KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:02 2014 Check: 00 .. Name: ENSP00000330278/1-1364 Len: 1407 Check: 6118 Weight: 1.00 Name: BACU010751/1-282 Len: 1407 Check: 4067 Weight: 1.00 Name: ENSBTAP00000024351/1-1362 Len: 1407 Check: 9536 Weight: 1.00 Name: ENSTTRP00000014997/1-1383 Len: 1407 Check: 9128 Weight: 1.00 Name: bmy_07906T0/1-1271 Len: 1407 Check: 8399 Weight: 1.00 // 1 50 ENSP00000330278/1-1364 ---------- ---------- ---------- --------MA ELKVEAPASV BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 ---------- ---------- ---------- --------MA ELTVETRASV ENSTTRP00000014997/1-1383 STQGQXXXXX XXXXXXXXXX XXXXXXXXAP WNPEVASIMA ELKVETRTSV bmy_07906T0/1-1271 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000330278/1-1364 DWQKRCLTLE TQLFRFRLQA SKIRELLADK ---MQELEQR LLEAEQRAEN BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 DWQKRCLALE TQLFRFRLQA SKIRELLADK AEQMQELEQR LLDAEQRAEN ENSTTRP00000014997/1-1383 DWQKRCLALE SQLFRFRLQA SKIRELLADK ---MQELEQR LLEAEQRAED bmy_07906T0/1-1271 ---------- ---------- ---------- ---MQELEQR LLEAEQRAED 101 150 ENSP00000330278/1-1364 AETQVGVMEE KVKLSNLKNV DSEGSLHRKY QELLKAIKGK DELISQLEAQ BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 AETQVGVMEE KVKLSNLMNV DSAGSLHRKY QELLKAMQGK DELISELEAQ ENSTTRP00000014997/1-1383 AETQVGVMEE KVKLSNLKNV DSAGSLHRKY QELLNAMQGK DELIGRLEAQ bmy_07906T0/1-1271 AETQVGVMEE KVKLSNLKNV DSAGSLHRKY KEMLNAMQGK DELIGRLEAQ 151 200 ENSP00000330278/1-1364 LEKQKQMRAE EAKTVQEKAA KIKEWVTLKL AKLEMENQHL KSHNQRLVEQ BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 LEKQKQMRAE EAKVVQEKAA KIKEWVTLKL AELEMENQHL KSCNQHLVEQ ENSTTRP00000014997/1-1383 LEKQKKMRTE EAKIVQEKAA KIKEWVTLKL AELEMENQHL KSCNQHLVEQ bmy_07906T0/1-1271 LEKQKKMRAE EAKIVQEKAA KIKEWVTLKL AELEMENQHL KSCNQHLVEQ 201 250 ENSP00000330278/1-1364 VGSLQDALEA IQIAPSRKLL VPPYGAAEQD SVPSEPGIQP MGQDSGSQAQ BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 VGALQRAVEA LQMSPSGKLL VAPQGTTEQE SVPSGPGTQP AGQDSGPLAQ ENSTTRP00000014997/1-1383 VGALQRALEA LQMAPLGKLL VAPQGTTEQD CVPAGPGAQP VGQDGGAQAQ bmy_07906T0/1-1271 VGALQRALEA LQMAPSGKLL VAPQGTTEQD SVPAGPGAQP VGQDGGPQAQ 251 300 ENSP00000330278/1-1364 G-LKAAVLAP SPGALQSKDS VSEAASPLED SSSSTVHSGE TVEAKPLQPH BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 GALKAAIPAP SPGALQSKDS VPKAGSPMED SSSQTVHPGA TSEAKTLPLH ENSTTRP00000014997/1-1383 GALKAAMPVP SPGALQSKDS VPKAGSPLED SSSSMVHPGE ISEAETLPLH bmy_07906T0/1-1271 GALKAAMPVP SPAALQSKDS VPKAGSPLED SSSSRVHPGE ISGAKTLPLH 301 350 ENSP00000330278/1-1364 LGRESPPHQP CMKLLTFRCS SASWGEGLVT AQRGMLPGTK TSAREGGPGS BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 LGRQGSPGQL CLRPRTPRHA LASWGEGLVT AQGGTLPRTK TSAKEGGPGC ENSTTRP00000014997/1-1383 