KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:57 2014 Check: 00 .. Name: bmy_08794T0/1-1129 Len: 1575 Check: 995 Weight: 1.00 Name: BACU003012/1-837 Len: 1575 Check: 6380 Weight: 1.00 Name: ENSTTRP00000006932/1-1527 Len: 1575 Check: 7203 Weight: 1.00 Name: ENSP00000338629/1-1566 Len: 1575 Check: 3746 Weight: 1.00 Name: ENSBTAP00000024320/1-1545 Len: 1575 Check: 6775 Weight: 1.00 // 1 50 bmy_08794T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 MTADKDKDKD KEKDRDRDRD REREKRDKAR ESENSRPRRS CTLEGGAKNY ENSP00000338629/1-1566 MTADKDKDKD KEKDRDRDRD REREKRDKAR ESENSRPRRS CTLEGGAKNY ENSBTAP00000024320/1-1545 MTADKDKDKD KEKDRDRDRD REREKRDKVR ESENSRPRRS CTLEGGAKNY 51 100 bmy_08794T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU003012/1-837 ---------- ---------- ---MASWLGR RVKEGFEEKT TSGMAGALSG ENSTTRP00000006932/1-1527 AESDHSEDED ND-NGATTEE STKKTKKKPP KKKSRYERTD TGEITSYITE ENSP00000338629/1-1566 AESDHSEDED NDNNSATAEE STKKNKKKPP KKKSRYERTD TGEITSYITE ENSBTAP00000024320/1-1545 AESDHSEDED NDNNSATTEE STKKNKKKPP KKKSRYERTD TGEITSYITE 101 150 bmy_08794T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU003012/1-837 EE-------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 DDVVYRPGDC VYIESRRPNT PYFICSIQDF KLVHNSQACC RSPPPALCDP ENSP00000338629/1-1566 DDVVYRPGDC VYIESRRPNT PYFICSIQDF KLVHNSQACC RSPTPALCDP ENSBTAP00000024320/1-1545 DDVVYRPGDC VYIESRRPNT PYFICSIQDF KLVHNSQACC RSPTPALCDP 151 200 bmy_08794T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 PACSLPVAAQ PPQHLSEAGR GPVGSKRDHL LMNVKWYYRQ SEVPDSVYQH ENSP00000338629/1-1566 PACSLPVASQ PPQHLSEAGR GPVGSKRDHL LMNVKWYYRQ SEVPDSVYQH ENSBTAP00000024320/1-1545 PACSLPVASQ PPQHLSEAGR GPVGSKRDHL LMNVKWYYRQ SEVPDSVYQH 201 250 bmy_08794T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 LVQDRHNEND SGRELVITDP VIKNRELFIS DYVDTYHAAA LRGKCNISHF ENSP00000338629/1-1566 LVQDRHNEND SGRELVITDP VIKNRELFIS DYVDTYHAAA LRGKCNISHF ENSBTAP00000024320/1-1545 LVQDRHNEND SGRELVITDP VIKNRELFIS DYVDTYHAAA LRGKCNISHF 251 300 bmy_08794T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU003012/1-837 ---------- ---------- DWDRTSRRQS S--------- ---ERLMGMR ENSTTRP00000006932/1-1527 SDIFAAREFK ARVDSFFYIL GYNPETRRLN STQGEIRVGP SHQXXXXXXX ENSP00000338629/1-1566 SDIFAAREFK ARVDSFFYIL GYNPETRRLN STQGEIRVGP SHQAKLPDLQ ENSBTAP00000024320/1-1545 SDIFAAREFK ARVDSFFYIL GYNPETRRLN STQGEIRVGP SHQAKLPDLQ 301 350 bmy_08794T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU003012/1-837 