KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:55 2014 Check: 00 .. Name: ENSP00000363891/1-1119 Len: 1173 Check: 3044 Weight: 1.00 Name: ENSTTRP00000016380/1-950 Len: 1173 Check: 5465 Weight: 1.00 Name: ENSBTAP00000024319/1-1084 Len: 1173 Check: 5781 Weight: 1.00 Name: bmy_02270T0/1-1128 Len: 1173 Check: 3036 Weight: 1.00 Name: BACU011609/1-1083 Len: 1173 Check: 5861 Weight: 1.00 // 1 50 ENSP00000363891/1-1119 MTAAAASNWG LITNIVNSIV GVSVLTMPFC FKQCGIVLGA LLLVFCSWMT ENSTTRP00000016380/1-950 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024319/1-1084 MTAAAASNWG LITNIVNSIV GVSVLTMPFC FKQCGIVLGA LLLAFCSWMT bmy_02270T0/1-1128 MTAAAASNWG LITNIVNSIV GVSVLTMPFC FKQCGIVLGA LLLVFCSWMT BACU011609/1-1083 MTAAAASNWG LITNIVNSIV GVSVLTMPFC FKQCGIVLGA LLLVFCSWMT 51 100 ENSP00000363891/1-1119 HQSCMFLVKS ASLSKRRTYA GLAFHAYGKA GKMLVETSMI GLMLGTCIAF ENSTTRP00000016380/1-950 ---------- ---------- ---LHAYGKA GKMLVETXXX XXXXXXXXXX ENSBTAP00000024319/1-1084 HQSCMFLVKA ASLSKRRTYA GLALHAYGKA GKMLVETSMI GLMLGTCIAF bmy_02270T0/1-1128 HQSCMFLVKA ASLSKRRTYA GLALHXYGKA GKMLVETSMI GLMLGTCIAF BACU011609/1-1083 HQSCMFLVKA ASLSKRRTYA GLALHAYGKA GKMLVETSMI GLMLGTCIAF 101 150 ENSP00000363891/1-1119 YVVIGDLGSN FFARLFGFQV GGTFRMFLLF AVSLCIVLPL SLQRNMMASI ENSTTRP00000016380/1-950 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000024319/1-1084 YVVIGDLGSN FFARLFGFQV TGTFRMLLLF AVSLCIVLPL SLQRNMMASI bmy_02270T0/1-1128 YVVIGDLGSN FFARLFGFQV TGTFRXLLLF AVSLCIVLPL SLQRNMMASI BACU011609/1-1083 YVVIGDLGSN FFARLFGFQV TGTFRMLLLF AVSLCIVLPL SLQRNMMASI 151 200 ENSP00000363891/1-1119 QSFSAMALLF YTVFMFVIVL SSLKHGLFSG QWLRRVSYVR WEGVFRCIPI ENSTTRP00000016380/1-950 XXXXXXXXXX XXXXXXXIML SSLKHGLFGG QWLRRVSYIR WEGVFRCIPI ENSBTAP00000024319/1-1084 QSFSAMALIF YTVFMFVIVL SSFKHGLFGG QWLQRVSYIR WEGVFRCIPI bmy_02270T0/1-1128 QSFSAMALIF YTVFMFVIML SSLKHGLFGG QWLRRVSYIR WEGVFRCIPI BACU011609/1-1083 QSFSAMALIF YTVFMFVIVL SSLKHGLFGG QWLRRVSYIR WEGVFRCIPI 201 250 ENSP00000363891/1-1119 FGMSFACQSQ VLPTYDSLDE PSVKTMSSIF ASSLNVVTTF YVMVGFFGYV ENSTTRP00000016380/1-950 FGMSFACQSQ VLPTYDSLDE PSVKAMSSIF ASSLNVVTTF YVMVGFFGYV ENSBTAP00000024319/1-1084 FGMSFACQSQ VLPTYDSLDE PSVKTMSSIF ASSLNVVTTF YVMVGFFGYV bmy_02270T0/1-1128 FGMSFACQSQ VLPTYDSLDE PSVKAMSSIF ASSLNVVTTF YVMVGFFGYV BACU011609/1-1083 FGMSFACQSQ VLPTYDSLDE PSVKAMSSIF ASSLNVVTTF YVMVGFFGYV 251 300 ENSP00000363891/1-1119 SFTEATAGNV LMHFPSNLVT EMLRVGFMMS VAVGFPMMIL PCRQALSTLL