KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:48 2014 Check: 00 .. Name: ENSP00000308032/1-504 Len: 559 Check: 7534 Weight: 1.00 Name: ENSTTRP00000005411/1-551 Len: 559 Check: 1322 Weight: 1.00 Name: ENSBTAP00000024282/1-441 Len: 559 Check: 2138 Weight: 1.00 Name: bmy_11305T0/1-481 Len: 559 Check: 8109 Weight: 1.00 Name: BACU001434/1-491 Len: 559 Check: 5507 Weight: 1.00 // 1 50 ENSP00000308032/1-504 MEATGTWALL LALALLLLLT LALSGTRARG HLPPGPTPLP LLGNLLQLRP ENSTTRP00000005411/1-551 MEAAGTWALL LLL-ALLLLA LALPGTRMRG HLPPGPTPLP LLGNLLQLRP ENSBTAP00000024282/1-441 ---------- ---------- ---------- ---------- ---------- bmy_11305T0/1-481 MEAAGTWALL LVL-LLLVLT LALPGTRTRG HLPPGPTPLP LLGNLLQLRP BACU001434/1-491 MEAAGTWALL LVL-LLLVLT LALPGTRTRG HLPPGPTPLP LLGNLLQLRP 51 100 ENSP00000308032/1-504 GALYSGLMRL SKKYGPVFTI YLGPWRPVVV LVGQEAVREA LGGQAEEFSG ENSTTRP00000005411/1-551 GALYLGLLRX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000024282/1-441 ----LGLCRL SKKYGPVFTV YLGPWRRVVV LVGHEAVQEA LGGQAEEFSG bmy_11305T0/1-481 GALYLGLLRL SKKYGPVFTV YLGPWRRVVV LVGREAVQEA LGGQAEAFSG BACU001434/1-491 GALYLGLLRL SKKYGPVFTV YLGPWRRVVV LVGREAVQEA LGGQAEAFSG 101 150 ENSP00000308032/1-504 RGTVAMLEGT FDGHGVFFSN GERWRQLRKF TMLALRDLGM GKREGEELIQ ENSTTRP00000005411/1-551 XXXXXXXXXX XXXXXVFFSN GERWRQLRKF TTLALRDLGM GKREGEELIQ ENSBTAP00000024282/1-441 RGTVATLDGT FDSHGVFFSN GERWRQLRKF TTLALRDLGM GKREGEELIQ bmy_11305T0/1-481 R--------- ----GVFLSN GERWRQLRKF TTLALRDLGM GKQEGEQLIR BACU001434/1-491 RGLVATVNGT FDGHGVLFSN GERWRQLRKF TTLALRDLGM GKREGEELIQ 151 200 ENSP00000308032/1-504 AEARCLVETF QGTEGRPFDP SLLLAQATSN VVCSLLFGLR FSYEDKEFQA ENSTTRP00000005411/1-551 AEAQCLVEAL RRTKGWPFDP SLLLAQATSN IICSLVFRLR FPYDDKEFQA ENSBTAP00000024282/1-441 AEARCLVEAL QGTKGRPFDP SLLLAQATCN IICSLVFDLR LPYDNEEFQA bmy_11305T0/1-481 VEAQCLVEAL RRTRGSPFEP SLLLAQATSN IICSLIFRLR FPYDNEEFKA BACU001434/1-491 AEAQCLVEAL RRTRGSPFEP SLLLAQATSN IICSLVFRLR FPYDNEEFKA 201 250 ENSP00000308032/1-504 VVRAAGGTLL GVSSQGGQTY EMFSWFLRPL PGPHKQLLHH VSTLAAFTVR ENSTTRP00000005411/1-551 LVQAASGIVV GVSSPWAQTY EMFSRLLQHL PGPYTQLLGQ VCTVAAFATQ ENSBTAP00000024282/1-441 VVRAAGGIAV GVSSPWGQTY EMFSRFLQRL PGPHTQLLRH LGTVAAFAAQ bmy_11305T0/1-481 MVRAAGGIVV GVSSPWAQTY EMFSRLLQHL PGPYTQLFGQ VRTVAAFAVQ BACU001434/1-491 MVRAAGGIVV GVSSPWAQTY EMFSRLLQHL PGPYTQLFGQ VRTVAAFAVQ 251 300 ENSP00000308032/1-504 QVQQHQGNLD ASGPARDLVD AFLLKMAQEE QNPGTEFTNK NMLMTVIYLL