PTSSRKA--- ---------- ---------- LRNSELAVVF G--------- ENSTTRP00000006932/1-1527 XXXXXXXDTV TQHEELVWMP GVNDCD-LMY LRAARSMAAF AGMCDGGSTE ENSP00000338629/1-1566 PFPSPDGDTV TQHEELVWMP GVNDCDLLMY LRAARSMAAF AGMCDGGSTE ENSBTAP00000024320/1-1545 PFPSPDGDTV TQHEELVWMP GVNDCDLLMY LRAARSMAAF AGMCDGGSTE 351 400 bmy_08794T0/1-1129 ---------- ---------- ---------- ---------- ---------- BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 DGCVAASRDD TTLNALNTLH ESGYDAGKAL QRLVKKPVPK LIEKSWTEDE ENSP00000338629/1-1566 DGCVAASRDD TTLNALNTLH ESGYDAGKAL QRLVKKPVPK LIEKCWTEDE ENSBTAP00000024320/1-1545 DGCVAASRDD TTLNALNTLH ESGYDAGKAL QRLVKKPVPK LIEKSWTEDE 401 450 bmy_08794T0/1-1129 ---------- ---------- ------MQGE LITFYYYWKK TPEAASSRAH BACU003012/1-837 ---------- ---------- --------GE LITFYYYWKK TPEAASSRAH ENSTTRP00000006932/1-1527 VKRFVKGLRQ YGKNFFRIRK ELLPSKETGE LITFYYYWKK TPEAASSRAH ENSP00000338629/1-1566 VKRFVKGLRQ YGKNFFRIRK ELLPNKETGE LITFYYYWKK TPEAASSRAH ENSBTAP00000024320/1-1545 VKRFVKGLRQ YGKNFFRIRK ELLPNKETGE LITFYYYWKK TPEAASSRAH 451 500 bmy_08794T0/1-1129 RRHRRQAVFR RIKTRTASTP VNTPSRPPSS EFLDLSSASE DDFDSEDSEQ BACU003012/1-837 RRHRRQAVFR RIKTRTASTP VNTPSRPPSS EFLDLSSASE DDFDSEDSEQ ENSTTRP00000006932/1-1527 RRHRRQAVFR RIKTRTASTP VNTPSRPPSS EFLDLSSASE DDFDSEDSEQ ENSP00000338629/1-1566 RRHRRQAVFR RIKTRTASTP VNTPSRPPSS EFLDLSSASE DDFDSEDSEQ ENSBTAP00000024320/1-1545 RRHRRQAVFR RIKTRTASTP VNTPSRPPSS EFLDLSSASE DDFDSEDSEQ 501 550 bmy_08794T0/1-1129 ELKGYACRHC FSTASKDWHH GGRENILLCT DCRIHFKKYG ELPPIEKPVD BACU003012/1-837 ELKGYACRHC FSTTSKDWHH GGRENILLCT DCRIHFKKYG ELPPIEKPVD ENSTTRP00000006932/1-1527 ELKGYACRHC FSTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000338629/1-1566 ELKGYACRHC FTTTSKDWHH GGRENILLCT DCRIHFKKYG ELPPIEKPVD ENSBTAP00000024320/1-1545 ELKGYACRHC FTTTSKDWHH GGRENILLCT DCRIHFKKYG ELPPIEKPVD 551 600 bmy_08794T0/1-1129 PPPFMFKPVK EEDDGPSGKH SMRTRRSRGS MSTLRSGRKK QPASPDGRTS BACU003012/1-837 PPPFMFKPVK EEDDGPSGKH SMRTRRSRGS MSTLRSGRKK QPASPDGRTS ENSTTRP00000006932/1-1527 XXXXXXXXXK EEDDGPSGKH SM-TRRSRGS MSTLRSGRKK QPASPDGRAS ENSP00000338629/1-1566 PPPFMFKPVK EEDDGLSGKH SMRTRRSRGS MSTLRSGRKK QPASPDGRTS ENSBTAP00000024320/1-1545 PPPFMFKPVK EEDDGLSGKH SMRTRRSRGS MSTLRSGRKK QPASPDGRAS 601 650 bmy_08794T0/1-1129 PINEDIRSSG RNSPSAASTS SNDSKAETVK KSAKKVKEEA SSPLKSTKRQ BACU003012/1-837 PINEDIRSSG RNSPSAASTS SNDSKAETVK KSAKKVKEEA SSPLKSTKRQ ENSTTRP00000006932/1-1527 PINEDIRSSG RNSPSAASTS