ENSTTRP00000016380/1-950 SFTEATAGNV LMHFPSNLVT EMIRVGFMMS VAVGFPMMIL PCRQALNTLL ENSBTAP00000024319/1-1084 SFTEATEGNV LMHFPSNLVT EMIRVGFMMS VAVGFPMMIL PCRQALNTLL bmy_02270T0/1-1128 SFTEATAGNV LMHFPSNLVT EMIRVGFMMS VAVGFPMMIL PCRQALNTLL BACU011609/1-1083 SFTEATAGNV LMHFPSNLVT EMIRVGFMMS VAVGFPMMIL PCRQALNTLL 301 350 ENSP00000363891/1-1119 CEQQQKDGTF AAGGYMPPLR FKALTLSVVF GTMVGGILIP NVETILGLTG ENSTTRP00000016380/1-950 FEQQQKDGTF AAGGYMPPLR FKALTLSVVF GTMVGGIMIP NVETILGLTG ENSBTAP00000024319/1-1084 FEQQQKDGTF TAGGYMPPLR FKALTLSVVF GTMVGGMMIP NVETILGLTG bmy_02270T0/1-1128 FEQQQKDGTF AAGGYMPPLR FKALTLSVVF GTMVGGIMIP NVETILGLTG BACU011609/1-1083 FEQQQKDGTF AAGGYMPPLR FKALTLSVVF GTMVGGIMIP NVETILGLTG 351 400 ENSP00000363891/1-1119 ATMGSLICFI CPALIYKKIH KNALSSQVVL WVGLGVLVVS TVTTLSVSEE ENSTTRP00000016380/1-950 ATMGSLICFI CPALIYKKIH KNSLSSQVVL WVGLGILVVS THTTLSVSQE ENSBTAP00000024319/1-1084 ATMGSLICFV CPTLIYKKIH KNSLSSQVVL WVGLGILVIS THTTLSVSQE bmy_02270T0/1-1128 ATMGSLICFI CPALIYKKIH KNSLSSQVVL WVGLGILVVS THTTLSVSQE BACU011609/1-1083 ATMGSLICFI CPALIYKKIH KNSLSSQVVL WVGLGILVVS THTTLSVSQE 401 450 ENSP00000363891/1-1119 VPEDLAEEAP GGRLGEAEGL MKVEAARLSA QDPVVAVAED GREKPKLPKE ENSTTRP00000016380/1-950 APVDLAKEAP GSRLGEAEGA MKAEAAQLPG QNPIVDVAED SRDKPKLPNE ENSBTAP00000024319/1-1084 TPMDLAKEAE GGRLEEAKGA VKVEAAQLPG QNPIVDVAED GRDKPKLPNE bmy_02270T0/1-1128 APVDLAEEAP GSRLGEAEGA MKAEAAQLPG QNPIVDVAED SRDKPNLPNE BACU011609/1-1083 PPMDLAEEAP GSRLGEAEGA MKAEAAQLPG QNPIVDVAED SRDKPKLPNE 451 500 ENSP00000363891/1-1119 REELEQAQIK GPVDVPGRED GKEAPEEAQL DRPGQGIAVP VGEAHRHEPP ENSTTRP00000016380/1-950 KDEMEQAQIK GPVNVPPRED AKEKQEEAQL DRPGQXXXXX XXXXXXXXXX ENSBTAP00000024319/1-1084 KDEMEQAQIK GPVNVPPRED AKEKQEAAQL DRPGQGVAVP LGEAHRHEPP bmy_02270T0/1-1128 KDEMEQAQIK GPVNVPPRED AKEKQEEAQL DRPGQGVAVP LGEAHRHEPP BACU011609/1-1083 KDEMEQAQIK GPVNVPPRED AKEKQEEAQL ERPGQGVAVP LGEAHRHEPP 501 550 ENSP00000363891/1-1119 VPHDKVVVDE GQDREVPEEN KPPSRHAGGK APGVQGQMAP PLPDSEREKQ ENSTTRP00000016380/1-950 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXGKGQMVL PLLDSERE-- ENSBTAP00000024319/1-1084 VPHDEVIVDE GQDQEGLEKE R-PSKHMDER ALGGKGQMVP PLLDSGRE-- bmy_02270T0/1-1128 VPHDKVVVDE GQDPEGLEKE H-PSKRVDER ALGGKGQMVP PLLDSERE-- BACU011609/1-1083 VPHDKVVVDE GQDPEGLEKE H-PSKRVDER ALGGKGQMVP PLLDSERE-- 551 600 ENSP00000363891/1-1119 EPEQGEVGKR PGQAQALEEA GDLPEDPQKV PEADGQPAVQ PAKEDLGPGD ENSTTRP00000016380/1-950 ---------R PRQEQALEAA