KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:48 2014 Check: 00 .. Name: ENSP00000232744/1-478 Len: 480 Check: 5288 Weight: 1.00 Name: ENSBTAP00000024279/1-470 Len: 480 Check: 2901 Weight: 1.00 Name: ENSTTRP00000016219/1-453 Len: 480 Check: 7600 Weight: 1.00 Name: bmy_17087T0/1-305 Len: 480 Check: 2675 Weight: 1.00 Name: BACU020534/1-452 Len: 480 Check: 3435 Weight: 1.00 // 1 50 ENSP00000232744/1-478 MDTSDLFASC RKGDVGRVRY LLEQRDVEVN VRDKWDSTPL YYACLCGHEE ENSBTAP00000024279/1-470 MDTCDLFSSC RKGDVGRVRY LLEQRDVEVN VRDKWDSTPL YYACLCGHEE ENSTTRP00000016219/1-453 ---------- ---------Y LLEQRDVEVN VRDKWDSTPL YYACLCGHEE bmy_17087T0/1-305 ---------- ---------- ---------- ---------- ---------- BACU020534/1-452 ---------- ---------Y LLEQRDVEVN VRDKWDSTPF CGGQPHGPAD 51 100 ENSP00000232744/1-478 LVLYLLANGA RCEANTFDGE RCLYGALSDP IRRALRDYKQ VTASCRRRDY ENSBTAP00000024279/1-470 LVLYLLAHGA RCEANTFDGE RCLYGAQSDA IRRALRDYRQ VTASFWRRDL ENSTTRP00000016219/1-453 LVLYLLANGA RCEANTFDGE RCLYGAQSEA IRRALRDYKQ VTASYRRRDY bmy_17087T0/1-305 ---------A RCEANTFDGE RCLYGAQSDA IRRALRDYKQ VTASYRRRDC BACU020534/1-452 WTA-LLSPGA RCEANTFDGE RCLYGAQSDA IRRALRDYKQ VTASYRRRDC 101 150 ENSP00000232744/1-478 YDDFLQRLLE QGIHSDVVFV VHGKPFRVHR CVLGARSAYF ANMLDTKWKG ENSBTAP00000024279/1-470 YYSFLLRLLE QGLHSDVVFV VHGRAFRAHR GVLGARSTYF AHMLDTKWKG ENSTTRP00000016219/1-453 YYSCLLRLLE QGIHSDVVFL VHGKSFRAHR CILGARSTYF AHMLDTKWKG bmy_17087T0/1-305 YCGFLLRLLE QGIHSDVVFL VHGKSFRAHR CILGARSTYF AHMLDTKWKG BACU020534/1-452 YYRFLLRLLE QGIHSDVVFL VPGKSFPAHR CILGARSTYF AHMLDTKWKG 151 200 ENSP00000232744/1-478 KSVVVLRHPL INPVAFGALL QYLYTGRLDI GVEHVSDCER LAKQCQLWDL ENSBTAP00000024279/1-470 RSAVVLRHPL INPVAFGALL QYLYTGCLDV GVEHVSDCER LARQCQLWGL ENSTTRP00000016219/1-453 LWAGVNGYPL INPVAFGALL QYLYTGCLDV GVEHVGDCER LAKQCQLWDL bmy_17087T0/1-305 KSVVVLRHPL INPVAFGALL QYLYTGCLDI GVEHVGDCER LAKQCQLWDL BACU020534/1-452 KSVVVLRHPL INPVAFGALL QYLYTGCLDV GVEHVGDCER LAKQCQLWDL 201 250 ENSP00000232744/1-478 LSDLEAKCEK VSEFVASKPG TCVKVLTIEP PPADPRLRED MALLADCALP ENSBTAP00000024279/1-470 LGGLEAK--- ----QASKPG VCMKVLTIEP PQADLQLRED LALLADCALP ENSTTRP00000016219/1-453 LGDLEAKCE- ----LASKPG TCVKVLTIEP PQVDPRLRED LALLADCALP bmy_17087T0/1-305 LGDLEAK--- ----LASKPG TCVKVLTIEP PQADPRLRED LALLADCALP BACU020534/1-452 LGDLEAKCE- ----LASKPG TCVKVLTIEP PQADPRLRED LALLADCALP 251 300 ENSP00000232744/1-478 PELRGDLWEL PFPCPDGFNS CPDICFRVAG CSFLCHKAFF CGRSDYFRAL ENSBTAP00000024279/1-470 PELRGDLGEL PFPC-DGLSS CPDVCFRVGG YDFLCHKAFF CGRSEYFRAL ENSTTRP00000016219/1-453 PELRGDLGEL PFPC-DGFSS CPDVCFRVDG YSFLCHKAFF CGRSDYFRAL bmy_17087T0/1-305 PELRGDLGEL PFPC-DGFSS CPDVCFRVDG YSFLCHKAFF CGRSDYFRAL BACU020534/1-452 PELRGDLGEL PFPC-DGFSS CPDVCFRVGG YSFLCHKAFF CGRSDYFRAL 301 350 ENSP00000232744/1-478 LDDHFRESEE PATSGGPPAV TLHGISPDVF THVLYYMYSD HTELSPEAAY ENSBTAP00000024279/1-470 LDDHFQESEQ LEASGGLPAV TLHSVSPEVF THVLYYVYSD HTELPPELAY ENSTTRP00000016219/1-453 LDDHFRENEE LEASGGLLAI TLHDVSPAVF THVLYYVYSD DTELPPELAY bmy_17087T0/1-305 LDDHFRENEE LEASGGLLAI TLHDISPDIF THVLYYIYGD HTEV------ BACU020534/1-452 LDDHFRENEE LEASGGLLAI TLHDISPDIF THVLYYIYGD HTELPPELAY 351 400 ENSP00000232744/1-478 DVLSVADMYL LPGLKRLC-- GRSLAQMLDE DTVVGVWRVA KLFRLARLED ENSBTAP00000024279/1-470 DVLSVADMYL LPGLKQLC-- GRSLAQLLDE DSVVGVWRVA KLFGLARLED ENSTTRP00000016219/1-453 DVLSVADMYL LPGLKQLC-- GRGLAQLLDE DSVVGVWRVA KLFGLARLED bmy_17087T0/1-305 ---------- -------CAL GRG------- ---------- ---------- BACU020534/1-452 DVLRVADMYL LPGLKQLC-- GRGLAQLLDE DSVVGVWRVA KLFGLARLED 401 450 ENSP00000232744/1-478 QCTEYMAKVI EKLVEREDFV EAVKEEAAAV AARQETDSIP LVDDIRFHVA ENSBTAP00000024279/1-470 QCTKYMARVI EKLVQQEDFV EAVREEAAAV AGRQETDSIP LVDDIRFHMG ENSTTRP00000016219/1-453 QCTKYMAKVI EKLLEREDFV EAVKEEAAAV TARQETDSIP LVDDIRFHLG bmy_17087T0/1-305 -GGRYTGHV- ---------- ---------- -------TMG LRGSAQVWTG BACU020534/1-452 QCTKYMAKVL EKLAGQRDFV EAVREEAAAV TARQETDSIP LVDDIRFHVG 451 500 ENSP00000232744/1-478 STVQTYSAIE EAQQRLRALE DLLVSIGLDC ENSBTAP00000024279/1-470 SLVQTCHAME QAAQRLRVLE ELLVSIGLDC ENSTTRP00000016219/1-453 STAQTCSAME QAERQLRALE DLLASVGLDC bmy_17087T0/1-305 S--------- ---------- ---------- BACU020534/1-452 STVQTCSAME QAERRLRVLE DLLVSIGLDC