ENSTTRP00000005411/1-551 QIQRHQRTLD ASGPARDVVD AFLLKMAKEK QDPNTEFTDK NLLMTVIYLL ENSBTAP00000024282/1-441 QVWQHKGSLG TSGPVRDLVD AFLLKMAKEK QDPNTEFTAK NLLMTVVYLL bmy_11305T0/1-481 QIQRHQRSLD ASGPARDLVD AFLLKMAKEK QDPNTEFTDK NLLMTVVYLL BACU001434/1-491 QIQRHQRSLD TSGPTRDLVD AFLLKMAKEK QDPNTEFTDK NLLMTVVYLL 301 350 ENSP00000308032/1-504 FAGTMTVSTT VGYTLLLLMK YPH--VQKWV REELNRELGA GQAPSLGDRT ENSTTRP00000005411/1-551 -AGTVTVS-T IRYTLLLLKS -----QVKRV QAELMRELGP GQVPSLGDRA ENSBTAP00000024282/1-441 FAGTVTVSTT IRYTLLLLLK YPQ--VQERV QEELMRELGA GQRPSLGDRA bmy_11305T0/1-481 FAGTVTVSTT IRYTLLLLLK YPQ--VQERV QEELTRELGP GQAPSLWDRA BACU001434/1-491 FAGTVTVSTT IRYT-----R APAEISSERV QEELTRELGP GQAPSLWDRA 351 400 ENSP00000308032/1-504 RLPYTDAVLH EAQRLLALVP MGIPRTLMRT TRFRGYTLPQ GTEVFPLLGS ENSTTRP00000005411/1-551 RLPYTDAVLH EAQRLLALVP MGVPRALVKT TRFRGYTLPQ GTEVFPLLGS ENSBTAP00000024282/1-441 RLPYTDAVLH EAQRLLALVP MGIPRALTKT TRFRGYTLPQ GTEVFPLLGS bmy_11305T0/1-481 RLPYTDAVLH EAQRLLALVP MGLPRALVKT TRFRGYTLPQ GTEVFPLLGS BACU001434/1-491 RLPYTDAVLH EAQRLLALVP MGLPRALVKT TRFRGYTLPQ GTEVFPLLGS 401 450 ENSP00000308032/1-504 ILHDPNIFKH PEEFNPDRFL DADGRFRKHE AFLPFSLGKR VCLGEGLAKA ENSTTRP00000005411/1-551 ILHDPEVFKQ PEEFNPGRFL DADGKFKKHE AFLPFSLGKR VCLGEGLART ENSBTAP00000024282/1-441 ILHDPAVFEE PKEFNPGRFL DADGKFKKHE AFLPFSLGKR VCLGEGLART bmy_11305T0/1-481 ILHDPEVFKQ PEEFNPGRFL DADGKFKKHK AFLPFSLGKR VCLGEGLART BACU001434/1-491 ILHDPEVFKQ PEEFNPGRFL DADGKFKKHE AFLPFSLGKR VCLGEGLART 451 500 ENSP00000308032/1-504 ELFLFFTTIL QAFSLESPCP PDTLSLKPTV SGLFNIPPAF QLQV------ ENSTTRP00000005411/1-551 ELFLLFTAIL QAFSLGNPCP PGALSLQPAV SGLFNIPQAL AVAMDMAVSA ENSBTAP00000024282/1-441 ELFLLFTAIL QAFSLEGPCP LGALSLQPAI SGLFNIPQAF QLQF------ bmy_11305T0/1-481 ELFLLFTAIL QAFSLGNPCP PGALSLQPAV SGLFNIPQAF QLQF------ BACU001434/1-491 ELFLLFTAIL QAFSLGNPCP PGALSLQPAV SGLFNIPQAF QLQF------ 501 550 ENSP00000308032/1-504 ---------- ---------- ------RPTD LHSTTQTR-- ---------- ENSTTRP00000005411/1-551 YTTGSHLRTP VAVFSRSHSL HIHRVIRPRN HTPRHTHEGH KATATAFYKF ENSBTAP00000024282/1-441 ---------- ---------- ------RPR- ---------- ---------- bmy_11305T0/1-481 ---------- ---------- ------QPR- ---------- ---------- BACU001434/1-491 ---------- ---------- ------QPR- ---------- ---------- 551 600 ENSP00000308032/1-504 --------- ENSTTRP00000005411/1-551 SPSGITTTC ENSBTAP00000024282/1-441 --------- bmy_11305T0/1-481 --------- BACU001434/1-491 ---------