KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:07 2014 Check: 00 .. Name: ENSP00000465419/1-928 Len: 964 Check: 7511 Weight: 1.00 Name: ENSBTAP00000024404/1-913 Len: 964 Check: 7961 Weight: 1.00 Name: ENSTTRP00000004143/1-943 Len: 964 Check: 9887 Weight: 1.00 Name: bmy_15765T0/1-907 Len: 964 Check: 4349 Weight: 1.00 Name: BACU006477/1-913 Len: 964 Check: 3366 Weight: 1.00 // 1 50 ENSP00000465419/1-928 -------MAV RFQVADMEEL TIWEQHTATL SKDPRRGFGI AISGGRDRPG ENSBTAP00000024404/1-913 ---------- ------MEEL TIWEQYTATI SKDPRRGFGI AISGGRDRSG ENSTTRP00000004143/1-943 IDLMSTFPVT SHQVLDMEEL TIWEQHTVTI SKDPRRGFGI AISGGRDRPG bmy_15765T0/1-907 ---MSTFPVT SHQVLDMEEL TIWEQHTATI SKDPRRGFGI AISGGRDRPS BACU006477/1-913 ---------- ------MEEL TIWEQHTATI SKDPHRGFGI AISGGRDRPS 51 100 ENSP00000465419/1-928 GSMVVSDVVP GGPAEGRLQT GDHIVMVNGV SMENATSAFA IQILKTCTKM ENSBTAP00000024404/1-913 GSVVVSDVVP GGPAEGWLQT GDQIVMVNGV SMESVTSTFA IQILKTCTKM ENSTTRP00000004143/1-943 GSVVVSDVVP GGPAEGRLQT GDHIVMVNGV SMESVTSTFA IQILKTCTKV bmy_15765T0/1-907 GSVVVSDVVP GGPAEGRLQT GDHIVMVNGV SMESVTSTFA IQILKTCTKV BACU006477/1-913 GSVVVSDVVP GGPAEGRLQT GDHIVMVNGV SMESVTSTFA IQILKTCTKV 101 150 ENSP00000465419/1-928 ANITVKRPRR IHLPATKASP SSPGRQDSDE DDGPQRVEEV DQGRGYDGDS ENSBTAP00000024404/1-913 ANITVKRPRK VQVPATKVT- SAPGHQDSDE EDRLRCLEEA DHGRGYEGDT ENSTTRP00000004143/1-943 ANITVKRPRK VQLPATKAT- SGLGHQDSDE EDGPRRLDEA DHGQGYEGDT bmy_15765T0/1-907 ANITVKRPRK VQLPTTKAT- SGRGHQDSDE EDGPRRLDEA DHGQGYEGDT BACU006477/1-913 ANITVKRPRK VQLPTTKAT- SGLGHQDSDE EDGPRRLDEA DHGQGYEGDT 151 200 ENSP00000465419/1-928 SSGSGRSWDE RSRRPRPGRR GRAGSHGRRS PGGGSEANG- LALVSGFKRL ENSBTAP00000024404/1-913 SSGSGRSWGE RSRRPRAGRR SRASSRGRRS PGGGSEANG- LALVSGFKRL ENSTTRP00000004143/1-943 SSGSGHSWGE RSRRPRTGRR SQASSHGRRS PSGGSEANGX XXXXXXXXXX bmy_15765T0/1-907 SSGSGHSWGE RSRRPRTGRR SRAGSHGRRS PGGGSEANG- LALVSGFKRL BACU006477/1-913 SSGSGHSWGE RSRRPRTGRR SRAGSHGRRS PGSGSEANG- LALVSGFKRL 201 250 ENSP00000465419/1-928 PRQDVQMKPV KSVLVKRRDS EEFGVKLGSQ IFIKHITDSG LAARHRGLQE ENSBTAP00000024404/1-913 PRQDVQMRPV KSVLVRKRES DDFGVKLGSQ IFIKHITDSG LAAQNSGLQE ENSTTRP00000004143/1-943 XXXXXXXXXX XXXXXXXXXX XXFGVRLGSQ IFIKHITESG LAAQNSRLRE bmy_15765T0/1-907 PRQDVQMRPV KSVLVRRRDS DDFGVKLGSQ IFIKHITESG LAAQNSRLQE BACU006477/1-913 PRQDVQMRPV KSVLVRRRDS DDFGVKLGSQ IFIKHITESG LAARNSRLQE 251 300 ENSP00000465419/1-928 GDLILQINGV SSQNLSLNDT RRLIEKSEGK LSLLVLRDRG QFLVNIPPAV ENSBTAP00000024404/1-913 GDLILQINGV SSENLSLSDT RQLIEKSEGK LTLLVLRDRG QFLVNIPPAV ENSTTRP00000004143/1-943 GDLILQINGV SSENLSLSDT RQLIEKSEGK LTLLVLRDRG QFLVNIPPAV bmy_15765T0/1-907 GDLILQINGV SSENLSLSDT RQLIEKSEGK LTLLVLRDRG QFLVNIPPAV BACU006477/1-913 