LGGQGSPGQL CLKPCTPRHG LASWGEGLVT AQGGTLPRTK TSAREGGPGC bmy_07906T0/1-1271 LGGQGCPGQL CLKPCTPRHG LASWGEGLVT AQGRTLPRTK TSAREGGPGC 351 400 ENSP00000330278/1-1364 SLTLPKVRAP GTPRDSIQLA KRHHSQPQVG HGHFGRVVNI ETEAFSALHP BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 SLTLPKARAP STLRDSIQLA KRHHSQPQAG PGHFSHVVRI EVGTLSAFHP ENSTTRP00000014997/1-1383 SLTLPKVRAP STHRDSIQLA KRHHSQPQAG PAHFDHVVSI ETGTLSALHS bmy_07906T0/1-1271 SLTLPKVRAP STHRDSIQLA KRHHSQPQAG PAHFNHVVSI EIGTLSALPS 401 450 ENSP00000330278/1-1364 SGLPELESRA RSREEPEKME MEEPPPAGKN EERESPKALG AELEEVELGN BACU010751/1-282 ---------- --------ME MEEQPPAG-- ---------- -KMEEVDLEN ENSBTAP00000024351/1-1362 HSLPKGVVRA KLREEPEKME MEEQPPVGEK E------AQG TELEEVDLEN ENSTTRP00000014997/1-1383 SSLPKVEAGP ELREEPEKME MDEQSPAG-- ---------- -KMEEVDLGN bmy_07906T0/1-1271 SSLPKVEAGP ELREETEKME MEEQPPAG-- ---------- -KMEEVDLGN 451 500 ENSP00000330278/1-1364 KPPTPPLHQF SSWESRIYAV ATSGMRLSDM SPRSNTACCA SSPPALVSPG BACU010751/1-282 KPPTPPLHRF PSWESRIYAV AASGVRLSEV SARSNAACCA SSPPALASPG ENSBTAP00000024351/1-1362 KPPTPPLHRF PSWESRIYAV ATSGMRLSEV PVRSNATCCA SSPPALASPG ENSTTRP00000014997/1-1383 KPPTPPLHRF PSWESRIYAV ATSGMRLSEV SARSNATCCA SSPPALASPG bmy_07906T0/1-1271 KPPTPPLHRF PSWESRIYAV ATSGMRLSEV SARSNATCCA SSPPALASPG 501 550 ENSP00000330278/1-1364 SFSGLVYKNV TVPVYTALKG RATQISNMPF MDESSGSDDD CSSQASFRIS BACU010751/1-282 PFSGLVCKNV TVPVYTALKG KATQISTVPF VDESSGSDDD CSSQASFRTS ENSBTAP00000024351/1-1362 PFSGLVYKNV AVPVYTALKG KATQISTVPF VDESSGSDDD CSSQASFRTS ENSTTRP00000014997/1-1383 PFSGLVCKNI TVPVYTALKG KAMQISTVPF VDESSGSDDD CSSQASFRTS bmy_07906T0/1-1271 PFSGLVCKNV TVPVYTALKG KATQISTVPF VDESSGSDDD CSSQASFRTS 551 600 ENSP00000330278/1-1364 VPSSESRKTS GLGSPRAIKR GVSMSSLSSE GDYAIPPDAC SLDSDYSEPE BACU010751/1-282 VPCSESRKTS GLGSPRAIKR GVSMSSLSSE GDYAIPPDAC SLDSDYSEPE ENSBTAP00000024351/1-1362 LPCSESRKTS GLGSPRAIKR GVSVSSLSSE GDYAIPPDAC SLDSDYSEPE ENSTTRP00000014997/1-1383 VPCSESRKTS GLGSPRAIKR GVSMSSLSSE GDYAIPPDAC SLDSDYSEPE bmy_07906T0/1-1271 VPCSESRKTS GLGSPRAIKR GVSMSSLSSE GDYAIPPDAC SLDSDYSEPE 601 650 ENSP00000330278/1-1364 HK-LQRTSSY STDGLGLGGE SLEKSGYLLK MGSQVKTWKR RWFVLRQGQI BACU010751/1-282 HK-LQRTSSY STDGLGPGGE SLEKSGYLLK MGSQVKTWKR RWFVLRQGQI ENSBTAP00000024351/1-1362 HK-LQRTSSY STDGLGPGGE SLEKSGYLLK MGSRVKTWKR RWFVLRQGQI ENSTTRP00000014997/1-1383 HKLLXXXXXX XXXXXXXXXE SLEKSGYLLK MGSRVKTWKR RWFVLRQGQI bmy_07906T0/1-1271 HK-LQRTSSY SIDGLGPGGE SLEKSGYLLK MGSRVKTWKR RWFVLRQGQI 651 700 ENSP00000330278/1-1364 MYYKSPSDVI RKPQGQVDLN SRCQIVRGEG SQTFQLISEK KTYYLTADSP BACU010751/1-282 MYYKSPSDII RKPQGQVELN SRCQIVRGEG AQTFQV---- ---------- ENSBTAP00000024351/1-1362 MYYKSPSDVI RKPQGQVELN SRCQIVRGEG AQTFQLISEK KTYYLTADSP ENSTTRP00000014997/1-1383 