GGLPKDPQKV PEENGQPAVE PLKEDLGLVD ENSBTAP00000024319/1-1084 ---------R PRQDQALEAA GGLPKDSQKV PEENGQPAIE PVKEDLGQGD bmy_02270T0/1-1128 ---------R PRQDQALEAA GGLPKDPQKV PEENGQPAVE PLKEDLGLGD BACU011609/1-1083 ---------R PRQDQALEAV GGLPKDPQKV PEENGQPAVE PLKEDLGLGN 601 650 ENSP00000363891/1-1119 RGLHPRPQAV LSEQQNGLAV GGGEKAKGGP PPGNAAGDTG QPAEDSDHGG ENSTTRP00000016380/1-950 RGAHPGPQAV LPEGQDVLVA GAGAIADGAL LPGHAVGAMG KLVEKNEHGG ENSBTAP00000024319/1-1084 RGVHQGPQAV LSEGQDVPVA GAGARADGAL LPGHAAGAMG KPEEKKEPGG bmy_02270T0/1-1128 RGAHPGPQAV LPEGQDVLVA GAGARADGAL LPGHAVGAMG KLVEKNEHGG BACU011609/1-1083 RGAHPGPQAV LPEGQDVLVA GAGARADGAL LPGHAVGAMG KLVEKNEHGG 651 700 ENSP00000363891/1-1119 KPPLPAEKPA PGPGLPPEPR EQRDVERAG- ---GNQAASQ LE-EAGRAEM ENSTTRP00000016380/1-950 KAPLPEEKPG PRAVLQAEPR EQRTLEGAG- ---GDHAGSK LE-EAGRAEM ENSBTAP00000024319/1-1084 KAPLLEEKPG PGAAPQAEPR EQRTEEGQG- ---GEHAGSK LEAEAGRAEM bmy_02270T0/1-1128 KAPLSEEKPG PGAVPQAEPR EQRTLEGQGG DHAGDHAGSK LE-EAGRAEM BACU011609/1-1083 KAPL-SEKPG PGAVPQAEPR EQRTLEGQGG DHAGDHAGSK LE-EAGRAEM 701 750 ENSP00000363891/1-1119 LDHAVLLQVI KEQQVQQKRL LDQQEKLLAV IEEQHKEIHQ QRQEDEEDKP ENSTTRP00000016380/1-950 LDHAVLLQVI KEQQVQQKRL LDQQEKLLAV IEEQHKEIHQ QRQDGQDGED ENSBTAP00000024319/1-1084 LDHAVLLQVI KEQQVQQKRL LDQQEKLLAV IEEQHKEIHQ QRQDGQEGED bmy_02270T0/1-1128 LDHAVLLQVI KEQQVQQKRL LDQQEKLLAV IEEQHKEIHQ QRQDGQDGED BACU011609/1-1083 LDHAVLLQVI KEQQVQQKRL LDQQEKLLAV IEEQHKEIHQ QRQDGEDGKS 751 800 ENSP00000363891/1-1119 RQ-------- ---------- ---------- ---------- -----VEVHQ ENSTTRP00000016380/1-950 Q--------- ---------- ---------- ---------- -----ADVQP ENSBTAP00000024319/1-1084 VA-------- ---------- ---------- ---------- -----VDVQP bmy_02270T0/1-1128 GKSGGGGRGR GPGLQGRGQL LRLLGEEGLS LNARTPECPG VPAQLADVQP BACU011609/1-1083 R--------- ---------- ---------- ---------- -----ADVQP 801 850 ENSP00000363891/1-1119 EPGAAVPRGQ EAPEGKARET VENLPPLPLD PVLRAPGGRP APSQDLNQRS ENSTTRP00000016380/1-950 ELGVAGPRGK E-QEAHAMGM AERPPPHPL- ---------- ---------- ENSBTAP00000024319/1-1084 ELGVAAPRGK E-QEVHDAGM AERPPPQPVE VLPGAPGRPA APPQGHSQRS bmy_02270T0/1-1128 ELGVAGPRGK E-QEAHAVGM AERPPQQPLG AVPGAPGRPP APPQGHSQHS BACU011609/1-1083 ELGVAGPRGK E-QEAHAVGM AERPPQQPLG AVPGAPGRPP APPQGHSQHS 851 900 ENSP00000363891/1-1119 LEHSEGPVGR DPAGPPDGGP DTEPRAAQAK LRDGQKDAAP RAAGTVKELP ENSTTRP00000016380/1-950 ---------- ---------- ---------- ------GAVP EGVDAGLQ-- ENSBTAP00000024319/1-1084 