KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:50 2014 Check: 00 .. Name: ENSP00000360154/1-901 Len: 901 Check: 9920 Weight: 1.00 Name: ENSBTAP00000024296/1-784 Len: 901 Check: 2187 Weight: 1.00 Name: bmy_20501T0/1-666 Len: 901 Check: 9492 Weight: 1.00 Name: BACU008848/1-813 Len: 901 Check: 665 Weight: 1.00 Name: ENSTTRP00000005835/1-901 Len: 901 Check: 2181 Weight: 1.00 // 1 50 ENSP00000360154/1-901 MEPPLPVGAQ PLATVEGMEM KGPLREPCAL TLAQRNGQYE LIIQLHEKEQ ENSBTAP00000024296/1-784 MEPPLPIGAQ PLTTIEGMEM KGPLREPCAL TLVQRNGQYE LIIQLHKKEQ bmy_20501T0/1-666 ---------- ---------- ---------- ---------- ---MSYRTEK BACU008848/1-813 ---------- -------MEM KGPVREPCAL TLVQRNGQYE LIIRLHKKEQ ENSTTRP00000005835/1-901 MEPPLPLGVQ PLATIEGMEI KGPVREPCAL TLVQRNGQYE LIIRLHKKEQ 51 100 ENSP00000360154/1-901 HVQDIIPINS HFRCVQEAEE TLLIDIASNS GCKIRVQGDW IRERRFEIPD ENSBTAP00000024296/1-784 RVQDIIPINS HFRCVQEAEE TLLIDIASNS GCKIRIQGDW TGERRFEIPD bmy_20501T0/1-666 AEGKNNTNKA KF-------- -------EQS GCKIRIQGDW TRERRFEIPD BACU008848/1-813 HVQDIIPINS HFRCVQEAEE TLLIDIASNS GCKIRIQGDW TRERRFEIPD ENSTTRP00000005835/1-901 HVQDIIPINS HFRCVQEAEE TLLIDIASNS GCKIRIQGDW TRERRFEIPD 101 150 ENSP00000360154/1-901 EEHCLKFLSA VLAAQKAQSQ LLVPEQKDSS SWYQKLDTKD KPSVFSGLLG ENSBTAP00000024296/1-784 EDHCVKFVSE VLAAQEAQSQ LLVPDQKESS SWYQKLDTKD NSSVFSGLLG bmy_20501T0/1-666 EEHCLKFLSE VLAAQEAQSQ LLVTEQKDSS SWYQKLDTKD NSSVFSGLLG BACU008848/1-813 EEHCLKFLSE VLAAQEAQSQ LLVTEQKDSS SWYQKLDTKD NSSVFSGLLG ENSTTRP00000005835/1-901 EERCLKFLSE VLAAQEAQSQ LLVPEQKDSS SWYQKLDTED NSSVFSGLLG 151 200 ENSP00000360154/1-901 FEDNFSSMNL DKKINSQNQP TGIHREPPPP PFSVNKMLPR EKEASNKEQP ENSBTAP00000024296/1-784 FEDNFSSMNL DKKISLQNQP IGVHREPPPP PSSVNRMLSR EKEASNKEPP bmy_20501T0/1-666 FEDNFSSLNL DKKINLQNQP TGVHREPPPP PSSVNRMLPR EKEASNKEQP BACU008848/1-813 FEDNFSSLNL DKKINLQNQP TGVHREPPPP PSSVNRMLPR EKEASNKEQP ENSTTRP00000005835/1-901 FEDNFSSLNL DKKINLQNQP TGVHREPPPP PSSVNRMLPR EKEASNKEQP 201 250 ENSP00000360154/1-901 KVTNTMRKLF VPNTQSGQRE GLIKHILAKR EKEYVNIQTF RFFVGTWNVN ENSBTAP00000024296/1-784 KVTNTMRKLF VPNTQSGQRE GLIKHILAKR EKEYVNIQTF RFFVGTWNVN bmy_20501T0/1-666 KVTNTMRKLF VPNTQSGQRE GLIKHILAKR EKEYVNIQTF RFFVGTWNVN BACU008848/1-813 KVTNTMRKLF VPNTQSGQRE GLIKHILAKR EKEYVNIQTF RFFVGTWNVN ENSTTRP00000005835/1-901 KVTNTMRKLF VPNTQSGQRE GLIKHILAKR EKEYVNIQTF RFFVGTWNVN 251 300 ENSP00000360154/1-901 GQSPDSGLEP WLNCDPNPPD IYCIGFQELD LSTEAFFYFE SVKEQEWSMA ENSBTAP00000024296/1-784 GQSPDSGLEP WLNCDLNPPD IYCIGFQELD LSTEAFFYFE SVKEQEWSLA bmy_20501T0/1-666 