KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:11 2014 Check: 00 .. Name: ENSTTRP00000012412/1-1034 Len: 1053 Check: 4388 Weight: 1.00 Name: ENSP00000317903/1-976 Len: 1053 Check: 923 Weight: 1.00 Name: ENSBTAP00000024431/1-988 Len: 1053 Check: 6159 Weight: 1.00 Name: bmy_03887T0/1-1009 Len: 1053 Check: 2594 Weight: 1.00 Name: BACU008152/1-1028 Len: 1053 Check: 7888 Weight: 1.00 // 1 50 ENSTTRP00000012412/1-1034 MSNSNTTQET LEIMKESEKK LVEESVNKNK FISKTPSKEE IEKESEDTSL ENSP00000317903/1-976 MSNSNTTQET LEIMKESEKK LVEESVNKNK FISKTPSKEE IEKECEDTSL ENSBTAP00000024431/1-988 MSNSNTTQET LEIMKESEKK LVEESVNKNK FISKTPSKEE IEKESEDTSL bmy_03887T0/1-1009 MSNSNTTQET LEIMKESEKK LVEESVNKNK FISKTPSKEE IEKESEDTSL BACU008152/1-1028 MSNSNTTQET LEIMKESEKK LVEESVNKNK LISKTPSKEE IEKESEDTTL 51 100 ENSTTRP00000012412/1-1034 RQETQ----- ---RRTSNHG HARKRAKSNS KLKLVRSLAV CEESSAPFAD ENSP00000317903/1-976 RQETQ----- ---RRTSNHG HARKRAKSNS KLKLVRSLAV CEESSTPFAD ENSBTAP00000024431/1-988 RQETQ----- ---RRTSNHG HARKRAKSNS KLKLVRSLAV CEESSAPFVD bmy_03887T0/1-1009 RQETQ----- ---RRTSNHG HARKRAKSNS KLKLVRSLAV CEESSAPFAD BACU008152/1-1028 RQETQDFEFL FDKRRTSNHG HARKRAKSNS KLKLVRSLAV CEESSAPFAD 101 150 ENSTTRP00000012412/1-1034 GPLETQDIIQ LHISCPSDK- RRKSTKDVSE K-DKDKNKEK VARKMLSRDS ENSP00000317903/1-976 GPLETQDIIQ LHISCPSDKE EEKSTKDVSE KEDKDKNKEK IPRKMLSRDS ENSBTAP00000024431/1-988 GPLETQDIIQ LHISCPSDKE EEKSTKDVSE KEDKDKNKEK VPRRMLSRDS bmy_03887T0/1-1009 GPLETQDIIQ LHISCPSDKE EEKSTKDVSE KEDKDKNKEK VPRKMLSRDS BACU008152/1-1028 GPPETQDIIQ LHISCPSDKE EEKSTKDVSE KEDKDKNREK VPRKMLSRDS 151 200 ENSTTRP00000012412/1-1034 SQEYTDSTGI DLHEFLVNTL KKNPRDRMML LKLEQEILDF INDNNNQFKK ENSP00000317903/1-976 SQEYTDSTGI DLHEFLVNTL KKNPRDRMML LKLEQEILEF INDNNNQFKK ENSBTAP00000024431/1-988 SQEYTDSTGI DLHEFLVNTL KKNPRDRMML LKLEQEILDF INDNNNQFKK bmy_03887T0/1-1009 SQEYTDSTGI DLHEFLVNTL KKNPRDRMML LKLEQEILDF INDNNNQFKK BACU008152/1-1028 SQEYTDSTGI DLHEFLVNTL KKNP------ ---------- ----SNQFKK 201 250 ENSTTRP00000012412/1-1034 FPQMTSYHRM LLHRVAAYFG MDHNVDQTGK AVIINKTSNT RIPEQRFSEH ENSP00000317903/1-976 FPQMTSYHRM LLHRVAAYFG MDHNVDQTGK AVIINKTSNT RIPEQRFSEH ENSBTAP00000024431/1-988 FPQMTSYHRM LLHRVAAYFG MDHNVDQTGK AVIINKTSNT RIPEQRFSEH bmy_03887T0/1-1009 FPQMTSYHRM LLHRVAAYFG MDHNVDQTGK AVIINKTSNT RIPEQRFSEH BACU008152/1-1028 FPQMTSYHRM LLHRVAAYFG