MYYKSPSDVI RKPQGQVELN SRCQIVRGEG AQTFQLISEK KTYYLTADSP bmy_07906T0/1-1271 MYYKSPSDVI RKPQGQVELN SRCQIVRGEG AQTFQLISEK KTYYLTADSP 701 750 ENSP00000330278/1-1364 SLLEEWIRVL QSLLKVQATG PPALLRGGTK PTVKGWLTKV KHGHSKVVWC BACU010751/1-282 ---------- -SML----LA ASALDRRGA- ---------- ---------- ENSBTAP00000024351/1-1362 SLLEEWIRVL QSLLKVQAIG PPALPQGGTK PTVKGWLTKV KHGHSKLVWC ENSTTRP00000014997/1-1383 SLLEEWIRVL QSLLKVQAIG PPALTQGGAK PAVKGWLTKV KHGHSKLVWC bmy_07906T0/1-1271 SLLEEWIRVL QSLLKVQAIG PPALPQGGTK PTVKGWLTKV KHGHSKLVWC 751 800 ENSP00000330278/1-1364 ALVGKIFYYY RSHEDKRPLG CLPVRDAHIE EVDRSCDSDE DYEAGGTRRL BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 ALVGRTFYYY RSHEDKRPLG RLPVRDARIE EVDRSCDSDE DYEAGGTRRL ENSTTRP00000014997/1-1383 ALVGRTFYYY RSHEDKRPLG RLPVQDARIE EVDRSCDSDE DYEAGGTRRL bmy_07906T0/1-1271 ALVGRTFYYY RSHEDKRPLG RLPVRDARIE EVDRSCDSDE DYEAGGTRRL 801 850 ENSP00000330278/1-1364 LSSHCTLVIH PTEHSPTYLL IGTKHEKDTW LYHLTVAAGG SSAKVGTAYE BACU010751/1-282 ---------- ---------- ---------- ---------- -----GFGY- ENSBTAP00000024351/1-1362 LSSHYTLVIH PPEHSPTYLL IGTKHEKDTW LYHLTVAAGG SSAKVGTAYE ENSTTRP00000014997/1-1383 LSSHCTLVIH PPEHSPTYLL IGTKHEKDTW LYHLTVAAGG SSAKVGTAYE bmy_07906T0/1-1271 LSSHCTLVIH PPEHSPTYLL IGTKHEKDTW LYHLTVAAGG SSAKVGTAYE 851 900 ENSP00000330278/1-1364 QLIGKLMDGE GDPDSPLWRH PMLCYSKDGL YASLTTLPSE ALQTEALKLF BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 QLIGKLMDGE GDPDSPLWRH PMLCYSKDGL YTSLTTLPSE ALQTEAVKLF ENSTTRP00000014997/1-1383 QLIGKLMDGE GDPDSPLWRH PMLCXXXXXX XXXXXXXXXX XXXTKAVKLF bmy_07906T0/1-1271 QLIGKLMDGE GDPDSPLWRH PMLCYSKDGL YTSLTTLPSE ALQTEAVKLF 901 950 ENSP00000330278/1-1364 KSCQLFINVP VEAASVDYHV SLAQTALQVC LVHPELQSEI YCQLMKQTSC BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 KSCQLFINVP VEAASVDYHV SLAQTALQVC LVHPELQSEI YCQLMKQISC ENSTTRP00000014997/1-1383 KSCQLFINVP VEAASVDYHV SLAQTALQVC LVHPELQSEL YCQLMKQTSC bmy_07906T0/1-1271 KSCQLFINVP VEAASVDYHV SLAQTALQVC LVHPELQSEL YCQLMKQTSC 951 1000 ENSP00000330278/1-1364 RPPQKYSLMQ CWQLLALCAP LFLPQHHFLW YVKQQLQRHA DPRSETGQYA BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 RPPQKYSLMQ CWQLLALCAP LFLPQHHFLW YVKQQLQRHA DPRNETGQYA ENSTTRP00000014997/1-1383 RPPHKCSLMQ CWQLLALCAP LFLPQHHFLW YVKQQLQRHA DPRNETGQYA bmy_07906T0/1-1271 RPPQKYSLMQ CWQLLALCAP LFLPQHHFLW YVKQQLQRHA DPRNETGQYA 1001 1050 ENSP00000330278/1-1364 TYCQRAVERT LRTGEREARP SRMEVVSILL RNPFHHSLPF SIPVHFTNGT BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 TYCQRAVERT LQTGEREARP SRMEVVSILL RNPFHHSLPF SIPVHFANGT ENSTTRP00000014997/1-1383 TYCQRAVERT LQTGEREARS R--EVVSLL- --PSHSS--F SIPXXXXXXX bmy_07906T0/1-1271 TYCQRAVERT LQTGEREARP SRMEVVSILL RNPFHHSLPF SIPVHFANGT 1051 1100 