KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:04 2014 Check: 00 .. Name: bmy_02549T0/1-412 Len: 601 Check: 8742 Weight: 1.00 Name: ENSTTRP00000016238/1-567 Len: 601 Check: 1995 Weight: 1.00 Name: ENSP00000327436/1-594 Len: 601 Check: 3539 Weight: 1.00 Name: BACU007697/1-501 Len: 601 Check: 9732 Weight: 1.00 Name: ENSBTAP00000024364/1-594 Len: 601 Check: 9517 Weight: 1.00 // 1 50 bmy_02549T0/1-412 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016238/1-567 -------GKK SRVKTQKSGT GATASVSPKE TLNLTSELLQ KCSSPAPGPG ENSP00000327436/1-594 ------MGKK SRVKTQKSGT GATATVSPKE ILNLTSELLQ KCSSPAPGPG BACU007697/1-501 METSQKMGKK SRVKTQKSGT GATASVSPKE TLNLTSELLQ KCSSPAPGPG ENSBTAP00000024364/1-594 ------MGKK SRVKTQKSGT GAAASVSPKE TLNLTSELLQ KCSSPAPGPG 51 100 bmy_02549T0/1-412 ---------- ---------- ---------- -MKYEQEETK FLLSKAEPVA ENSTTRP00000016238/1-567 KEWEEYVQIR SLVEKIRKKQ KGLSVTFDGK REDYFPDLMK WASENGASVE ENSP00000327436/1-594 KEWEEYVQIR TLVEKIRKKQ KGLSVTFDGK REDYFPDLMK WASENGASVE BACU007697/1-501 KEWEEYVQIR SLVEKIRKKQ KGLSVTFDGK REDYFPDLMK WASENGASVE ENSBTAP00000024364/1-594 KEWEEYVQIR SLVEKIRKKQ KGLSVTFDGK REDYFPDLMK WASENGASVE 101 150 bmy_02549T0/1-412 ILDKPSF--- GLG------- ----HFYLIP ---------- ----YCPAYG ENSTTRP00000016238/1-567 GFEMVNFKEE GFGLRATRDI KAEELFLWVP RKLLMTVESA KNSVLGPLYS ENSP00000327436/1-594 GFEMVNFKEE GFGLRATRDI KAEELFLWVP RKLLMTVESA KNSVLGPLYS BACU007697/1-501 GFEMVNFKEE GFGLRATRDI KAEELFLWVP RKLLMTVESA KNSVLGPLYS ENSBTAP00000024364/1-594 GFEMVNFKEE GFGLRATRDI KAEELFLWVP RKLLMTVESA KNSVLGPLYS 151 200 bmy_02549T0/1-412 AS-------- ---EYSVVSD ---------- --DKLPCTCD G--------- ENSTTRP00000016238/1-567 QDRILQAMGN ITLAFHLLCE RADPNSFWQP YIQTLPSEYD TPLYFEEDEV ENSP00000327436/1-594 QDRILQAMGN IALAFHLLCE RASPNSFWQP YIQTLPSEYD TPLYFEEDEV BACU007697/1-501 QDRILQAMGN ITLAFHLLCE RADPNSFWQP YIQTLPSEYD TPLYFEEDEV ENSBTAP00000024364/1-594 QDRILQAMGN ITLAFHLLCE RADPNSFWQP YIQTLPSEYD TPLYFEEDEV 201 250 bmy_02549T0/1-412 ---------- ---------- -------NAS KTHPHAHKLP LKDSFTYEDY ENSTTRP00000016238/1-567 RYLQSTQAIH DVFSQYKNTA RQYAYFYKVI QTHPHAHKLP LKDSFTYEDY ENSP00000327436/1-594 RYLQSTQAIH DVFSQYKNTA RQYAYFYKVI QTHPHANKLP LKDSFTYEDY BACU007697/1-501 RYLQSTQAIH DVFSQYKNTA RQYAYFYKVI QTHPHAHKLP LKDSFTYEDY ENSBTAP00000024364/1-594 RYLQSTQAIH DVFSQYKNTA RQYAYFYKVI QTHPHAHKLP LKDSFTYEDY 251 300 bmy_02549T0/1-412 RWAVSSVMTR QNQIPTEDGS RVTLALIPLW DMCNHTNGLI TTGYNLEDDR ENSTTRP00000016238/1-567 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI TTGYNLEDDR ENSP00000327436/1-594 RWAVSSVMTR QNQIPTEDGS RVTLALIPLW DMCNHTNGLI TTGYNLEDDR BACU007697/1-501 RWAVSSVMTR