KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:53 2014 Check: 00 .. Name: bmy_01080T0/1-436 Len: 550 Check: 2875 Weight: 1.00 Name: ENSBTAP00000024312/1-366 Len: 550 Check: 4287 Weight: 1.00 Name: ENSP00000296098/1-400 Len: 550 Check: 1630 Weight: 1.00 Name: ENSTTRP00000011873/1-359 Len: 550 Check: 1240 Weight: 1.00 Name: BACU014552/1-442 Len: 550 Check: 5723 Weight: 1.00 // 1 50 bmy_01080T0/1-436 ---------- --MTH----- --------CA FLSRSPSP-- ---------- ENSBTAP00000024312/1-366 MNFTVGFKPL LGDAHSMDNL EKQLICPICL EMFSKPVVIL PCQHNLCRKC ENSP00000296098/1-400 MNFTVGFKPL LGDAHSMDNL EKQLICPICL EMFSKPVVIL PCQHNLCRKC ENSTTRP00000011873/1-359 MNFTVGFKPL LGDAHSMDSL EKQLICPICL EMFSKPVVIL PCQHNLCRKC BACU014552/1-442 MNFTVGFKPL LGDAHSMDSL EKQLICPICL EMFSKPVVIL PCQHNLCRKC 51 100 bmy_01080T0/1-436 -----QASNP LWQSRGSTTV SSGGRFRCPS CRHEVVLDRH GVYGLQRNLL ENSBTAP00000024312/1-366 ANDVFQASNP LWQSRSSTTV SSGGRFRCPS CRHEVVLDRH GVYGLQRNLL ENSP00000296098/1-400 ANDVFQASNP LWQSRGSTTV SSGGRFRCPS CRHEVVLDRH GVYGLQRNLL ENSTTRP00000011873/1-359 ANDVFQASNP LWQSRGSTTV SSGGRFRCPS CRHEVVLDRH GVYGLQRNLL BACU014552/1-442 ANDVFQASNP LWQSRGSTTV SSGGRFRCPS CRHEVVLDRH GVYGLQRNLL 101 150 bmy_01080T0/1-436 VENIIDIYKQ ESSRPLHSKA EQHLMCEEHE DEKINIYCLS CEVPTCSLCK ENSBTAP00000024312/1-366 VENIIDIYKQ ESSRPLHSKA EQHLMCEEHE DEKINIYCLS CEVPTCSLCK ENSP00000296098/1-400 VENIIDIYKQ ESSRPLHSKA EQHLMCEEHE EEKINIYCLS CEVPTCSLCK ENSTTRP00000011873/1-359 VENIIDIYKQ ESSRPLNSKA EQHLMCEEHE DEKINIYCLS CEVPTCSLCK BACU014552/1-442 VENIIDIYKQ ESSRPLHSKA EQHLMCEEHE DEKINIYCLS CEVPTCSLCK 151 200 bmy_01080T0/1-436 VFGAHKDCEV APLPTIYKRQ K--------- ---------- ---------- ENSBTAP00000024312/1-366 VFGAHKDCEV APLPTIYKRQ K--------- ---------- ---------- ENSP00000296098/1-400 VFGAHKDCEV APLPTIYKRQ KKQDLTLLPR LECSGTNTTY CSLDLPSSSD ENSTTRP00000011873/1-359 VFGAHKDCEV APLPTIYKRQ K--------- ---------- ---------- BACU014552/1-442 VFGAHKDCEV APLPTIYKRQ K--------- ---------- ---------- 201 250 bmy_01080T0/1-436 ---------- ---SELSDGI SMLVAGNDRV QAVITQMEEV CQTIE----- ENSBTAP00000024312/1-366 ---------- ---SELSDGI AMLVAGNDRV QAVITQMEEV CQTIEENSRR ENSP00000296098/1-400 PPILASQNTK IIDSELSDGI AMLVAGNDRV QAVITQMEEV CQTIEDNSRR ENSTTRP00000011873/1-359 ---------- ---SELSDGI SMLVAGNDRV QAVITQMEEV CQTIEDNSRR BACU014552/1-442 ---------- ---SELSDGI SMLVAGNDRV QAVITQMEEV