GQSPDSGLEP WLNCDPNPPD IYCIGFQELD LSTEAFFYFE SVKEQEWSLA BACU008848/1-813 GQSPDSGLEP WLNCDPNPPD IYCIGFQELD LSTEAFFYFE SVKEQEWSLA ENSTTRP00000005835/1-901 GQSPDSGLEP WLNCDPNPPD IYCIGFQELD LSTEAFFYFE SVKEQEWSLA 301 350 ENSP00000360154/1-901 VERGLHSKAK YKKVQLVRLV GMMLLIFARK DQCRYIRDIA TETVGTGIMG ENSBTAP00000024296/1-784 VERSLHSKAK YKKVQLVRLV GMMLLIFARK DQLRYIRDVA TETVGTGIMG bmy_20501T0/1-666 VERGLHSKAK YKKVQLVRLV GMMLLIFARK DQWRYIRDVA TETVGTGIMG BACU008848/1-813 VERGLHSKAK YKKVQLVRLV GMMLLIFARK DQWRYIRDVA TETVGTGIMG ENSTTRP00000005835/1-901 VERGLHSKAK YKKVQLVRLV GMMLLIFARK DQWRYIRDVA TETVGTGIMG 351 400 ENSP00000360154/1-901 KMGNKGGVAV RFVFHNTTFC IVNSHLAAHV EDFERRNQDY KDICARMSFV ENSBTAP00000024296/1-784 KMGNKGGVAV RFVFHNTTFC IVNSHLAAHV EEFERRNQDY KDICARMSFV bmy_20501T0/1-666 KMGNKGGVAV RFVFHNTTFC VVNSHLAAHV EDFERRNQDY KDICARMSFV BACU008848/1-813 KMGNKGGVAV RFVFHNTTFC VVNSHLAAHV EDFERRNQDY KDICARMSFV ENSTTRP00000005835/1-901 KMGNKGGVAV RFVFHNTTFC VVDSHLAAHV EDFERRNQDY KDICARMSFV 401 450 ENSP00000360154/1-901 VPNQTLPQLN IMKHEVVIWL GDLNYRLCMP DANEVKSLIN KKDLQRLLKF ENSBTAP00000024296/1-784 VPNQTLPQLN IMKHDVVIWL GDLNYRLCMP DASEVKSLIN KNDLQRLLKF bmy_20501T0/1-666 VPNQTLPQLN IMKHDVVIWL GDLNYRLCMP DANEVKSLIN KNDLQRLLKL BACU008848/1-813 VPNQTLPQLN IMKHDVVIWL GDLNYRLCMP DANEVKSLIN KNDLQRLLKL ENSTTRP00000005835/1-901 VPNQTLPQLN IMKHDVVIWV GDLNYRLCMP DANEVKSLIN KNDLQRLLKL 451 500 ENSP00000360154/1-901 DQLNIQRTQK KAFVDFNEGE IKFIPTYKYD SKTDRWDSSG KCRVPAWCDR ENSBTAP00000024296/1-784 DQLNIQRTQK KAFADFMEGE IKFIPTYKYD SKTDRWDSSG KCRVPAWCDR bmy_20501T0/1-666 DQLNIQRTQK KAFADFMEGE IKFIPTYKYD SKTDRWDSSG KCRVPAWCDR BACU008848/1-813 DQLNIQRTQK KAFADFMEGE IKFIPTYKYD SKTDRWDSSG KCRVPAWCDR ENSTTRP00000005835/1-901 DQLNIQRTQK KAFADFMEGE IKFIPTYKYD SKTDRWDSSG KCRVPAWCDR 501 550 ENSP00000360154/1-901 ILWRGTNVNQ LNYRSHMELK TSDHKPVSAL FHIGVKVVDE RRYRKVFEDS ENSBTAP00000024296/1-784 ILWRGINVNQ LHYRSHMELK TSDHKPVSAL FCIGVKVVDE RRYRKVFEDI bmy_20501T0/1-666 ILWRGINVNQ LHYRSHMELK TSDHKPVSAL FHIGVKVVDE RRYRKVFEDI BACU008848/1-813 ILWRGINVNQ LHYRSHMELK TSDHKPVSAL FHIGVKVVDE RRYRKVFEDI ENSTTRP00000005835/1-901 ILWRGINVNQ LHYRSHMELK TSDHKPVSAL FHIGVKVVDE RRYRKVFEDI 551 600 ENSP00000360154/1-901 VRIMDRMEND FLPSLELSRR EFVFENVKFR QLQKEKFQIS NNGQVPCHFS ENSBTAP00000024296/1-784 VRIMDRMEND FLPSLELSRR EFVFENVKFR QLQKEKFQIS NNGQVPCHFS bmy_20501T0/1-666 VRIMDRMEND FLPSLELSRR EFVFENVKFR QLQKEKFQIS NNGQVPCHFS BACU008848/1-813 VRIMDRMEND FLPSLELSRR EFVFENVKFR QLQKEKFQIS NNGQVPCHFS ENSTTRP00000005835/1-901 VRIMDRMEND