SNDSKAETVK KSAKKVKEEA SSPLKSTKRQ ENSP00000338629/1-1566 PINEDIRSSG RNSPSAASTS SNDSKAETVK KSAKKVKEEA SSPLKSNKRQ ENSBTAP00000024320/1-1545 PINEDIRSSG RNSPSAASTS SNDSKAETVK KSAKKVKEEA TSPLKSTKRQ 651 700 bmy_08794T0/1-1129 REKVASDTDE ADRTSSKKTK TQEISRPNSP SEGEGESSDS RSVNDEGSSD BACU003012/1-837 REKVASDTEE ADRTSSKKTK TQEISRPNSP SEGEGESSDS RSVNDEGSSD ENSTTRP00000006932/1-1527 REKVASDTDE ADRTSSKKTK TQEISRPNSP SEGEGESSDS RSVNDEGSSD ENSP00000338629/1-1566 REKVASDTEE ADRTSSKKTK TQEISRPNSP SEGEGESSDS RSVNDEGSSD ENSBTAP00000024320/1-1545 REKGTSDTEE ADRTSSKKTK TQEISRPNSP SEGEGESSDS RSVNDEGSSD 701 750 bmy_08794T0/1-1129 PKDIDQDNRS TSPSIPSPQD NESDSDSSAQ QQMLQAQPPA LQAPGGAAPA BACU003012/1-837 PKDIDQDNRS TSPSIPSPQD NESDSDSSAQ QQTLQAQPPA LQAP------ ENSTTRP00000006932/1-1527 PKDIDQDNRS TSPSIPSPQD NESDSDSSAQ QQMLQAQPPA LQAPSGAAPA ENSP00000338629/1-1566 PKDIDQDNRS TSPSIPSPQD NESDSDSSAQ QQMLQAQPPA LQAPTGVTPA ENSBTAP00000024320/1-1545 PKDIDQDNRS TSPSIPSPQD NESDSDSSAQ QTT---QPSA LQAPGGATPA 751 800 bmy_08794T0/1-1129 PSSAAPGTAQ PPTPGPTPAT TA-PSQGSPS TSQPPSQPQA PSAPTPHAHV BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 PSSAAPGTAQ PPTPGPTPAT TA-PSQGSPS TSQPPTQPQA PSAPAPHAHV ENSP00000338629/1-1566 PSSAPPGTPQ LPTPGPTPSA TAVPPQGSPT ASQAPNQPQA PTAPVPHTHI ENSBTAP00000024320/1-1545 PSSALPGTAQ LPTQGPTPAP AG-PSQGSPS ASQPPTQPQA PSAAAPHAHI 801 850 bmy_08794T0/1-1129 QQAPALHPQR --------LP SPHPPLQPLT GPAGATPGPP HPQPPLHGQG BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 QQAPALHPQR --------LP SPHPPLQPLT GPAGATPGPP HPQPPLHGQG ENSP00000338629/1-1566 QQAPALHPQR PPSPHPPPHP SPHPPLQPLT GSAGQPSAPS HAQPPLHGQG ENSBTAP00000024320/1-1545 QQAPALHPQR --------LA SPHPPLQPLT GPAGQTTGPP HTQPPLHSQG 851 900 bmy_08794T0/1-1129 PPGPHGLQAG PLLQHPGPPQ PFGLPPQASQ ---------A AAHPHASLQP BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 PPGPHGLQAG PLLQHPGPPQ PFGLPPQASQ ---------A AAHPHASLQP ENSP00000338629/1-1566 PPGPHSLQAG PLLQHPGPPQ PFGLPPQASQ GQAPLGTSPA AAYPHTSLQL ENSBTAP00000024320/1-1545 PPGPHGLQAG SLLQHPGPPQ PFGLPPQVSQ ---------A AAHPHTSLQP 901 950 bmy_08794T0/1-1129 PASQSALQPP QPAREQPLPP APLAMPHIKP PPTTPIPQLP APQAHKHPPH BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 PASQSALQPP QPPREQPLPP APLAMPHIKP PPTTPIPQLP APQAHKHPPH ENSP00000338629/1-1566 PASQSALQSQ QPPREQPLPP APLAMPHIKP PPTTPIPQLP APQAHKHPPH ENSBTAP00000024320/1-1545 PAPQSALQPQ QPPREQPLPP APLAMPHIKP PPTTPIPQLP APQAHKHPPH 951 1000 bmy_08794T0/1-1129 LSGPSPFSMN ANLPPPPALK PLSSLSTHHP