ENSP00000330278/1-1364 YHVVGFDGSS TVDEFLQRLN QEIGMRKPSH SGFALFTDDP SGRDLEHCLQ BACU010751/1-282 ----GSDG-- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 YQVVGFDGSS TVDEFLQRLN QETGMRKSSH SGFALFTDDP AGRDLEHCLQ ENSTTRP00000014997/1-1383 XXVVGFDGSS TVDEFLQRLN QETGMRKSSH SGFALFTDDP SGRDLEHCLQ bmy_07906T0/1-1271 YQVVGFDGSS TVDEFLQRLN QETGMRKSSH SGFALFTDDP SGRDLEHCLQ 1101 1150 ENSP00000330278/1-1364 GSVKICDAIS KWEQAMKELH PGKSEGGTRV VKLMYKNRLY FRSQVKGETD BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 GSVKICDAIS KWEQALKELH TGKSEGGTRV VKLIYKNRLY FRSQVKGETE ENSTTRP00000014997/1-1383 GSVKICDAIS KWEQALKELH SGKSEGGTRV VKLMYKNRLY FRSQVKGETE bmy_07906T0/1-1271 GSVKICDAIS KWEQALKELH SGKSEGGTRV VKLMYKNRLY FRSQVKGETE 1151 1200 ENSP00000330278/1-1364 RERLLLASQT SREIVAGRFP INKELALEMA ALMAQVEYGD LEKPALPGPG BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 RERLLLASQT NGEIVAGRFP VNKELALEMA ALMAQVEYGD LERPILPGPG ENSTTRP00000014997/1-1383 RERLLLASQT SGEIVAGRFP VNKELALEMA ALMAQVEYGD LEKPILPGPG bmy_07906T0/1-1271 RERLLLASQT SAEIVAGRFP VNKELALEMA ALMAQVEYGD LEKPILPGPG 1201 1250 ENSP00000330278/1-1364 GTSPAKAQHL LQQVLDRFHP RRYRHGAPAE QLRHLADMLT TKWATLQGCS BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 GTPSAKAQHH LQQVLDRFYP RRYRHGAPPE QLRHLADQLT TKWAALQGCS ENSTTRP00000014997/1-1383 GTPSAKALHH LQQVLDRFYP RRYRHGAPLE QL-HLADQLT TKWAALQGCS bmy_07906T0/1-1271 VTPPAKALHH LQQVLDRFYP RRYRHGAPLE QLRHLADQLT TKWAALQGCS 1251 1300 ENSP00000330278/1-1364 PPECIRIYLT VARKWPFFGA KLFAAQPAQL SSKENALVWI AVNEDGVSIL BACU010751/1-282 ---------- ---------- ---------- ---------- --NKDGAE-- ENSBTAP00000024351/1-1362 SPECVRIYLT VARKWPLFGA KLFAAQPAQL SSKESALVWI AVNEDGVSIL ENSTTRP00000014997/1-1383 SPECIRIYLT VARKWPLFGA KLFAAQPAQP SSKENTLVWI AVNEDGVSIL bmy_07906T0/1-1271 SPECIRIYLT VARKWPLFGA KLFAAQPAQL SSKENSLVWI AVNEDGVSIL 1301 1350 ENSP00000330278/1-1364 DHNTMQVHIT YPYSSVTTFG GCRDDFMLVI RSIPDKSSGK SHIEKLIFRM BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 DHNTMQLHVT YPYSSVMTFG GCRDDFMLVI RSVPDQSSGK GHVEKLIFRM ENSTTRP00000014997/1-1383 DHNTMQVHVT YPYSSVMTFG GCRDDFMLVI RSTSDQSSGK GHIEKLIFRM bmy_07906T0/1-1271 DHNTMQVHVT YPYSSVMTFG GCRDDFMLVI RSISDQSSGK GHIEKLIFRM 1351 1400 ENSP00000330278/1-1364 AAPKIAEATF IMASYMNHCT TTVNPPTNPP GACQLWELDG RQFFSSVSCA BACU010751/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024351/1-1362 AAPKIAEVTL ILASYMNHCS TTVNPPSTPA AACQPWELDG RQFFASVPCA ENSTTRP00000014997/1-1383 AAPKIAEVTF IMASYMNHCS TTVDPPPNPP AACQPWELDG RQFFASVPCA bmy_07906T0/1-1271 AAPKVGLEA- ---------- ---------- ---------A KTFY------ 1401 1450 ENSP00000330278/1-1364 TKGPTLL BACU010751/1-282 ------- ENSBTAP00000024351/1-1362 AKGPTLL ENSTTRP00000014997/1-1383 AKGPTLL bmy_07906T0/1-1271 ---PAVV