KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:08 2014 Check: 00 .. Name: BACU018479/1-392 Len: 410 Check: 9735 Weight: 1.00 Name: ENSP00000342156/1-201 Len: 410 Check: 6803 Weight: 1.00 Name: ENSBTAP00000024407/1-180 Len: 410 Check: 4900 Weight: 1.00 Name: bmy_03154T0/1-194 Len: 410 Check: 6940 Weight: 1.00 Name: ENSTTRP00000013363/1-198 Len: 410 Check: 1044 Weight: 1.00 // 1 50 BACU018479/1-392 MRSLVLLLSL LLT------- -------AAP FGLLGEETRQ VSLKVISDWL ENSP00000342156/1-201 MAWMLLLILI MVH------- -------PGS CAL------- --------WV ENSBTAP00000024407/1-180 MAQMLLFIFI IIR------- -------PGS CVL------- --------WV bmy_03154T0/1-194 MARMLLLIFI TVHPVIGEVF LWVFSLPPGS CAL------- --------WV ENSTTRP00000013363/1-198 MARMLFLIFI TVH------- -------PGS CAL------- --------WV 51 100 BACU018479/1-392 DPSQNLLHIQ AVGATSTLHY VWSGLGPPAV LLVATNTPNS TLSVNWSLLI ENSP00000342156/1-201 SQPPEIRTLE ---------- -----GSSAF LPCSFNASQG RLAI------ ENSBTAP00000024407/1-180 SQPPEIRTQE ---------- -----GSPAF LPCSFNASQG SLAI------ bmy_03154T0/1-194 SQPPEIRTQE ---------- -----GTPAF LPCSFNASQG KLAI------ ENSTTRP00000013363/1-198 SQPPEIHTQE ---------- -----GSPAF LPCSFNASQG KLAI------ 101 150 BACU018479/1-392 SSEPDGALMV LPKESIQFSS ALVFTRLFEF DSTNTSDAAA KPPGKSYPPY ENSP00000342156/1-201 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024407/1-180 ---------- ---------- ---------- ---------- ---------- bmy_03154T0/1-194 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013363/1-198 ---------- ---------- ---------- ---------- ---------- 151 200 BACU018479/1-392 SLADFSW--D NITDSLDPAS LSATFRGHPI HDPTGAFASG SLAFRVQAFS ENSP00000342156/1-201 --GSVTWFRD EVVPGKEVRN GTPEFRGRLA PLASSRFLHD HQA-ELHIRD ENSBTAP00000024407/1-180 --GSVTWYRD KVAPGMEVRN ETAEFQGRLA PLPSSRFLCD HQA-ELHIWD bmy_03154T0/1-194 --GSVTWYQD KVAPGKEVRN ETSEFRGRLA PLPSSRFLCD HQA-ELHIWD ENSTTRP00000013363/1-198 --GSVTWYQD KVAPGKEVRN ETAEFRGRLA PLPSSRFLCD HQA-ELHIWD 201 250 BACU018479/1-392 RSGRPAQPPR LLHTADTCQL EVDLVGVSPR GNRSLFGLEV ATLGHGPDCP ENSP00000342156/1-201 VRGHDAS--- -IYV---CRV EV-------- -----LGLGV GT-GNG---- ENSBTAP00000024407/1-180 TRGRDTG--- -VYV---CRV EV-------- -----LGLGV GT-GNG---- bmy_03154T0/1-194 TRARDAG--- -VYV---CRV EV-------- -----LGLGV GT-GNG---- ENSTTRP00000013363/1-198 TRARDTG--- -VYV---CRV EV-------- -----LGLGV GT-GNG---- 251 300 BACU018479/1-392 SVREQRSIDD EYAPAVFQLD QLLWGSLPSG FMQWRPVAFS QKQGGRESAM ENSP00000342156/1-201 ----TRLVVE KEHPQLGAGT VLL---LRAG FY-------- ---------- ENSBTAP00000024407/1-180 ----TLLVVE EGPPQLAAGT VLL---LRAG FY-------- ---------- bmy_03154T0/1-194 ----TLLVVE KGPPQLAAGT VFL---LRAG FY-------- ---------- ENSTTRP00000013363/1-198 ----TLLVVE KGPPQLAAGT VFL---LRAG FY-------- ---------- 301 350 BACU018479/1-392 PCQASPLYRT LAYLLPQSPI VRAFFGSQNN FCAFNLTFGA STGPGYWDQH ENSP00000342156/1-201 ---------- ---------- ---------A VSFLSVAVGS TV---YYQGK ENSBTAP00000024407/1-180 ---------- ---------- ---------A FSFLSVAMGS SM---YYQGK bmy_03154T0/1-194 ---------- ---------- ---------A FSFLSVAMGS TI---YYQGK ENSTTRP00000013363/1-198 ---------- ---------- ---------A FSFLSVAMGS TI---YYQGK 351 400 BACU018479/1-392 YLSWSMLLGV GTPPVDALSS LVLGIVAVAL GAPALML--L AGGVFLLLGR ENSP00000342156/1-201 CLTWK----- GPRR--QLPA VVPAPLPPPC GSSAHLLPPV PGG------- ENSBTAP00000024407/1-180 YHCHK----- GTPC------ ---------- ----HSL--- DGL------- bmy_03154T0/1-194 CHCHM----- GTHC------ ---------- ----HSL--- DGL------- ENSTTRP00000013363/1-198 RLVWK----- GPRR--ELPR TVLEPLPPSS DSTHLLL--- PGG------- 401 450 BACU018479/1-392 KWYSEYQPIN ENSP00000342156/1-201 ---------- ENSBTAP00000024407/1-180 ---------- bmy_03154T0/1-194 ---------- ENSTTRP00000013363/1-198 ----------