KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:03 2014 Check: 00 .. Name: BACU002381/1-832 Len: 848 Check: 1055 Weight: 1.00 Name: ENSBTAP00000024362/1-792 Len: 848 Check: 1156 Weight: 1.00 Name: bmy_06032T0/1-776 Len: 848 Check: 2815 Weight: 1.00 Name: ENSP00000002829/1-785 Len: 848 Check: 4051 Weight: 1.00 Name: ENSTTRP00000007302/1-784 Len: 848 Check: 501 Weight: 1.00 // 1 50 BACU002381/1-832 MPVAGLLLWA SLLTGAWPAT PTQDYLPATP RVRLSFKELK ATGTAHFFNF ENSBTAP00000024362/1-792 MPVAGLLLWA SLLTGAWPAA PSQDYLPAMP RIRLSYKELK ATGTAHFFNF bmy_06032T0/1-776 VRLDGLQE-P SLLLCPLPT- ---------- -------ELK ATGTAHFFNF ENSP00000002829/1-785 MLVAGLLLWA SLLTGAWPSF PTQDHLPATP RVRLSFKELK ATGTAHFFNF ENSTTRP00000007302/1-784 MPVAGLLLWA SLLTGAWPAT PTQDYLPATP RVRLSFKELK TTGTAHFFNF 51 100 BACU002381/1-832 LLNTTDYRIL LKDEDHDRMY VGSKDYVLSL DLHDINREPL IIHWAASPQR ENSBTAP00000024362/1-792 LLNTSDYRIL FKDEDHDRMY VGSKDYVLSL DLHDINREPL IIHWAATPQR bmy_06032T0/1-776 LLNTTDYRIL LKDEDHDRMY VGSKDYVLSL DLHDINREPL IIHWAASPQR ENSP00000002829/1-785 LLNTTDYRIL LKDEDHDRMY VGSKDYVLSL DLHDINREPL IIHWAASPQR ENSTTRP00000007302/1-784 -LNTTDYRIL LKDEDHDRMY VGSKDYVLSL DVHDINREPL IIHWAASPQR 101 150 BACU002381/1-832 IEECVLSGKD GNGECGNFVR LIQPWNRTHL YVCGTGAYNP MCTYVNRGRR ENSBTAP00000024362/1-792 IEECVLSGKD GNGECGNFVR LIQPWNRTHL YVCGTGAYNP VCAYVNRGRR bmy_06032T0/1-776 IEECVLSGKD GNGECGNFVR LIQPWNRTHL YVCGTGAYNP MCTYVNRGRR ENSP00000002829/1-785 IEECVLSGKD VNGECGNFVR LIQPWNRTHL YVCGTGAYNP MCTYVNRGRR ENSTTRP00000007302/1-784 IEECVLSGKD GNGECGNFVR LIQPWNRTHL YVCGTGAYNP MCTYVNRGRR 151 200 BACU002381/1-832 AQATPWTQMQ VVRGRGSRAT DDALHPTPTA PRQDYIFYLE PEKLESGKGK ENSBTAP00000024362/1-792 AEATPWTQMQ VVRGRGSRAT DGALYPTPTA PRQDYVFYLE PEKLESGKGK bmy_06032T0/1-776 AQATPWTQMQ VVRGRGSRAT DDALHPTPTA PRQDYIFYLE PEKLESGKGK ENSP00000002829/1-785 AQATPWTQTQ AVRGRGSRAT DGALRPMPTA PRQDYIFYLE PERLESGKGK ENSTTRP00000007302/1-784 AQATPWTQMQ VVRGRGSRAT DGALHPTPTA PRQDYIFYLE PEKLESGKGK 201 250 BACU002381/1-832 CPYDPKLDTA SALINEELYA GVYIDFMGTD AAIFRTLGKQ TAMRTDQYNS ENSBTAP00000024362/1-792 CPYDPKLDTA SALINEELYA GVYIDFMGTD AAIFRTLGKQ TAMRTDQYNS bmy_06032T0/1-776 CPYDPKLDTA SALINEELYA GVYIDFMGTD AAIFRTLGKQ TAMRTDQYNS ENSP00000002829/1-785 CPYDPKLDTA SALINEELYA GVYIDFMGTD AAIFRTLGKQ TAMRTDQYNS ENSTTRP00000007302/1-784 CPYDPKLDTA SALINEELYA GVYIDFMGTD AAIFRTLGKQ TAMRTDQYNS 251 