KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:49 2014 Check: 00 .. Name: BACU007468/1-256 Len: 731 Check: 8934 Weight: 1.00 Name: ENSP00000271915/1-731 Len: 731 Check: 2824 Weight: 1.00 Name: ENSBTAP00000024292/1-721 Len: 731 Check: 4573 Weight: 1.00 Name: bmy_09710T0/1-374 Len: 731 Check: 5813 Weight: 1.00 Name: ENSTTRP00000006224/1-721 Len: 731 Check: 5271 Weight: 1.00 // 1 50 BACU007468/1-256 --MSGAWTDN -------RGN MFFPYGG--- ---------- ---------- ENSP00000271915/1-731 MDTSGHFHDS GVGDLDEDPK CPCPSSGDEQ QQQQQQQQQQ QPPPPAPPAA ENSBTAP00000024292/1-721 MDTSGHFHDS GVGDLDEDPK CPCPSSGDE- -QQQQQQQPP PPP-PAPPAA bmy_09710T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006224/1-721 MDTSGHFHDS GVGDLDEDPK CPCPSSGDE- -QQQQQPPPP PPPAPAPPAA 51 100 BACU007468/1-256 ---------- ---------- ---KARRTCQ IEATFAKCSQ ---------- ENSP00000271915/1-731 PQQPLGPSLQ PQPPQLQQQQ QQQQQQQQQQ PPHPLSQLAQ LQSQPVHPGL ENSBTAP00000024292/1-721 PQQPPGPPLQ PQPPQL---- ---QQQQQQQ PQHPLSQLTQ LQSQPVHPGL bmy_09710T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006224/1-721 PQQPPGPPLQ PQPPQL---- ---QQQQQQQ P-HPLSQLAQ LQSQPIHPGL 101 150 BACU007468/1-256 --------RG PPSSNSTAIL HPSSRQGSQL NLNDHLLGHS PTSTATSGPG ENSP00000271915/1-731 LHSSPTAFRA PPSSNSTAIL HPSSRQGSQL NLNDHLLGHS PSSTATSGPG ENSBTAP00000024292/1-721 LHSSPTAFRG PPSSNSTAIL HPSSRQGSQL NLNDHLLGHS PSSTATSGPG bmy_09710T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006224/1-721 LHSSPTAFRG PPSSNSTVIL HPSSRQGSQL NLNDHLLGHS PTSTATSGPG 151 200 BACU007468/1-256 GGGRHRQASP LVHRRDSNPF TEIAMSSCKY SGGVLHALSR LSASRRNLIE ENSP00000271915/1-731 GGSRHRQASP LVHRRDSNPF TEIAMSSCKY SGGVMKPLSR LSASRRNLIE ENSBTAP00000024292/1-721 GGGRHRQASP LVHRRDSNPF TEIAMSSCKY SGGVMKPLSR LSASRRNLIE bmy_09710T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006224/1-721 GGGRHRQASP LVHRRDSNPF TEIAMSSCKY SGGVMKPLSR LSASRRNLIE 201 250 BACU007468/1-256 AEPEGQPLQL FSPSNPPEIV ISSREDNHAH QTLLHHPNAA HNHQHAGATA ENSP00000271915/1-731 AETEGQPLQL FSPSNPPEIV ISSREDNHAH QTLLHHPNAT HNHQHAGTTA ENSBTAP00000024292/1-721 AEPEGQPLQL FSPSNPPEII ISSREDNHAH QTLLHHPNAT HNHQHAGTTA bmy_09710T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006224/1-721 AEPEGQPLQL FSPSNPPEIV ISSREDNHAH QTLLHHPNAA HNHQHAGATA 251 300 BACU007468/1-256 SSTTFPKANK RKNQNIGYKL GHRRALFEKR KRLSDYALIF GMFGIVVMVI ENSP00000271915/1-731 SSTTFPKANK RKNQNIGYKL GHRRALFEKR KRLSDYALIF GMFGIVVMVI ENSBTAP00000024292/1-721 SSATFPKANK RKNQNIGYKL GHRRALFEKR KRLSDYALIF GMFGIVVMVI bmy_09710T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006224/1-721 SSTTFPKANK RKNQNIGYKL GHRRALFEKR KRLSDYALIF GMFGIVVMVI 301 350 BACU007468/1-256 ETELSWGLYS ---------- ---------- ---------- ---------- ENSP00000271915/1-731 ETELSWGLYS KDSMFSLALK CLISLSTIIL LGLIIAYHTR EVQLFVIDNG ENSBTAP00000024292/1-721 ETELSWGLYS KDSMFSLALK CLISLSTIIL LGLIIAYHTR EVQLFVIDNG bmy_09710T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006224/1-721 ETELSWGLYS KDSMFSLALK CLISLSTIIL LGLIIAYHTR EVQLFVIDNG 351 400 BACU007468/1-256 ---------- ---------- ---------- --KFYAT--- ---------- ENSP00000271915/1-731 ADDWRIAMTY ERILYISLEM LVCAIHPIPG EYKFFWTARL AFSYTPSRAE ENSBTAP00000024292/1-721 ADDWRIAMTY ERILYISLEM LVCAIHPIPG EYKFFWTARL AFSYTPSRAE bmy_09710T0/1-374 -------MTY ERILYISLEM LVCAIHPIPG EYKFFWTARL AFSYTPSRAE ENSTTRP00000006224/1-721 ADDWRIAMTY ERILYISLEM LVCAIHPIPG EYKFFWTARL AFSYTPSRAE 401 450 BACU007468/1-256 ------LTVP ---------- ---------- ---------- ---------- ENSP00000271915/1-731 ADVDIILSIP MFLRLYLIAR VMLLHSKLFT DASSRSIGAL NKINFNTRFV ENSBTAP00000024292/1-721 ADVDIILSIP MFLRLYLIAR VMLLHSKLFT DASSRSIGAL NKINFNTRFV bmy_09710T0/1-374 ADVDIILSIP MFLRLYLIAR VMLLHSKLFT DASSRSIGAL NKINFNTRFV ENSTTRP00000006224/1-721 ADVDIILSIP MFLRLYLIAR VMLLHSKLFT DASSRSIGAL NKINFNTRFV 451 500 BACU007468/1-256 ---------- ---------- ---------- ---------- ---------- ENSP00000271915/1-731 MKTLMTICPG TVLLVFSISL WIIAAWTVRV CERYHDQQDV TSNFLGAMWL ENSBTAP00000024292/1-721 MKTLMTICPG TVLLVFSISL WIIAAWTVRV CERYHDQQDV TSNFLGAMWL bmy_09710T0/1-374 MKTLMTICPG TVLLVFSISL WIIAAWTVRV CERYHDQQDV TSNFLGAMWL ENSTTRP00000006224/1-721 MKTLMTICPG TVLLVFSISL WIIAAWTVRV CERYHDQQDV TSNFLGAMWL 501 550 BACU007468/1-256 ---------- ---------- ---------- ---------- -----LALPE ENSP00000271915/1-731 ISITFLSIGY GDMVPHTYCG KGVCLLTGIM GAGCTALVVA VVARKLELTK ENSBTAP00000024292/1-721 ISITFLSIGY GDMVPHTYCG KGVCLLTGIM GAGCTALVVA VVARKLELTK bmy_09710T0/1-374 ISITFLSIGY GDMVPHTYCG KGVCLLTGIM GAGCTALVVA VVARKLELTK ENSTTRP00000006224/1-721 ISITFLSIGY GDMVPHTYCG KGVCLLTGIM GAGCTALVVA VVARKLELTK 551 600 BACU007468/1-256 PQ-------- ---------- ---------W ML-------- ---------- ENSP00000271915/1-731 AEKHVHNFMM DTQLTKRIKN AAANVLRETW LIYKHTKLLK KIDHAKVRKH ENSBTAP00000024292/1-721 AEKHVHNFMM DTQLTKRIKN AAANVLRETW LIYKHTKLLK KIDHAKVRKH bmy_09710T0/1-374 AEKHVHNFMM DTQLTKRIKN AAANVLRETW LIYKHTKLLK KIDHAKVRKH ENSTTRP00000006224/1-721 AEKHVHNFMM DTQLTKRIKN AAANVLRETW LIYKHTKLLK KIDHAKVRKH 601 650 BACU007468/1-256 ---------- ---------- ---------- ---------- ---------- ENSP00000271915/1-731 QRKFLQAIHQ LRSVKMEQRK LSDQANTLVD LSKMQNVMYD LITELNDRSE ENSBTAP00000024292/1-721 QRKFLQAIHQ LRSVKMEQRK LSDQANTLVD LSKMQNVMYD LITELNDRSE bmy_09710T0/1-374 QRKFLQAIHQ LRSVKMEQRK LSDQANTLVD LSKMQNVMYD LITELNDRSE ENSTTRP00000006224/1-721 QRKFLQAIHQ LRSVKMEQRK LSDQANTLVD LSKMQNVMYD LITELNDRSE 651 700 BACU007468/1-256 ---------- ---------- ---------- ---------- ---------- ENSP00000271915/1-731 DLEKQIGSLE SKLEHLTASF NSLPLLIADT LRQQQQQLLS AIIEARGVSV ENSBTAP00000024292/1-721 DLEKQIGSLE SKLEHLTASF NSLPLLIADT LRQQQQQLLS ALMEARGVSV bmy_09710T0/1-374 DLEKQIGSLE SKLEHLTASV NSLPLLIADT LRQQQRQFLS ALTEARGVSV ENSTTRP00000006224/1-721 DLEKQIGSLE SKLEHLTASV NSLPLLIADT LRQQQRQFLS ALTEARGVSV 701 750 BACU007468/1-256 ---------- ---------- ---------- - ENSP00000271915/1-731 AVGTTHTPIS DSPIGVSSTS FPTPYTSSSS C ENSBTAP00000024292/1-721 AVGTTHTPLS DSPIGVSSTS FPTPYTSSSS C bmy_09710T0/1-374 AVGTTHTPLS DSPIGVSSTS FPTPYTSSSS C ENSTTRP00000006224/1-721 AVGTTHTPLS DSPIGVSSTS FPTPYTSSSS C