PSAHPPPLQL MPQSQPLPSS BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 LSGPSPFSMN ANLPPPPALK PLSSLSTHHP PSAHPPPLQL MPQSQPLPSS ENSP00000338629/1-1566 LSGPSPFSMN ANLPPPPALK PLSSLSTHHP PSAHPPPLQL MPQSQPLPSS ENSBTAP00000024320/1-1545 LSGPSPFSMN ANLPPPPALK PLSSLSTHHP PSAHPPPLQL MPQSQPLPSS 1001 1050 bmy_08794T0/1-1129 PAQPPVLTQS QSLAP--ASP PPAGLHQVPS QPPFAQHPFA PAGPPPITPP BACU003012/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006932/1-1527 PAQPPVLTQS QSLTP--ASH PPAGLHQVPP QPPFAQHPFA PAAPPPITPP ENSP00000338629/1-1566 PAQPPGLTQS QNLPPPPASH PPTGLHQVAP QPPFAQHPFV PGGPPPITPP ENSBTAP00000024320/1-1545 PAQPPVLTQS QGLPPAATSH PATGLHQVPP QPPFAQHPFV PGGPPPITPP 1051 1100 bmy_08794T0/1-1129 TCPSTSTPPA GPGPSAQPPC SAPVAAGGSV AGGAACPLPT VQVKEETLDE BACU003012/1-837 ---------- GPGPSAQPPC SAPVAAGGSV AGGAACPLPT VQVKEEALDE ENSTTRP00000006932/1-1527 TCPSTSTPPA GPGPSAQPPC SAPVAAGGSV AGGAACPLPT VQVKEEALDE ENSP00000338629/1-1566 TCPSTSTPPA GPGTSAQPPC SGAAASGGSI AGGSSCPLPT VQIKEEALDD ENSBTAP00000024320/1-1545 TCPSTSTPPA GSGPSAQPPC SAAVSSGGSV PGGATCPLPT VQIKEEALDD 1101 1150 bmy_08794T0/1-1129 AEEPESPPPP PRSPSPEPTV VDTPSHASQS ARFYKHLDRG YNSCARTDLY BACU003012/1-837 AEEPESPPPP PRSPSPEPTV VDTPSHASQS ARFYKHLDRG YNSCARTDLY ENSTTRP00000006932/1-1527 AEEPESPPPL PRSPSPEPTV VDTPSHASQS ARFYKHLDRG YNSCARTDLY ENSP00000338629/1-1566 AEEPESPPPP PRSPSPEPTV VDTPSHASQS ARFYKHLDRG YNSCARTDLY ENSBTAP00000024320/1-1545 AEEPESPPPP PRSPSPEPTV VDTPSHASQS ARFYKHLDRG YNSCARTDLY 1151 1200 bmy_08794T0/1-1129 FMPLAGSKLA KKREEAVEKA KREAEQKARE EREREKEKER EKERERERER BACU003012/1-837 FMPLAGSKLA KKREEAVEKA KREAEQKARE EREREKEKEK --ERERERER ENSTTRP00000006932/1-1527 FMPLAGSKLA KKREEAIEKA KREAEQKARE EREREKEKEK ---------- ENSP00000338629/1-1566 FMPLAGSKLA KKREEAIEKA KREAEQKARE EREREKEKEK ERERERERER ENSBTAP00000024320/1-1545 FMPLAGSKLA KKREEAIEKA KREAEQKARE EREREKEKEK ERERERERER 1201 1250 bmy_08794T0/1-1129 EAERAAQKAS SSAHEGRLGD PQLGGPGHMR PSFEPPPTTI AAVPPYIGPD BACU003012/1-837 EAERAAQKAS SSAHEGRLGD PQLGGPGHMR PSFEPPPTTI AAVPPYIGPD ENSTTRP00000006932/1-1527 -------KAS SSAHEGRLGD PQLGGPGHMR PSFEPPPTTI AAVPPYIGPD ENSP00000338629/1-1566 EAERAA-KAS SSAHEGRLSD PQLSGPGHMR PSFEPPPTTI AAVPPYIGPD ENSBTAP00000024320/1-1545 EAERAA-KAS SSAHEGRLSD PQLGGPGHMR PSFEPPPTTI AAVPPYIGPD 1251 1300 bmy_08794T0/1-1129 TPALRTLSEY ARPHVMSPTN RNHPFYVPLN PTDPLLAYHM PGLYNVDPTI BACU003012/1-837 TPALRTLSEY ARPHVMSPTN RNHPFYVPLN PTDPLLAYHM PGLYNVDPTI ENSTTRP00000006932/1-1527 TPALRTLSEY