CQTIEDNSRR 251 300 bmy_01080T0/1-436 -------RFE ALCAVLEERK GELLQALARK QEEKLQRVRG LIRQYGDHLE ENSBTAP00000024312/1-366 QKQLLNQRFE GLCAVLEERK GELLQALARE QEEKLQRVRG LIRQYGDHLE ENSP00000296098/1-400 QKQLLNQRFE SLCAVLEERK GELLQALARE QEEKLQRVRG LIRQYGDHLE ENSTTRP00000011873/1-359 QKQLLNHRFE ALCAVLEERK GELLHALALK QEENLQRV-G LIRQY-NHLE BACU014552/1-442 QKQLLNQRFE ALCAVLEERK GELLQALARK QEEKLQRVRA LIRQYGDHLE 301 350 bmy_01080T0/1-436 ASSKL----- ---------- ---QAKELIN KVGTMSKVEL AGRPEPGYES ENSBTAP00000024312/1-366 ASSKLVESAI QSMEEPQMAL YLQQAKELIN KVGTMSKVEL AGRPEPGYER ENSP00000296098/1-400 ASSKLVESAI QSMEEPQMAL YLQQAKELIN KVGAMSKVEL AGRPEPGYES ENSTTRP00000011873/1-359 ASSKLVESAI QSMEEPQMAL YLQQAKELIN KVGTMSKVEL GGRPEPGYES BACU014552/1-442 ASSKLVESAI QSMEEPQMAL YLQQAKELIN KVGTMSKVEL AGRPEPGYES 351 400 bmy_01080T0/1-436 MEQFTVSVEH VAEMLRTIDF QPGASGEEED EEVALDGEEG SAGPEEERLE ENSBTAP00000024312/1-366 MDQFTVSVEH VAEMLRTIDF QPGTSGEEED EEVAVEGEEG NAGPEEERTD ENSP00000296098/1-400 MEQFTVRVEH VAEMLRTIDF QPGASGEE-- EEVAPDGEEG SAGPEEERPD ENSTTRP00000011873/1-359 MEQFTVSVEH VAEMLRTIDF QPGASGEEED EEVALDGEEG SAGPEEERLE BACU014552/1-442 MEQFTVSVEH VAEMLRTIDF QPGASGEEED EEVALDGEEG SAGPXXERLE 401 450 bmy_01080T0/1-436 GPEGECGHWR GLAGTAPPPA ISLSAASGIA WGPYSQPQPG GVRPLARVLK ENSBTAP00000024312/1-366 GRESTGQH-- ---------- ---------- ---------- ---------- ENSP00000296098/1-400 GP-------- ---------- ---------- ---------- ---------- ENSTTRP00000011873/1-359 ASE------- ---------- ---------- ---------- ---------- BACU014552/1-442 GPEAP----- ---------- ---------- ---------- ---------- 451 500 bmy_01080T0/1-436 YNFLSHHPFL LGFGSPSWVG KWRRNPPGWG KGVIWASELP CLFGAPAHRA ENSBTAP00000024312/1-366 ---------- ---------- ---------- ---------- ---------- ENSP00000296098/1-400 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011873/1-359 ---------- ---------- ---------- ---------- ---------- BACU014552/1-442 ---FTAHSLS LGFCDDR--- ---------- -----ITIHP NLLLIWDHFG 501 550 bmy_01080T0/1-436 FFPVDRPALT RPCWGGCAPA AWRSGDEGPE QGPPATQLGA PPRGRGSIKG ENSBTAP00000024312/1-366 ---------- ---------- ---------- ---------- ---------- ENSP00000296098/1-400 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011873/1-359 ---------- ---------- ---------- ---------- ---------- BACU014552/1-442 GRSGMNPYWA PPRYQARIRK PSAKRVGGGA AAPGLEFLGD LGRWGPQDPG