP00000380781/1-441 MYSPYCLTQD EFHPFIEALL PHVRAFSYTW FNLQARKRKY FKKHEKRMSK ENSTTRP00000006023/1-492 ---------D EFHPFIEALL PHVRAFSYTW FNLQARKRKY FKKHEKRMSK ENSBTAP00000024262/1-511 RMLPACRLQD EFHPFIEALL PHVRAFSYTW FNLQARKRKY FKKHEKRMSK 51 100 bmy_04855T0/1-288 DEERAVKDEL LGEKPEIKQK WASRLLAKLR KDIRPEFRED FVLTITGKKP BACU003993/1-221 DEERAVKDEL LGEKPEIKQK WASRLLAKLR KDIRPEFRED FVLTITGKKP ENSP00000380781/1-441 DEERAVKDEL LGEKPEIKQK WASRLLAKLR KDIRPEFRED FVLTITGKKP ENSTTRP00000006023/1-492 DEERAVKDEL LGEKPEIKQK WASRLLAKLR KDIRPEFRED FVLTITGKKP ENSBTAP00000024262/1-511 DEERAVKDEL LGEKPEIKQK WASRLLAKLR KDIRPEFRED FVLTITGKKP 101 150 bmy_04855T0/1-288 PCCVLSNPDQ KGKIRRIDCL RQADKVWRLD LVMVILFKGI PLESTDGERL BACU003993/1-221 PCCVLSNPDQ KGKIRRIDCL RQADKVWRLD LVMVILFKGI PLESTDGERL ENSP00000380781/1-441 PCCVLSNPDQ KGKIRRIDCL RQADKVWRLD LVMVILFKGI PLESTDGERL ENSTTRP00000006023/1-492 PCCVLSNPDQ KGKIRRIDCL RQADKVWRLD LVMVILFKGI PLESTDGERL ENSBTAP00000024262/1-511 PCCVLSNPDQ KGKIRRIDCL RQADKVWRLD LVMVILFKGI PLESTDGERL 151 200 bmy_04855T0/1-288 YKSPQCSNPG LCVQPHHIGV TIKELDLYLA YFVHTP--GQ IFDCCQHGAE BACU003993/1-221 YKSPQCSNPG LCVQPHHIGV TIKELDLYLA YFVHTP---- ---------- ENSP00000380781/1-441 YKSPQCSNPG LCVQPHHIGV TIKELDLYLA YFVHTPESGQ SDSSNQQGDA ENSTTRP00000006023/1-492 YKSPQCSNPG LCVQPHHIGV TIKELDLYLA YFVHTPESGQ SDSSNQQGDA ENSBTAP00000024262/1-511 YKSPQCSNPG LCVQPHHIGV TIKELDLYLA YFVHTPESGQ SDSSNQQGDA 201 250 bmy_04855T0/1-288 NLIWAELVVP GLMTSKVDMM YKSFVVFAVC FRTWGFAVST GFLVQGRAPR BACU003993/1-221 ---------- ---------- ---------- ---------- ---------- ENSP00000380781/1-441 D--------- ------IKPL PNGHLSFQDC FVTSGVWNVT ELVRVSQTPV ENSTTRP00000006023/1-492 D--------- ------IKPL PNGHLSFQDC FVTSGVWNVT ELVRVSQ-PV ENSBTAP00000024262/1-511 D--------- ------IKPL PNGHLSFQDC FVTSGVWNVT ELVRVSQTPV 251 300 bmy_04855T0/1-288 LR---PSSAV EGITSPCQ-- ---------- ---------- ---------- BACU003993/1-221 --------AV EGIASPCQ-- ---------- ---------- ---------- ENSP00000380781/1-441 ATASGPNFSL ADLESPSYYN INQVTLGRRS ITSPPSTSTT KRPKSIDDSE ENSTTRP00000006023/1-492 ATASGPNFSL ADLESPSYYN INQVTLGRRS ITSPPSTSTT KRPKSIDDSE ENSBTAP00000024262/1-511 ATASGPNFSL ADLESPSYYN INQVALGRRS ITSPPSTSTT KRPKSIDDSE 301 350 bmy_04855T0/1-288 ---PCQDV-- ---------- ---------- ---------- ---------- BACU003993/1-221 ---PCQDV-- ---------- ---------- ---------- ---------- ENSP00000380781/1-441 MESPVDDVFY PGTGRSPAAG SSQSSGWPND VDA---GPAS LKKSGKLDFC ENSTTRP00000006023/1-492 MESPVDDVFY PGTGRSPAAG SSQSSGWPND VDA---GPAS LKKSGKLDFC ENSBTAP00000024262/1-511 MESPVDDVFY PGTGRSPAAG SSQSSGWPND VDAGLPGPAS LKKSGKLDFC 351 400 bmy_04855T0/1-288 ---------- ---------- ---------- ---ADASDVP QAF------- BACU003993/1-221 ---------- ---------- ---------- ---ADASHVP QAF------- ENSP00000380781/1-441 SALSSQGSSP RMAFTHHPLP VLAGVRPGSP RATASALHFP STSIIQQSSP ENSTTRP00000006023/1-492 SALSSQGSSP RMAFTHHPLP VLAGVRPGSP RATASALHFP STSIIQQSSP ENSBTAP00000024262/1-511 SALSSQGSSP RMAFTHHPLP VLAGVRPGSP RATASALHFP STSIIQQSSP 401 450 bmy_04855T0/1-288 ---------- ----AGCLAR LVALV----- ---------- ---------- BACU003993/1-221 ---------- ----AGCLAR LVALV----- ---------- ---------- ENSP00000380781/1-441 YFTHPTIRYH HHHGQDSLKE FVQFVCSDGS GQATGQ---- ----HSQRQA ENSTTRP00000006023/1-492 YFTHPTIRYH HHHGQDSLKE FVQFVCSDGS GQATGQ---- -PNGSGQGKV ENSBTAP00000024262/1-511 YFTHPTIRYH HHHGQDSLKE FVQFVCSDGS GQATGQVETR GPNGSGQGKV 451 500 bmy_04855T0/1-288 ---------- ---------- ---------- ---------- ---------- BACU003993/1-221 ---------- ---------- ---------- ---------- ---------- ENSP00000380781/1-441 P--------- ------PLP- ---------- ---------- ----TGLSAS ENSTTRP00000006023/1-492 PGSFLLPPPP PVARPVPLPM PDSKSTSTAP DGAALTPPSP SFATTGASSA ENSBTAP00000024262/1-511 PGSFLLPPPP PVARPVPLPM PDSKSTSTAP DGAALTPPSP SFATTGASSA 501 550 bmy_04855T0/1-288 ---------- ---------- ------ BACU003993/1-221 ---------- ---------- ------ ENSP00000380781/1-441 D------PGT ATF------- ------ ENSTTRP00000006023/1-492 NRFVSIGPRD GNFLNIPQQS QSWFL- ENSBTAP00000024262/1-511 NRFVSIGPRD GNFLNIPQQS QAWWKG