GDLILQINGV SSENLSLSDT RQLIEKSEGK LTLLVLRDRG QFLVNIPPAV 301 350 ENSP00000465419/1-928 SDSDSSPLE- ---------- -DISDLASEL SQAPPSHIPP PPRHAQRSPE ENSBTAP00000024404/1-913 SDSDSSLLE- ---------- -DISDLGSEL SQAPPSHIPP PPQHGQQSPD ENSTTRP00000004143/1-943 SDSDSSLLEE GVPVAETRFP ADISDLGSEL SQAPPSHVPP PPQHGQQSPD bmy_15765T0/1-907 SDSDSSLLE- ---------- -DISDLGSEL SQAPPSHVPP PPQHGQWSPD BACU006477/1-913 SDSDSSLLE- ---------- -DISDLGSEL SQAPPSHVPP PPQHGQRSPD 351 400 ENSP00000465419/1-928 ASQTDSPVES PRLRRESSVD SRTISEPDEQ RSELPRESSY DIYRVPSSQS ENSBTAP00000024404/1-913 TSRTNSPVES HRLPRESSVD SRTASEP-DS ----PRPRNY DIYRVPSGQS ENSTTRP00000004143/1-943 ASRTSSPMES PQLRQEGSVD SRTPSEPGES ----PRQRSC DMHSVPSGQS bmy_15765T0/1-907 ASRTSSPMES PQLRQESSVD SRTASEP-DS ----PRQRSC DMHSVPSGQS BACU006477/1-913 ASRTSSPMES PQLRQESSVD SRTASEP-DS ----PRQRSC DMHSVPSGQS 401 450 ENSP00000465419/1-928 MEDRGYSPDT RVVRFLKGKS IGLRLAGGND VGIFVSGVQA GSPADGQGIQ ENSBTAP00000024404/1-913 VEDHGYSPDS HVVRFFKGTN IGLRLAGGND VGIFVSGVQA GSPADGQGIL ENSTTRP00000004143/1-943 VEDHGYSPAS RVVRFLKGAN IGLRLAGGND VGIFVSGVQA GSPADGQGIQ bmy_15765T0/1-907 VEDHGYSPAS RVVRFLKGAN IGLRLAGGND VGIFVSGVQA GSPADGQGIQ BACU006477/1-913 VEDHGYSPAS RVVRFLKGAN IGLRLAGGND VGIFVSGVQA GSPADGQGIQ 451 500 ENSP00000465419/1-928 EGDQILQVND VPFQNLTREE AVQFLLGLPP GEEMELVTQR KQDIFWKMVQ ENSBTAP00000024404/1-913 EGDEILQVND TPFQNLTREE AVNFLLGLPV GEEVELVTQR KQDIFQKMVR ENSTTRP00000004143/1-943 EGDEILQVND TPFRNLTREE AVQFLLELPP GEEVELVTQR KQDIFRKMVQ bmy_15765T0/1-907 EGDEILQVND TPFQNLTREE AVQFLLELPP GEEVELVMQR KQDIFRKMVQ BACU006477/1-913 EGDEILQVND TPFQNLTREE AVQFLLELPP GEEVELVTQR KQDIFRKMVQ 501 550 ENSP00000465419/1-928 SRVGDSFYIR THFELEPSPP SGLGFTRGDV FHVLDTLHPG PGQSHARGGH ENSBTAP00000024404/1-913 SGLGDSFYIR THFEMEPSPP SGLGFTRGDV FHVLDTLYPG PGQSPTRGGQ ENSTTRP00000004143/1-943 SGVGDSFYIR MHFEMEPSPP SGLGFTRGDV FHVLDTLYPG PGQSHARGGH bmy_15765T0/1-907 SRVGDSFYIR MHFEMEPSPP SGLGFTRGDV FHVLDTLYPG PGQSHARGGH BACU006477/1-913 SRVGDSFYIR MHFEMEPSPP SGLGFTRGDV FHVLDTLYPG PGQSHARGGH 551 600 ENSP00000465419/1-928 WLAVRMGRDL REQERGIIPN QSRAEQLASL EAAQRAVGVG PGSSAGSNAR ENSBTAP00000024404/1-913 WLAVRMGRDL REKERGIIPN QSRAEQLASL EAAQRAVGVI PGASVGSNSR ENSTTRP00000004143/1-943 WLAVRMGRDL REKERGIIPS QSRAEQLASL EAAQRAVGVG PGASAGSSTR bmy_15765T0/1-907 WLAVRMGRDL REKERGIIPN QSRAEQLASL EAAQRVAGFG PGASAGSSTR BACU006477/1-913 WLAVRMGRDL REKERGIIPN QSRAEQLASL EAAQRAVGVG PGASAGSSTR 601 650 ENSP00000465419/1-928 AEFWRLRGLR RGAKKTTQRS REDLSALTRQ GRYPPYERVV LREASFKRPV ENSBTAP00000024404/1-913 AEFWRLRGLR RGAKKTTHRS REDLSALTKQ GHYPPYERVV LREASFKRPV ENSTTRP00000004143/1-943 AEFWRLRGLR RGAKKTTHRS REDLSALTRQ GHYPPYERVV LREASFKRPV bmy_15765T0/1-907 