KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:51 2014 Check: 00 .. Name: ENSP00000379133/1-242 Len: 365 Check: 929 Weight: 1.00 Name: ENSBTAP00000024300/1-242 Len: 365 Check: 1252 Weight: 1.00 Name: ENSTTRP00000001013/1-242 Len: 365 Check: 365 Weight: 1.00 Name: bmy_16662T0/1-353 Len: 365 Check: 97 Weight: 1.00 Name: BACU018436/1-224 Len: 365 Check: 9858 Weight: 1.00 // 1 50 ENSP00000379133/1-242 MSGCDAREGD CCSRRCGAQD KEHPRYLIPE LCKQFYHLGW VTGTGGGISL ENSBTAP00000024300/1-242 MSGSHAPEGD CCLRQCRAQD KEHPRYLIPE LCKQFYHLGW VTGTGGGISL ENSTTRP00000001013/1-242 MSSCHAPEGD CCSLQCRAQD KEHPKYLIPE LCKQFYHLGW VTGTGGGISL bmy_16662T0/1-353 MSGCHAPEGD CCSLQCRAQD KEHPKYLIPE LCKQFYHLGW VTGTGGGISL BACU018436/1-224 ---------- --------KD KEHPKYLIPE LCKQFYHLGW VTGTGGGISL 51 100 ENSP00000379133/1-242 KHGDEIYIAP SGVQKERIQP EDMFVCDINE KDISGPSPSK KLKKSQCTPL ENSBTAP00000024300/1-242 KHGNEIYIAP SGVQKERIQP EDMFVCDINE KDISGPPPSK NLKKSQCTPL ENSTTRP00000001013/1-242 KHGNEIYIAP SGVQKERIQP EDMFVCDINE KDISGPPPYK NLKKSQCTPL bmy_16662T0/1-353 KHGNEIYIAP SGVQKERIQ- ---------- -DISGPPPYK NLKRSQCTPL BACU018436/1-224 KHGNEIYIAP SGVQKERIQP EDMFVCDINE QDISGPPPYK NLKKSQCTPL 101 150 ENSP00000379133/1-242 FMNAYTMRGA GAVIHTHSKA AVMATLLFPG REFKITHQEM IKGIKKCTSG ENSBTAP00000024300/1-242 FMNAYTMREA GAVIHTHSKA AVMATLVFPG KEFKITHQEM IKGIKKCTSG ENSTTRP00000001013/1-242 FMNAYIMRGA GAVIHTHSKA AVMATLLFPG REFKITHQEM IKGIKKCISG bmy_16662T0/1-353 FMNAYTMRGA GAVIHTHSKA AVMATLLFPG REFKITHQEM IKGIKKCTSG BACU018436/1-224 FMNAYTMRGA GAVIHTHSKA AVMATLLFPG REFKITHQEM IKGIKKCTSG 151 200 ENSP00000379133/1-242 GYYRYDDMLV VPIIENTPEE KDLKDRMAHA MNEYPDSCAV LVRRHGVYVW ENSBTAP00000024300/1-242 GYYRYDDMLV VPIIENTPEE KDLKERMARA VNDYPDSCAV LVRRHGVYVW ENSTTRP00000001013/1-242 GYYRYDDMLV VPIIENAPEE KDLEERMARA MNDYPDSCAV LVRRHGVYVW bmy_16662T0/1-353 GYYRYDDMLV VPIIENTPEE KDLKERMAXA MNDYPDSCAV LVRRHGVYVW BACU018436/1-224 GYYRYDDMLV VPIIENTPEE KDLKERMARA MNDYPDSCAI LVRRHGVYVW 201 250 ENSP00000379133/1-242 GETWEKAKTM CECYDYLFDI AVSMKKVGLD PSQLPVGENG IV-------- ENSBTAP00000024300/1-242 GETWEKAKTM CECYDYLFDV AVSMKQAGLD PAQLPAGENG IV-------- ENSTTRP00000001013/1-242 GETWEKAKSM CECYDYLFDV AVSMKKVGLD PTQLPVGENG IV-------- bmy_16662T0/1-353 GETWEKAKSM CECYDYLFDV AVSMKKVGLD PTQLPVGENG ILSFVRSNSK BACU018436/1-224 GETWEKAKSM CECYDYLFDV AVSMKKVGLD PTQLPVGENG IV-------- 251 300 ENSP00000379133/1-242 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024300/1-242 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001013/1-242 ---------- ---------- ---------- ---------- ---------- bmy_16662T0/1-353 YYSSPENVPS NQNESKIEFL LPVISLPSQE FLLKPCCVII LKIFLLHIEF BACU018436/1-224 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000379133/1-242 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024300/1-242 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001013/1-242 ---------- ---------- ---------- ---------- ---------- bmy_16662T0/1-353 TKFFFRGFEW HLKDKRVLFC SPGIHYSWLS HYLTRALRIT DSSREDEIND BACU018436/1-224 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000379133/1-242 ---------- ----- ENSBTAP00000024300/1-242 ---------- ----- ENSTTRP00000001013/1-242 ---------- ----- bmy_16662T0/1-353 ELLSCPLVHI RVKAQ BACU018436/1-224 ---------- -----