QNQIPTEDGS RVTLALIPLW DMCNHTNGLI TTGYNLEDDR ENSBTAP00000024364/1-594 RWAVSSVMTR QNQIPTEDGS RVTLALIPLW DMCNHTSGLI TTGYNLEDDR 301 350 bmy_02549T0/1-412 CECVALQDFR AGEQIYIFYG TRSNAEFVIH SGFFFDNNSH DRVKIKLGVS ENSTTRP00000016238/1-567 CECVALQDFR AGEQIYIFYG TRSNAEFVIH SGFFFDNNSH DRVKIKLGVS ENSP00000327436/1-594 CECVALQDFR AGEQIYIFYG TRSNAEFVIH SGFFFDNNSH DRVKIKLGVS BACU007697/1-501 CECVALQDFR AGEQIYIFYG TRSNAEFVIH SGFFFDNNSH DRVKIKLGVS ENSBTAP00000024364/1-594 CECVALQDFR AGEQIYIFYG TRSNAEFVIH SGFFFDNNSH DRVKIKLGVS 351 400 bmy_02549T0/1-412 KSDRLYAMKA EVLARAGIPT SSVFALHFTE PPISAQLLAF LRVFCMTEEE ENSTTRP00000016238/1-567 KSDRLYAMKA EVLARAGIPT SSVFALHFTE PPISAQLLAF LRVFCMTEEE ENSP00000327436/1-594 KSDRLYAMKA EVLARAGIPT SSVFALHFTE PPISAQLLAF LRVFCMTEEE BACU007697/1-501 KSDRLYAMKA EVLARAGIPT SSVFALHFAE PPISAQLLAF LRVFCMTEEE ENSBTAP00000024364/1-594 KSDRLYAMKA EVLARAGIPT SSVFALHFTE PPISAQLLAF LRVFCMTEEE 401 450 bmy_02549T0/1-412 LKEHLLGDNA IDRIFTLGNS EYPVSWDNEV KLWTFLEDRA SLLLKTYKTT ENSTTRP00000016238/1-567 LKEHLLGDNA IDRIFTLGNS EYPVSWDNEV KLWTFLEDRA SLLLKTYKTT ENSP00000327436/1-594 LKEHLLGDSA IDRIFTLGNS EFPVSWDNEV KLWTFLEDRA SLLLKTYKTT BACU007697/1-501 LKEHLLGDNA IDRIFTLGNS EYPVSWDNEV KLWTFLEDRA SLLLKTYKTT ENSBTAP00000024364/1-594 LKEHLLGDSA IDRIFTLGNS EYPVSWDNEV RLWTFLEDRA SLLLKTYKTT 451 500 bmy_02549T0/1-412 IE-------- ---------- --LRLGEKEI LEKAVKSAAA NREHCRRQVE ENSTTRP00000016238/1-567 IEEDKSFLKN HALSARATMA IKLRLGEKEI LEKAVKSAAA NREHCRRQAE ENSP00000327436/1-594 IEEDKSVLKN HDLSVRAKMA IKLRLGEKEI LEKAVKSAAV NREYYRQQME BACU007697/1-501 IEEDKSFLKN HALSVRATMA VKLRLGQR-- ---------- ---------- ENSBTAP00000024364/1-594 IEEDKSFLKN HDLSARATMA IKLRLGEKEI LERAVKSAAA NREFYRRQME 501 550 bmy_02549T0/1-412 GHAPLPKYEE SNPGLLE-GV ADSRLPLVLR DPEGEAGAQE ALTLTEAVRR ENSTTRP00000016238/1-567 GHAPLPKYEE SNPGLLE-GV ADSRLPLVLR DPDGEAGAQE ALTLTEAVRR ENSP00000327436/1-594 EKAPLPKYEE SNLGLLESSV GDSRLPLVLR NLEEEAGVQD ALNIREAISK BACU007697/1-501 ---------- -----LQ--- ---------- ----STGWST AKTLY----- ENSBTAP00000024364/1-594 ERAPLPKYEE GGAGLLE-GV ADSQLPLVLR NLEGEAGAQE ALTLSEAVRR 551 600 bmy_02549T0/1-412 AKAAEHGLVN GENSIPNGTR SEKESLNQEE SKRATGDAKE SSSDSAEEVG ENSTTRP00000016238/1-567 AKAAEHGLVN GENSIPNGTS SEKES----- ---------- ---------- ENSP00000327436/1-594 AKATENGLVN GENSIPNGTR SENESLNQ-E SKRAVEDAKG SSSDSTAGVK BACU007697/1-501 ---------- -----PTGPG RKRRV----- ---------- ---------- ENSBTAP00000024364/1-594 AQAAEHGLVN GESSIPNGTR SEKETLTQEE SKRAAGDAKE PSSDSAEDVA 601 650 bmy_02549T0/1-412 K ENSTTRP00000016238/1-567 - ENSP00000327436/1-594 E BACU007697/1-501 - ENSBTAP00000024364/1-594 K