KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:00 2014 Check: 00 .. Name: bmy_22640T0/1-350 Len: 464 Check: 3780 Weight: 1.00 Name: ENSP00000333664/1-424 Len: 464 Check: 8098 Weight: 1.00 Name: ENSBTAP00000024335/1-424 Len: 464 Check: 9692 Weight: 1.00 Name: BACU019024/1-319 Len: 464 Check: 4062 Weight: 1.00 Name: ENSTTRP00000005176/1-335 Len: 464 Check: 8344 Weight: 1.00 // 1 50 bmy_22640T0/1-350 ---------- ---------- ---------- ---------- ---------- ENSP00000333664/1-424 MQRLQVVLGH LRGPADSGWM PQAAPCLSGA PQASAADVVV VHGRRTAICR ENSBTAP00000024335/1-424 MRRLQVVLGH LKGRPASDPE PQATPCWSGA RRASAEDVVV VHGRRTAIGR BACU019024/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005176/1-335 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_22640T0/1-350 ---------- ---------- ---------- ---------- ---------- ENSP00000333664/1-424 AGRGGFKDTT PDELLSAVMT AVLKDVNLRP EQLGDICVGN VLQPGAGAIM ENSBTAP00000024335/1-424 SGRGGFKDTT PDELLSAVMT AVLQDVKLSP AQLGDICVGN VLQPGAGATM BACU019024/1-319 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005176/1-335 ---------- ---------- ---------- ---------N VLQPGAGALM 101 150 bmy_22640T0/1-350 --------DI PETVPLSTVN RQCSSGLQAV ASIAGGIRNG SYDIGMACGV ENSP00000333664/1-424 ARIAQFLSDI PETVPLSTVN RQCSSGLQAV ASIAGGIRNG SYDIGMACGV ENSBTAP00000024335/1-424 ARIAQFLSDI PETVPLSAVN RQCSSGLQAV ASIAGGIRNG SYDIGMACGV BACU019024/1-319 -------SDI PETVPLSTVN RQCSSGLQAV ASIAGGIRNG SYDIGMAXXV ENSTTRP00000005176/1-335 ARIAQFLSDI PETVPLSAVN RQCSSGLQAV ASIAGGIRNG SYDIGMACGV 151 200 bmy_22640T0/1-350 ESMSLADRQN PGNVTSRLVE KEKARDCLIP MGITSENVAE RFGISREKQD ENSP00000333664/1-424 ESMSLADRGN PGNITSRLME KEKARDCLIP MGITSENVAE RFGISREKQD ENSBTAP00000024335/1-424 ESMSLADRGN PGNITSRLVE KEKARDCLIP MGITSENVAE QFGISREKQD BACU019024/1-319 ESMSLADRQN PGNVTSRLVE KEKARDCLIP MGITSENVAE RFGISREKQD ENSTTRP00000005176/1-335 ESMSLADRGN PGNVTSRLVE KEKARDCLIP MGITSENVAE RFGISREKQD 201 250 bmy_22640T0/1-350 TFALASQQKA ARAQSKGCFQ AEIVPVTTTV RDDKGTERSV TVAHDEGIRP ENSP00000333664/1-424 TFALASQQKA ARAQSKGCFQ AEIVPVTTTV HDDKGTKRSI TVTQDEGIRP ENSBTAP00000024335/1-424 TFALASQQKA ARAQRQGCFQ AEIVPVTTTV RDDKGTEQSI TVAQDEGIRP BACU019024/1-319 TFALASQQKA ARAQSKGCFQ AEIVPVTTTV RDDKGTERSV TVAHDEGIRP ENSTTRP00000005176/1-335 TFALASQQKA ARAQSKGCFQ AEIVPVTTTV RDDKGTERSV TVAHDEGIRP 251 300 bmy_22640T0/1-350 DTTLEGLAKL KPAFKKGGST TAGNSSQVSD GAAAILLARR SKAEXLGLPI ENSP00000333664/1-424 STTMEGLAKL KPAFKKDGST TAGNSSQVSD GAAAILLARR SKAEELGLPI ENSBTAP00000024335/1-424 NTTMEGLAKL KPAFKDGGST TAGNSSQVSD GAAAILLARR SKAEELGLPI BACU019024/1-319 DTTLEGLAKL KPAFKKGGST TAGNSSQVSD GAAAILLARR SKAEELGLPI ENSTTRP00000005176/1-335 NTTLEGLAKL KPAFKKGGST TAGNSSQVSD GAAAILLARR SKAEELGLPI 301 350 bmy_22640T0/1-350 LGVLRSYAVV GVPPDIMGVG PAYAIPVALQ KAGKMAPSHP RFGSNSCLSC ENSP00000333664/1-424 LGVLRSYAVV GVPPDIMGIG PAYAIPVALQ KAGLTVSDVD IFEINEAFAS ENSBTAP00000024335/1-424 LGVLRSYAVV GVPPDIMGIG PAYAIPVALQ KAGLTVDDVD IFEINEAFAS BACU019024/1-319 LGVLRSYAVV GVPPDIMGVG PAYAIPVALQ KAGLTVEDVD IFEINEAFAT ENSTTRP00000005176/1-335 LGVLRSYAVV GVPPDIMGVG PAYAIPVALQ KAGLTVEDVD IFEINEAFAS 351 400 bmy_22640T0/1-350 ------CCQR RVPGVGLRVP QSEGGAGQHP DPFLTPQLGP AHPSGTEADT ENSP00000333664/1-424 --QAAYCVEK ------LRLP PEKVN----- -----P-LGG AVALGHPLGC ENSBTAP00000024335/1-424 --QAVYCVEK ------LKLP LEKVN----- -----P-LGG AVALGHPLGC BACU019024/1-319 SLQAVYCVEK ------LQLP PEKVN----- -----P-LGG AVALGHPLGC ENSTTRP00000005176/1-335 --QVVYCVEK ------LQLP PEKVN----- -----P-LGG AVALGHPLGC 401 450 bmy_22640T0/1-350 PGSPASRPWM AQGPRESEKP AEGPLGQLRS FPLACRVDAP VSTGDRAERP ENSP00000333664/1-424 TGARQVITLL NELKRRGK-- --------RA YGV---VSMC IGTG------ ENSBTAP00000024335/1-424 TGARQVITLL NELKRRGK-- --------RA YGV---VSMC IGTG------ BACU019024/1-319 TGARQVITLL NKLKRRGR-- --------RA YGV---VSMC IGTG------ ENSTTRP00000005176/1-335 TGARQVITLL NELKRRGR-- --------RA YGV---VSMC IGTG------ 451 500 bmy_22640T0/1-350 SGAERPEEWA APLA ENSP00000333664/1-424 MGAAAVFEYP GN-- ENSBTAP00000024335/1-424 MGAAAVFEYP GN-- BACU019024/1-319 MGAAAVFEYP GN-- ENSTTRP00000005176/1-335 MGAAAVFEYP GN--