FLPSLELSRR EFVFENVKFR QLQKEKFQIS NNGQVPCHFS 601 650 ENSP00000360154/1-901 FIPKLNDSQY CKPWLRAEPF EGYLEPNETV DISLDVYVSK DSVTILNSGE ENSBTAP00000024296/1-784 FIPKLNDSQY CKPWLRAEPC EGYLEPNETV DISLDVYVSK DSVTILNSGE bmy_20501T0/1-666 FIPKLNDSQY CKPWLRAEPC EGYLEPNETV DISLDVYVSK DSVTILNSGE BACU008848/1-813 FIPKLNDSQY CKPWLRAEPC EGYLEPNETV DISLDVYVSK DSVTILNSGE ENSTTRP00000005835/1-901 FIPKLNDSQY CKPWLRAEPC EGYLEPNETV DISLDVYVSK DSVTILNSGE 651 700 ENSP00000360154/1-901 DKIEDILVLH LDRGKDYFLT ISGNYLPSCF GTSLEALCRM KRPIREVPVT ENSBTAP00000024296/1-784 DKIEDILVLH LDRGKDYFLT ISGNYLPSCF GTSLEALCRM KRPIREVPVT bmy_20501T0/1-666 DKIEDILVLH LDRGKDYFLT ISGNYFPSCF GTSLEALCRM KRPIREVPVT BACU008848/1-813 DKIEDILVLH LDRGKDYFLT ISGNYFPSCF GTSLEALCRM KRPIREVPVT ENSTTRP00000005835/1-901 DKIEDILVLH LDRGKDYFLT ISGNYFPSCF GTSLEALCRM KRPIREVPVT 701 750 ENSP00000360154/1-901 KLIDLEEDSF LEKEKSLLQM VPLDEGASER PLQVPKEIWL LVDHLFKYAC ENSBTAP00000024296/1-784 KLIDL----- ---EKSLLQM VPLDEGASER PLKVPKEIWL LVDHLFRYAC bmy_20501T0/1-666 KLID------ ---------- ---------- ---------- LVRGILRHAS BACU008848/1-813 KLIDLEEDSF LEKEKSLLQM VPLDEGASEK PLKVPKEILL LVDHLFRHAC ENSTTRP00000005835/1-901 KLIDLEEDSF LEKEKSLLQM VPLDEGASEK PLKVPKEIWL LVDHLFRHAC 751 800 ENSP00000360154/1-901 HQEDLFQTPG MQEELQQIID CLDTSIPETI PGSNHSVAEA LLIFLEALPE ENSBTAP00000024296/1-784 HQEDLFQTPG MQEELQQIID CLDTSIPK-- ---------- ---------- bmy_20501T0/1-666 PLD------- ---------- ---------- ---------- ---------- BACU008848/1-813 HQ-------- ---------- ---------- ---------- ---------- ENSTTRP00000005835/1-901 HQEDLFQTPG MQEELQQIID CLDTSIPKTI PGSNHSVAEA LLIFLEAVPE 801 850 ENSP00000360154/1-901 PVICYELYQR CLDSAYDPRI CRQVISQLPR CHRNVFRYLM AFLRELLKFS ENSBTAP00000024296/1-784 ---------- ---------- ---------- ---------- ---------- bmy_20501T0/1-666 ---------- ---------- ---------- ---------- ---------- BACU008848/1-813 ---------- ---------- ---VISQLPG CHRNVFRYLM AFLRELLKFS ENSTTRP00000005835/1-901 PVICYELYQR CLDSAQDPRI CRQVISQLPG CHRNVFRYLM AFLRELLKFT 851 900 ENSP00000360154/1-901 EYNSVNANMI ATLFTSLLLR PPPNLMARQT PSDRQRAIQF LLGFLLGSEE ENSBTAP00000024296/1-784 ---------- -TILTTQWLR HCSFS----- ---------- ---------- bmy_20501T0/1-666 ---------- -RIFTALN-- ---------- ---------- ---------- BACU008848/1-813 EYNNVSANMI ATLFTSLLLR PPPNLMARQT PSDRQRATQF LLSFLLGSDE ENSTTRP00000005835/1-901 EYNNVSANMI ATLFTSLLLR PPPNLMARQT PSDRQRATQF LLSFLLGSDE 901 950 ENSP00000360154/1-901 D ENSBTAP00000024296/1-784 - bmy_20501T0/1-666 - BACU008848/1-813 D ENSTTRP00000005835/1-901 D