300 BACU002381/1-832 RWLNDPSFIH AELIPDSAER NDDKLYFFFR ERSAEAPQSP AVYARIGRIC ENSBTAP00000024362/1-792 RWLNDPSFIH AELIPDSAER NDDKLYFFFR ERSIEAPQSP AVYARIGRIC bmy_06032T0/1-776 RWLNDPSFIH AELIPDSAER NDDKLYFFFR ERSAEAPQSP AVYARIGRIC ENSP00000002829/1-785 RWLNDPSFIH AELIPDSAER NDDKLYFFFR ERSAEAPQSP AVYARIGRIC ENSTTRP00000007302/1-784 RWLNDPSFIH AELIPDSAER NDDKLYFFFR ERSAEAPQSP AVYARIGRIC 301 350 BACU002381/1-832 LNDDGGHCCL VNKWSTFLKA RLVCSVPGED GIETHFDELQ -----DVFVQ ENSBTAP00000024362/1-792 LNDDGGHCCL VNKWSTFLKA RLVCSVPGED GIETHFDELQ -----DVFVQ bmy_06032T0/1-776 LNDDGGHCCL VNKWSTFLKA RLVCSVPGED GIETHFDELR PHPGGELWVR ENSP00000002829/1-785 LNDDGGHCCL VNKWSTFLKA RLVCSVPGED GIETHFDELQ -----DVFVQ ENSTTRP00000007302/1-784 LNDDGGHCCL VNKWSTFLKA RLVCSVPGED GIETHFDELQ -----DVFVQ 351 400 BACU002381/1-832 Q------TQD VRNPVIYAVF TSSGSVFRGS AVCVYSMADI RMVFNGPFAH ENSBTAP00000024362/1-792 Q------TQD VRNPVIYAVF TSSGSVFRGS AVCVYSMADI RMVFNGPFAH bmy_06032T0/1-776 AGWGGTLGQG SAPPAAAACL ARS-SVFRGS AVCVYSMADI RMVFNGPFAH ENSP00000002829/1-785 Q------TQD VRNPVIYAVF TSSGSVFRGS AVCVYSMADI RMVFNGPFAH ENSTTRP00000007302/1-784 Q------TQD VRNPVIYAVF TSSGSVFRGS AVCVYSMADI RMVFNGPFAH 401 450 BACU002381/1-832 KEGPNYQWMP FSGKMPYPRP GTCPGGTFTP SMKSTKDYPD EVINFMRTHP ENSBTAP00000024362/1-792 KEGPNYQWMP FSGKMPYPRP GTCPGGTFTP SMKSTKDYPD EVINFMRSHP bmy_06032T0/1-776 KEGPNYQWMP FSGKMPYPRP GTCPGGTFTP SMKSTKDYPD EVINFMRTHP ENSP00000002829/1-785 KEGPNYQWMP FSGKMPYPRP GTCPGGTFTP SMKSTKDYPD EVINFMRSHP ENSTTRP00000007302/1-784 KEGPNYQWMP FSGKMPYPRP GTCPGGTFTP SMKSTKDYPD EVINFMRTHP 451 500 BACU002381/1-832 LMYQAVYPLQ RRPLVVRTGA PYRLTTVAVD QVDAADGRYE VLFLGTDRGT ENSBTAP00000024362/1-792 LMYQAIYPLQ RRPLVVRTGA PYRLTTVAVD QVDAADGRYE VLFLGTDRGT bmy_06032T0/1-776 LMYQAVYPLQ RRPLVVRTGA PYRLTTVAVD QVDAADGRYE VLFLGTDRGT ENSP00000002829/1-785 LMYQAVYPLQ RRPLVVRTGA PYRLTTIAVD QVDAADGRYE VLFLGTDRGT ENSTTRP00000007302/1-784 LMYQAVYPLQ RRPLVVRTGS PYRLTTVAVD QVDAADGRYE VLFLGTDRGT 501 550 BACU002381/1-832 VQKVIVLPKD DQEMEELMLE EVEVFKDPAP VKTMSISSKR QQLYVASAVG ENSBTAP00000024362/1-792 VQKVIVLPKD DQEMEELMLE EVEVFKDPAP VKTMTISSKR QQLYVASAVG bmy_06032T0/1-776 VQKVIVLPKD DQEMEELMLE EVEVFKDPAP VKTMTISSKR QQLYVASAVG ENSP00000002829/1-785 VQKVIVLPKD DQELEELMLE EVEVFKDPAP VKTMTISSKR QQLYVASAVG ENSTTRP00000007302/1-784 VQKVIVLPKD DQEMEELMLE EVEVFKDPAS VKTMTISSKR QQLYVASAVG 