ARPHVMSPTN RNHPFYVPLN PTDPLLAYHM PGLYNVDPTI ENSP00000338629/1-1566 TPALRTLSEY ARPHVMSPTN RNHPFYMPLN PTDPLLAYHM PGLYNVDPTI ENSBTAP00000024320/1-1545 TPALRTLSEY ARPHVMSPTN RNHPFYVPLN PTDPLLAYHM PGLYNVDPTI 1301 1350 bmy_08794T0/1-1129 RERELREREL REREIREREL RERMKPGFEV KPPELDPLHP AANPMEHFAR BACU003012/1-837 RERELREREL REREIREREL RERMKPGFEV KPPELDPLHP AANPMEHFAR ENSTTRP00000006932/1-1527 RERELREREI REREIREREL RERMKPGFEV KPPELDPLHP AANPMEHFAR ENSP00000338629/1-1566 RERELREREI REREIREREL RERMKPGFEV KPPELDPLHP AANPMEHFAR ENSBTAP00000024320/1-1545 RERELREREI RERELREREL RERMKPGFEV KPPELDPLHP AANPMEHFAR 1351 1400 bmy_08794T0/1-1129 HGALTIPPAA GPHPFASFHP GLNPLERERL ALAGPQLRPE MSYPDRLAAE BACU003012/1-837 HGALTIPPAA GPHPFASFHP GLNPLERERL ALAGPQLRPE MSYPDRLAAE ENSTTRP00000006932/1-1527 HGALTIPPAA GPHPFASFHP GLNPLERERL ALAGPQLRPE MSYPDRLAAE ENSP00000338629/1-1566 HSALTIPPTA GPHPFASFHP GLNPLERERL ALAGPQLRPE MSYPDRLAAE ENSBTAP00000024320/1-1545 HGALTIPPAA GPHPFASFHP GLNPLERERL ALAGPQLRPE MSYPDRLAAE 1401 1450 bmy_08794T0/1-1129 RIHAERMASL TSDPLARLQM FNVTPHHHQH SHIHSHLHLH QQDPLHQGSA BACU003012/1-837 RIHAERMASL TSDPLARLQM FNVTPHHHQH SHIHSHLHLH QQDPLHQGT- ENSTTRP00000006932/1-1527 RIHAERMASL TSDPLARLQM FNVTPHHHQH SHIHSHLHLH QQDPLHQGSA ENSP00000338629/1-1566 RIHAERMASL TSDPLARLQM FNVTPHHHQH SHIHSHLHLH QQDPLHQGSA ENSBTAP00000024320/1-1545 RIHAERMASL TSDPLARLQM FNVTPHHHQH SHIHSHLHLH QQDPLHQGSA 1451 1500 bmy_08794T0/1-1129 GPVHPLVDPL TAGPHLARFP YPPGTLPSPL LGQPPHEHEM LRHPVFGESA BACU003012/1-837 ---------- ---------P YP-------- ---------- ---------- ENSTTRP00000006932/1-1527 GPVHPLVDPL TAGPHLARFP YPPGTLPSPL LGQPPHEHEM LRHPVFGTPY ENSP00000338629/1-1566 GPVHPLVDPL TAGPHLARFP YPPGTLPNPL LGQPPHEHEM LRHPVFGTPY ENSBTAP00000024320/1-1545 GPVHPLVDPL TAGPHLARFP YPPGTLPNPL LGQPPHEHEM LRHPVFGTPY 1501 1550 bmy_08794T0/1-1129 PGEGVGSRAE RGWWSARRPR SFMYSCIQHI PPEYWEATWE RGRRTPVPRE BACU003012/1-837 -RDLPGAIPP P--MSAAHQL QAMHAQSAEL QRLAMEQQWL HGH----PHM ENSTTRP00000006932/1-1527 PRDLPAAIPP P--MSAAHQL QAMHAQSAEL QRLAMEQQWL HGH----PHK ENSP00000338629/1-1566 PRDLPGAIPP P--MSAAHQL QAMHAQSAEL QRLAMEQQWL HGH----PHM ENSBTAP00000024320/1-1545 PRDLPGAIPP P--MSAAHQL QAMHAQSAEL QRLAMEQQWL HGH----PHM 1551 1600 bmy_08794T0/1-1129 LGVRGVNVYQ EPGRRRLKKE GDKQL BACU003012/1-837 HG--GHLPSQ EDYYSRLKKE GDKQL ENSTTRP00000006932/1-1527 HG--GHLPSQ EDYYXRLKKE GDKQL ENSP00000338629/1-1566 HG--GHLPSQ EDYYSRLKKE GDKQL ENSBTAP00000024320/1-1545 HG--GHLPSQ EDYYSRLKKE GDKQL