KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:22:53 2014 Check: 00 ..
Name: bmy_21941T0/1-386 Len: 449 Check: 8845 Weight: 1.00
Name: ENSP00000464932/1-449 Len: 449 Check: 2747 Weight: 1.00
Name: ENSBTAP00000024309/1-449 Len: 449 Check: 3418 Weight: 1.00
Name: BACU011551/1-310 Len: 449 Check: 4312 Weight: 1.00
Name: ENSTTRP00000001614/1-449 Len: 449 Check: 3314 Weight: 1.00
//
1 50
bmy_21941T0/1-386 MSPESKKLFN IIILGIAFMF MFTAFQTCGN VA-------- ---YLESDFL
ENSP00000464932/1-449 MSPESKKLFN IIILGVAFMF MFTAFQTCGN VAQTVIRSLN RTDFHGSGYT
ENSBTAP00000024309/1-449 MSPESKKLFN IIILGIAFMF IFTAFQTCGN VAQTVIRSLN STDFHGSGYT
BACU011551/1-310 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001614/1-449 MSPESKKLFN IIILGIAFMF MFTAFQTCGN VAQTVIRSLN STDFHGSGYT
51 100
bmy_21941T0/1-386 GMAIIYGVFS ASNLITPSVV AIVGPQLSMF ASGLFYSMYI AVFIQPFPWS
ENSP00000464932/1-449 SMAIIYGVFS ASNLITPSVV AIVGPQLSMF ASGLFYSMYI AVFIQPFPWS
ENSBTAP00000024309/1-449 SMAIIYGVFS ASNLITPSVV AIVGPQLSMF ASGLFYSMYI AVFIQPFPWS
BACU011551/1-310 ---------- ---------- ---------- -------MYI AVFIQPFTWS
ENSTTRP00000001614/1-449 SMAIIYGVFS ASNLITPSVV AIVGPQLSMF ASGLFYSMYI AVFIQPFPWS
101 150
bmy_21941T0/1-386 FYTASVFIGI AAAVLWTAQG NCLTINSDEH TIGRNSGIFW ALLQSSLFFG
ENSP00000464932/1-449 FYTASVFIGI AAAVLWTAQG NCLTINSDEH SIGRNSGIFW ALLQSSLFFG
ENSBTAP00000024309/1-449 FYTASVFIGI AAAVLWTAQG NCLTINSDEH TIGRNSGIFW ALLQFSLFFG
BACU011551/1-310 FYTASVFIGI AAA------- ---------- ---------- ----------
ENSTTRP00000001614/1-449 FYTASVFIGI AAAVLWTAQG NCLTINSDEH TIGRNSGIFW ALLQSSLFFG
151 200
bmy_21941T0/1-386 NLYIYFAWQG KTQISESDRR TVFIALTVIS LVGTVLFFLI RKPDSENVLG
ENSP00000464932/1-449 NLYIYFAWQG KTQISESDRR TVFIALTVIS LVGTVLFFLI RKPDSENVLG
ENSBTAP00000024309/1-449 NLYIYFAWQG KTQISESDRR TVFIALTVIS LVGTVLFFLI RKPDSENVLG
BACU011551/1-310 ---------- -----ESDRR TVFIALTVIS LVGTVLFFLI RKPDSENVLG
ENSTTRP00000001614/1-449 NLYIYFAWQG KTHISESDRR TVFIALTVIS LVGTVLFFLI RKPDSENVLG
201 250
bmy_21941T0/1-386 EDESSDDQDL DVNESAQNNM TKAVDAF--- ---------- ---------S
ENSP00000464932/1-449 EDESSDDQDM EVNESAQNNL TKAVDAFKKS FKLCVTKEML LLSITTAYTG
ENSBTAP00000024309/1-449 EDESSDDQDL DINESPQSNM TKAVDAFKKS LKLCVTKEML LLSITTAYTG
BACU011551/1-310 EDESSDDQDL DVNESAQNNM TKAVDAFKRS LKLCVTKEML LLSVTTAYTG
ENSTTRP00000001614/1-449 EDESSDDQDL DVNESAQNNM TKAVDAFKKS LKLCVTKEML LLSITTAYTG
251 300
bmy_21941T0/1-386 LELTFFSGVY GTCIGAINKF GTEEKSLIGL SGIFIGIGEI --------LD
ENSP00000464932/1-449 LELTFFSGVY GTCIGATNKF GAEEKSLIGL SGIFIGIGEI LGGSLFGLLS
ENSBTAP00000024309/1-449 LELTFFSGVY GTCIGAINKF GTEEKSLIGL SGIFIGIGEI LGGSLFGLLS
BACU011551/1-310 LELTFFSGVY GTCIGAINKF GTEEKSLIGL SGIFIGIGEI LGGSLFGLLS
ENSTTRP00000001614/1-449 LELTFFSGVY GTCIGAINKF GTEEKSLIGL SGIFIGIGEI LGGSLFGLLS
301 350
bmy_21941T0/1-386 PQSKSSSAP- ---------- --HTVFAS-- ------PIVS RPEFAGLR-S
ENSP00000464932/1-449 KNNRFGRNPV VLLGILVHFI AFYLIFLNMP GDAPIAPVKG TDSSAYIKSS
ENSBTAP00000024309/1-449 KNNRFGRNPV VLLGILVHFI AFYLIFLNMP GDAPIAPVEG TDSSAYIKPS
BACU011551/1-310 KNNRFGRNPV VLLGILVHFI AFYLIFLNMP GDAPIAPVEG TDSSAYIKPS
ENSTTRP00000001614/1-449 KNNRFGRNPV VLLGILVHFI AFYLIFLNMP GDAPIAPVEG TDSSAYIKPS
351 400
bmy_21941T0/1-386 KEVAIFCSFL LGLGDSCFNT QLLSILGFLY SEDSAPAFAV FKFVQSICAA
ENSP00000464932/1-449 KEVAILCSFL LGLGDSCFNT QLLSILGFLY SEDSAPAFAI FKFVQSICAA
ENSBTAP00000024309/1-449 KEIAIFCSFL LGLGDSCFNT QLLSILGFLY SEDSAPAFAV FKFVQSICAA
BACU011551/1-310 KEVAIFCSFL LGLGDSCFNT QLLSILGFLY SEDSAPAFAV FKFVQSICAA
ENSTTRP00000001614/1-449 KEVAIFCSFL LGLGDSCFNT QLLSILGFLY SEDSAPAFAV FKFVQSICAA
401 450
bmy_21941T0/1-386 VAFFYSNYLL LHWQLLVMVI FGFFGTVSFF TVEWEAAAIV ARGSDYRSI
ENSP00000464932/1-449 VAFFYSNYLL LHWQLLVMVI FGFFGTISFF TVEWEAAAFV ARGSDYRSI
ENSBTAP00000024309/1-449 VAFFYSNYLL LHWQLLVMVI FGFFGTVSFF TVEWEAAAIV ARGSDYRSI
BACU011551/1-310 VAFFYSNYLL LHWQLLVMVM FGFFGTVSFF TVEWEAAAIV ARGSDYRSI
ENSTTRP00000001614/1-449 VAFFYSNYLL LHWQLLVMVM FGFFGTVSFF TVEWEAAAIV ARGSDYRSI