VEEPEGAAGR APAAPP-GGA DPQPWAAPAE PREGRQGAVP EAEGAGVQ-- bmy_02270T0/1-1128 VEKPEGALGR APAAPP-GGA DLQPRAAQAE PREGRQGAVP EAVDAGVQ-- BACU011609/1-1083 VEKPEGALGR APAAPP-GGA DLQPRAAQAE PREGWQGAVP EAVDAGVQ-- 901 950 ENSP00000363891/1-1119 KGPEQVPVPD PAREAGGPEE RLAEEFPGQS QDVTGG-SQD RKKPGKEVAA ENSTTRP00000016380/1-950 ---ERVPVLD PARAPGSPEQ HGAGGVAWQS RNVFGGSSHE RKKSGKDEAA ENSBTAP00000024319/1-1084 ---ERLPVLE PARMPGSPEQ HGAGDVPGQS RDVFGGGAHE KKKSGKEAAA bmy_02270T0/1-1128 ---ERVPVLD PARAPGSPEQ HGAGDVPRQS RNVFGGGSHE RKKSGKEEAA BACU011609/1-1083 ---ERVPVLD PARAPGIPEQ HGAGDVPRQS RNVFGGGSHE RKKSGKEEAA 951 1000 ENSP00000363891/1-1119 TGTSILKEAN WLVAGPGAET GDPRMKPKQV SRDLGLAADL PGG----AEG ENSTTRP00000016380/1-950 AGTDA-QEAD --VLRAGAAA GGPQVKSQQA SQDRA----- PGGLSSRSGG ENSBTAP00000024319/1-1084 AGVDT-QEAD --VLGVGAAI GAPQVKSQQA SRDRA----- PGG---RSGV bmy_02270T0/1-1128 TGADA-QEAD --VLGAGAAV GAPQVKSQQA SQDRA----- PGGLSSRSGG BACU011609/1-1083 TGADA-QEAD --VLGAGAAV GAPQVKFQQA SQDRA----- PGGLSSRSGG 1001 1050 ENSP00000363891/1-1119 AAAQPQAVLR QPELRVISDG EQGGQQGHRL DHGGHLEMRK -ARGGDHVPV ENSTTRP00000016380/1-950 AAPRAQAVLH QPEQQAVSAG GQGGQQ---- --GGHEEARK -----EHVPS ENSBTAP00000024319/1-1084 AAPQAQVVLH QPEHRADPAG GQGGQQ---- --GGHMEMRK EAPGREHVPA bmy_02270T0/1-1128 AAPRAQAVLH QPEQRAVSAG GQGGQQ---- --GGHEEARK -----EHVPA BACU011609/1-1083 AAPRAQAVLH QPEQRAVSAG GQGGQQ---- --GGHEEARK -----EHVPA 1051 1100 ENSP00000363891/1-1119 SHEQPRGGED AAVQEPRQRP EPELGLKRAV PGGQRPDNAK PNRDLKLQAG ENSTTRP00000016380/1-950 --------ED AAIQEPEQRL DPELGPKPAM LGDQKPDNAK PNRDLKVQAG ENSBTAP00000024319/1-1084 PW------EN TAGQEPEQRP DPELGPKPAI PGDQKPDNAK PNRDLKVQAG bmy_02270T0/1-1128 PR------ED AAIQEPEQRP DPELGPKPAM LGDQKPDNAK PNRDLKVQAG BACU011609/1-1083 PR------ED AAIQEPEQRP DPELGPKPAM LGDQKPDNAK PNRDLKVQAG 1101 1150 ENSP00000363891/1-1119 SDLRRRRRDL GPHAEGQLAP RDGVIIGLNP LPDVQVNDLR GALDAQLRQA ENSTTRP00000016380/1-950 SDLRRRRRDV APRAEAGPAP KDRVIISFNP LPDVQVSDLR GALETQLHQA ENSBTAP00000024319/1-1084 SDLRRRRRDV APLAEAGLAP KDGVIISFNS LPEVQVNDLR SALETQLHQA bmy_02270T0/1-1128 SDLRRRRRDV APRAEAGPAP KDRVIISFNP LPDVQVNDLR SALETQLHQA BACU011609/1-1083 SDLRRRRRDV APRAEAGPAP KDGVIISFNP LPDVQVNDLR SALETQLHQA 1151 1200 ENSP00000363891/1-1119 AGGALQVVHS RQLRQAPGPP EES ENSTTRP00000016380/1-950 AGGALRVVPG QQIKQLLGAL EEP ENSBTAP00000024319/1-1084 AGGALRVVPG RQIKQLPGAL EEP bmy_02270T0/1-1128 AGGALRVVPG RQIKQLPGAL EEP BACU011609/1-1083 AGGALRVVPG RQIKQLPRAL EEP