KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:50 2014 Check: 00 .. Name: BACU016713/1-362 Len: 419 Check: 5196 Weight: 1.00 Name: ENSTTRP00000006960/1-412 Len: 419 Check: 4578 Weight: 1.00 Name: bmy_06115T0/1-238 Len: 419 Check: 4112 Weight: 1.00 Name: ENSP00000268042/1-418 Len: 419 Check: 2595 Weight: 1.00 Name: ENSBTAP00000024295/1-413 Len: 419 Check: 9743 Weight: 1.00 // 1 50 BACU016713/1-362 MDGRRG---- --GVRGGGGL RGPLFEDRRK GCDSSGEAVV GHVLLEAAEP ENSTTRP00000006960/1-412 MGGEAGSA-A VVGPESRVKS LGLVFEDERK GCYSSGDTVA GHVLLEAAEP bmy_06115T0/1-238 MGGEAGSA-A VVGSEGRVKS L--------- ---------- ---------- ENSP00000268042/1-418 MGGEAGCA-A AVGAEGRVKS LGLVFEDERK GCYSSGETVA GHVLLEASEP ENSBTAP00000024295/1-413 MGGEAGSAAA AAGSEGRVKS LGLVFEDERK GCYSSGETVA GHVLLEAAEP 51 100 BACU016713/1-362 VTLRAQRLEA QGRA------ -------ASA ADPAAASGVE SLTVRLSLRE ENSTTRP00000006960/1-412 VTLRALRLEA QGRATAAWGP ------SAGA TAPAAASEVE YLNVRLSLRE bmy_06115T0/1-238 ---------- ---------- ---------- ---------- ---------- ENSP00000268042/1-418 VALRALRLEA QGRATAAWGP STCPRASAST AALAVFSEVE YLNVRLSLRE ENSBTAP00000024295/1-413 VALRALRLEA QGRATASWGS ------SAGA AAPAAASEVE YLNVCLSLRE 101 150 BACU016713/1-362 PPAGEGILLL QPGKHEFPFS FQRPSEPLVT SFTWRYGSVQ HCVRTVLER- ENSTTRP00000006960/1-412 PPAGEGILLL QPGKHEFPFS FQLPSEPLVT SFSGKYGSIR YCVRAVLERP bmy_06115T0/1-238 ---GEGILLL QPGKHEFPFS FQLPSEPLVT SFTGKYGSIQ YCVRAVLERP ENSP00000268042/1-418 PPAGEGIILL QPGKHEFPFR FQLPSEPLVT SFTGKYGSIQ YCVRAVLERP ENSBTAP00000024295/1-413 PPAGEGILLL QPGKHEFPFS FQLPSEPLVT SFTGKYGSIQ YCVRAILERP 151 200 BACU016713/1-362 --PDQIVKRE LQVVSHIDVN PPALLTPVLK TQQKMVGCWF FTSGPVSLSA ENSTTRP00000006960/1-412 QAPDQSIKRE LQVVSHIDVN TPALLTPVLK TQEKMVGCWF FTSGPVSLSA bmy_06115T0/1-238 QAPDQSIKRE LQVVSHIDVN TPALLTPVLK TQEKMVGCWF FTSGPVSLSA ENSP00000268042/1-418 KVPDQSVKRE LQVVSHVDVN TPALLTPVLK TQEKMVGCWF FTSGPVSLSA ENSBTAP00000024295/1-413 QAPDQSVKRE LQVVSHIDVN TPALLTPVLK TQEKMVGCWF FTSGPVSLSA 201 250 BACU016713/1-362 KTERKGYWNG EATPIYAEIG NCSSRLIVPK AAIFQTQTYL ASGKTKT--- ENSTTRP00000006960/1-412 KIERKGYCNX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06115T0/1-238 KIERKGYCNG EAIPIYAEIE NCSSRLIVPK AAIFQTQTYL ASGKTKTVRL ENSP00000268042/1-418 KIERKGYCNG EAIPIYAEIE NCSSRLIVPK AAIFQTQTYL ASGKTKTIRH ENSBTAP00000024295/1-413 KIERKGYCNG EAIPIYAEIE NCSSRLIVPK AAIFQTQTYL ASGKTKTVRL 251 300 BACU016713/1-362 ----VRPRWP TPATRLAWEE AEAMEPHAYY TWEELSRRRA HPEP----HV ENSTTRP00000006960/1-412 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXVYIHI bmy_06115T0/1-238 MVAHVRGNHI ASGSTDTWNG KTLKIPPVTP SILDCCIIRV DYSL------ ENSP00000268042/1-418 MVANVRGNHI ASGSTDTWNG KTLKIPPVTP SILDCCIIRV DYSLAVYIHI ENSBTAP00000024295/1-413 MVANVRGNHI ASGSTDTWNG KTLKIPPVTP SILDCCIIRV HYSLAVYIHI 301 350 BACU016713/1-362 PPGLNREQAW AWALDNFP-- -ALSRPSCRS PRFCEDAHYC ACGLPRRACP ENSTTRP00000006960/1-412 PGAKKLMLEL PVVIGTVPYN GFGSRNSSIA SQFFMDMSWL TLTLPEQPEA bmy_06115T0/1-238 --------AV STALGEIK-- ---------- -----DVAW- ---------- ENSP00000268042/1-418 PGAKKLMLEL PLVIGTIPYN GFGSRNSSIA SQFSMDMSWL TLTLPEQPEA ENSBTAP00000024295/1-413 PGAKKLMLEL PLVIGTVPYN GFGSRNSSVA SQFIMDMSWL TLTLPEQPEA 351 400 BACU016713/1-362 GHADGPQVES GHKRRRDPQV QEPTANPGWS GSPV------ ---------- ENSTTRP00000006960/1-412 PPNYADVVSE EELSRHVPPY PQPPNCEGES CCPMFACIQE FRFQPPPLYS bmy_06115T0/1-238 SHTWCHVTEK MYL------- ---------- ---------- ---------- ENSP00000268042/1-418 PPNYADVVSE EEFSRHIPPY PQPPNCEGEV CCPVFACIQE FRFQPPPLYS ENSBTAP00000024295/1-413 PPNYADVVSE EEFSQHVPPY PQPPNCEGES CCPMFACIQE FRFQPPPLYS 401 450 BACU016713/1-362 KKRPKPHTAG HNRA----- ENSTTRP00000006960/1-412 EVDPHPSDVE ETQPVSFIL bmy_06115T0/1-238 ---------- --------- ENSP00000268042/1-418 EVDPHPSDVE ESQPVSFIL ENSBTAP00000024295/1-413 EVDPHPSDVE ETQPVSFIL