KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:22:51 2014  Check: 00 ..

 Name: ENSTTRP00000014251/1-173  Len:    256  Check:  9277  Weight:  1.00
 Name: bmy_01980T0/1-256         Len:    256  Check:  9601  Weight:  1.00
 Name: ENSP00000228872/1-198     Len:    256  Check:  6631  Weight:  1.00
 Name: ENSBTAP00000024297/1-198  Len:    256  Check:  3406  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000014251/1-173  ---------- ---------- ----KPSACR NL-GP-NHEE -SRD--EHCR 
bmy_01980T0/1-256         MSNVRVSNGS PSLERMDARQ AEYPKPSACR NLFGPVNHEE LTRDLEKHCR 
ENSP00000228872/1-198     MSNVRVSNGS PSLERMDARQ AEHPKPSACR NLFGPVDHEE LTRDLEKHCR 
ENSBTAP00000024297/1-198  MSNVRVSNGS PSLERMDARQ AEYPKPSACR NLFGPVNHEE LTRDLEKHCR 


                          51                                                 100
ENSTTRP00000014251/1-173  DM-EASQRKW NFDFQNHKPL EGNYEWQEVE KGNLPEFYYR PPRPPKGACK 
bmy_01980T0/1-256         DMEEASQRKW NFDFQNHKPL EGKYEWQEVE KGNLPEFYYR PPRPPKGACK 
ENSP00000228872/1-198     DMEEASQRKW NFDFQNHKPL EGKYEWQEVE KGSLPEFYYR PPRPPKGACK 
ENSBTAP00000024297/1-198  DMEEASQRKW NFDFKNHKPL EGKYEWQEVE KGSLPEFYHR PPRPPKGACK 


                          101                                                150
ENSTTRP00000014251/1-173  VPAQEGQDVS GTRQAVPLIG SQANSEDTHL VDQKTDAPDS QTGLAEQCTG 
bmy_01980T0/1-256         VPAQEGQDVS GTRQAVPLIG SQANSEDTHL VDQKTDAPDS QTGLAEQCTG 
ENSP00000228872/1-198     VPAQESQDVS GSRPAAPLIG APANSEDTHL VDPKTDPSDS QTGLAEQCAG 
ENSBTAP00000024297/1-198  VPAQEGQDAS GARPAVPLLG SQANPEDTHL VDQKTDAPDS QTGLAEQCPG 


                          151                                                200
ENSTTRP00000014251/1-173  IRKRPATDDT SLL------- ---------- ------DEAR KIIKIIHIAD 
bmy_01980T0/1-256         IRKRPATDVR SLRLCYLVIF LTESIAAPPR SPAIPLLKTK EQTEQKKMFQ 
ENSP00000228872/1-198     IRKRPATDDS STQ------- ---------- -------NKR ANRTEENVSD 
ENSBTAP00000024297/1-198  IRKRPAADDS SPQ------- ---------- -------NKR ANRTEENVSD 


                          201                                                250
ENSTTRP00000014251/1-173  STEWTSLIST EQQQPNNTKV LGTLKS---- ---------- ---------- 
bmy_01980T0/1-256         TVPRTRVQWS RRPRSPASEG VKRKVLELRV CFLVYRIHHC LMKQGRYKLK 
ENSP00000228872/1-198     GSPNAGSV-- --EQTPKKPG LRRRQT---- ---------- ---------- 
ENSBTAP00000024297/1-198  GSPNAGSV-- --EQTPKKPG LRRRQT---- ---------- ---------- 


                          251                                                300
ENSTTRP00000014251/1-173  ------ 
bmy_01980T0/1-256         ILNTYR 
ENSP00000228872/1-198     ------ 
ENSBTAP00000024297/1-198  ------