551 600 BACU002381/1-832 VTHLSLHRCQ AYGAACADCC LARDPYCAWD GQACSRYTAS SKRRSRRQDV ENSBTAP00000024362/1-792 VTQLSLHRCQ AYGAACADCC LARDPYCAWD GQACSRYTAS SKRRSRRQDV bmy_06032T0/1-776 VTHLSLHRCQ AYGAACADCC LARDPYCAWD GQACSRYTAS SKRRSRRQDV ENSP00000002829/1-785 VTHLSLHRCQ AYGAACADCC LARDPYCAWD GQACSRYTAS SKRRSRRQDV ENSTTRP00000007302/1-784 VTHLSLHRCQ AYGAACADCC LARDPYCAWD GQACSRYTAS SKRRSRRQDV 601 650 BACU002381/1-832 RHGNPIRQCR GFNSNANKNA VESVQYGVAG SAAFLECQPR SPQATVKWLF ENSBTAP00000024362/1-792 RHGNPIRQCR GFNSNANKNA VESVQYGVAG STAFLECQPR SPQATVKWLF bmy_06032T0/1-776 RHGNPIRQCR GFNSNANKNA VESVQYGVAG SAAFLECQPR SPQATVKWLF ENSP00000002829/1-785 RHGNPIRQCR GFNSNANKNA VESVQYGVAG SAAFLECQPR SPQATVKWLF ENSTTRP00000007302/1-784 RHGNPIRQCR GFNSNANKNA VESVQYGVAG SAAFLECQPR SPQATVKWLF 651 700 BACU002381/1-832 QRDPSDRRRE MRADDRFLRT EQGLLLRALQ LGDRGLYSCT ATENNFKHVI ENSBTAP00000024362/1-792 QRDPSDRRRE VHADDRFLRT EQGLLLRALQ SGDSGLYSCT ATENNFKHII bmy_06032T0/1-776 QRDPSDRRRE MRADDRFLRT EQGLLLRALQ LGDRGLYSCT ATENNFKHVI ENSP00000002829/1-785 QRDPGDRRRE IRAEDRFLRT EQGLLLRALQ LSDRGLYSCT ATENNFKHVV ENSTTRP00000007302/1-784 QRDPSDRRRE MRADDRFLRT EQGLLLRALQ LGDRGLYSCT ATENNFKHVI 701 750 BACU002381/1-832 TRVQLHVLGQ DAVHAALFPP SAELRTQNWQ DKSTALTVQL PLPWESTKFP ENSBTAP00000024362/1-792 TRVQLHVLGQ EDIRTALFPP PAA------- -SIPPPAASI PPPPGTGPPK bmy_06032T0/1-776 TRVQLHVLGQ DAVHAALFPP PA-------- -------VSV PPPSGAGPPT ENSP00000002829/1-785 TRVQLHVLGR DAVHAALFPP LS-------- -------MSA PPPPGAGPPT ENSTTRP00000007302/1-784 TRVQLHVLGQ DAVHAALFPP PA-------- -------VSV PPPPGAGPPT 751 800 BACU002381/1-832 FFLHPSSQIS AEGPAQANVQ RQGRPGYVGS CWRG-----G SGAGGPRPNL ENSBTAP00000024362/1-792 PRYQELAQLL AQ-PEVGLIH Q-----YCQG YWRHVPPSPR EAPGAPRP-- bmy_06032T0/1-776 PPYQELAQLL AQ-PEVGLIH Q-----YCQG YWRHVPPSPR EAPGAPRP-- ENSP00000002829/1-785 PPYQELAQLL AQ-PEVGLIH Q-----YCQG YWRHVPPSPR EAPGAPRS-- ENSTTRP00000007302/1-784 PPYQELAQLL AQ-PEVGLIH Q-----YCQG YWRHVPPSPR EAPGAPRP-- 801 850 BACU002381/1-832 TSQALAGEAN SYGGARIQQG LGPYLAGKGS QVATGRQWNG PTLSKPNT ENSBTAP00000024362/1-792 ---------- ---------- ---------P KPQDQKKPRN RRHHPPDT bmy_06032T0/1-776 ---------- ---------- ---------P EPQDRKKPRN RRHHPPDT ENSP00000002829/1-785 ---------- ---------- ---------P EPQDQKKPRN RRHHPPDT ENSTTRP00000007302/1-784 ---------- ---------- ---------P EPQDQKKPRN RRHHPPDT