AEFWRLRGLR RGAKKTTHRS REDLSALTRQ GHYPPYERVV LREASFKRPV BACU006477/1-913 AEFWRLRGLR RGAKKTTHRS REDLSALTRQ GHYPPYERVV LREASFKRPV 651 700 ENSP00000465419/1-928 VILGPVADIA MQKLTAEMPD QFEIAETVSR TDSPSKIIKL DTVRVIAEKD ENSBTAP00000024404/1-913 VILGPVADIA MQKLTAEMPD KFEIAESVSR TESPSKIIRL DTVRVIAEKD ENSTTRP00000004143/1-943 VILGPVADIA MQKLTAEMPD EFEIAESMSR TDSPSKIIKL DTVRVIAEKD bmy_15765T0/1-907 VILGPVADIA MQKLTAEMPD EFEIA----- ---------- ---------- BACU006477/1-913 VILGPVADIA MQKLTAEMPD EFEIAESMSR TDSPSKIIKL DTVRVIAEKD 701 750 ENSP00000465419/1-928 KHALLDVTPS AIERLNYVQY YPIVVFFIPE SRPALKALRQ WLAPASRRST ENSBTAP00000024404/1-913 KHALLDVTPS AIERLNYVQY YPIVVFCVPE SRTALKALRQ WLAPASRRSS ENSTTRP00000004143/1-943 KHALLDVTPS AIERLNYVQY YPIVVFCVPE SRTALKALRQ WLAPASRRSS bmy_15765T0/1-907 ---------- AIERLNYVQY YPIVVFCVPE SRTALKALRQ WLAPTSRRNS BACU006477/1-913 KHALLDVTPS AIERLNYVQY YPIVVFCVPE SRTALKALRQ WLAPTSHRNS 751 800 ENSP00000465419/1-928 RRLYAQAQKL RKHSSHLFTA TIPLNGTSDT WYQELKAIIR EQQTRPIWTA ENSBTAP00000024404/1-913 RRLYAQAQKL RKYSDHLFTA TIPLQGTSDS WYQELKAVIQ EQQMRPIWTA ENSTTRP00000004143/1-943 RRLYAQAQKL RKHSDHLFTA TIPLQGTSDS WYKELKAVIR EQQTRPIWTA bmy_15765T0/1-907 RRLYAQAQKL RKHSDHLFTA TIPLQGTSDS WYQELKAIIR EQQTRPIWTA BACU006477/1-913 RRLYAQAQKL RKHSDHLFTA TIPLQGTSDS WYQELKAIIR EQQTRPIWTA 801 850 ENSP00000465419/1-928 ED-------- --------QL DGSLEDNLDL PHHGLADSSA DLSCDSRVNS ENSBTAP00000024404/1-913 ED-------- --------QL DNSSEDNLDL PHHGLADSSA DLSCDSRVNS ENSTTRP00000004143/1-943 ED-------- --------QL DSSSEDNLDL PYRSLADSSA DLSCDSRLNS bmy_15765T0/1-907 EDQIREGRGS AQPGHVHPQL DSSSEDNLDL PHRSLADSSA DLSCDSRLNS BACU006477/1-913 ED-------- --------QL DSSSEDNLDL PHRSLADSSA DLSCDSRLNS 851 900 ENSP00000465419/1-928 DYETDGEGGA YTDGEGYTDG EGGPYTDVDD EPPAPALARS SEPVQADESQ ENSBTAP00000024404/1-913 DYETDGEGSV YTDGEGYTDG EGGPHTDVDE GPRVPALARS SEPVLGDEAR ENSTTRP00000004143/1-943 DYETDGEGGV YTDGEGYTDG EGGPHMDVDE GPPAPALARS SEPVLEDEPR bmy_15765T0/1-907 DYETDGEGGV YTDGEGYTDG EGGPHMDVDE GPLAPALARS SEPVLEDEPQ BACU006477/1-913 DYETDGEGGV YTDGEGYTDG EGGPHTDVDE GPLAPALARS SEPVLEDEPR 901 950 ENSP00000465419/1-928 SPRDRGRISA HQGAQVDSRH PQGQWRQDSM RTYEREALKK KFMRVHDAES ENSBTAP00000024404/1-913 IPQHHGRPSG PQEAQMDSRH PQGQRRQESM RTYEREALRK KFTRARDVES ENSTTRP00000004143/1-943 ILQDHGRSSG HQGTQVDGHH PQGQRRQDSM RTYERDALRK KFTRARDVES bmy_15765T0/1-907 ILQDHGRSSG HRGTQVDGRH PQGQWRQDSM RTYERDALRK KFTRARDVES BACU006477/1-913 ILQDHGRSSG HRGTQVDGRH PQGQWRQDSM RTYERDALRK KFTRARDVES 951 1000 ENSP00000465419/1-928 SDEDGYDWGP ATDL ENSBTAP00000024404/1-913 SDEDGYDWGP ATDL ENSTTRP00000004143/1-943 SDEDGYDWGP ATDL bmy_15765T0/1-907 SDEDGYDWGP ATDL BACU006477/1-913 SDEDGYDWGP ATDL