MDHNVDQTGK AVIINKTSNT RIPEQRFSEH 251 300 ENSTTRP00000012412/1-1034 IKDEKNTEFQ QRFILKRDDA SMDRDDNQIR VPLQDGRRSK SIEEREEEYQ ENSP00000317903/1-976 IKDEKNTEFQ QRFILKRDDA SMDRDDNQ-- ---------- ---------- ENSBTAP00000024431/1-988 IKDEKNTEFQ QRFILKRDDA SMDRDDNQIR VPLQDGRRSK SIEEREEEYQ bmy_03887T0/1-1009 IKDEKNTEFQ QRFILKRDDA SMDRDDNQIR VPLQDGRRSK SIEEREEEYQ BACU008152/1-1028 IKDEKNTEFQ QRFILKRDDA SMDRDDNQIR VPLQDGRRSK SIEEREEEYQ 301 350 ENSTTRP00000012412/1-1034 RVRERIFARE TGQNGYLNDI RLSKEAFSSS SHKRRQIFRG NREGLSCTSS ENSP00000317903/1-976 ---------- TGQNGYLNDI RLSKEAFSSS SHKRRQIFRG NREGLSRTSS ENSBTAP00000024431/1-988 RVRERIFARE TGQNGYLNDI ---------- --------RG NREGLSRTSS bmy_03887T0/1-1009 RVRERIFARE TGQNGYLNDI ---------- --------RG NREGLSRTSS BACU008152/1-1028 RVRERIFARE TGQNGYLNDI RLSKEAFSSS SHKRRQIFRG NREGLSRTSS 351 400 ENSTTRP00000012412/1-1034 SRQSSTDSEL KSLEPRPWSS TDSDGSVRSM RPPVTKASSF SGISILTRGD ENSP00000317903/1-976 SRQSSTDSEL KSLEPRPWSS TDSDGSVRSM RPPVTKASSF SGISILTRGD ENSBTAP00000024431/1-988 SRQSSTDSEL KSLEPRPWSS TDSDGSVRSM RPPVTKASSF SGISILTRGD bmy_03887T0/1-1009 SRQSSTDSEL KSLEPRPWSS TDSDGSVRSM RPPVTKASSF SGISILTRGD BACU008152/1-1028 SRQSSTDSEL KSLEPRPWSS TDSDGSVRSM RPPVTKASSF SGISILTRGD 401 450 ENSTTRP00000012412/1-1034 SIGSSKGGSA GRISRPGMAL GAPEVCSQVT SSQSVRGLLP CTA--QQQQP ENSP00000317903/1-976 SIGSSKGGSA GRISRPGMAL GAPEVCNQVT SSQSVRGLLP CTAQQQQQQQ ENSBTAP00000024431/1-988 SIGSSKGGSA GRISRPGMAL GAPEVAT-MS SSQSVRGLLP CTA--QQQ-- bmy_03887T0/1-1009 SIGSSKGGSA GRISRPGMAL GAPEVCNQVT SSQSVRGLLP CTA--QQQQP BACU008152/1-1028 SIGSSKGGSA GRISRPGMAL GAPEVCNQVT SSQSVRGLLP CTA--QQQQP 451 500 ENSTTRP00000012412/1-1034 QQQLPALPPT PQQQPPLNNH MISQPVPALQ PSPQPVQFSP GSCPQVLLPV ENSP00000317903/1-976 QQQLPALPPT PQQQPPLNNH MISQ------ ---------- ---------- ENSBTAP00000024431/1-988 ---------- -QQQP----- ---QPVPALQ PSPQ------ ---------L bmy_03887T0/1-1009 QQQLPALPPT PQQQPPLNNH MISQPVPALQ PSPQPVQFSP GSCPQVLLPV BACU008152/1-1028 QQQLPALPPT PQQQPPLNNH MISQPVPALQ PSPQPVQFSP GSCPQVLLPV 501 550 ENSTTRP00000012412/1-1034 SPPQQYNM-- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXHPQ ENSP00000317903/1-976 ---------- -ADDLSNPFG QMSLSRQGST EAADPSAALF QTPLISQHPQ ENSBTAP00000024431/1-988 SPPQQYNMIS QADDLSNPFG QMSLSRQGST EAADPSSALF QPPLISQHPQ bmy_03887T0/1-1009 SPPQQYNM-- -TDDLSNPFG QMSLSRQGST EAADPSSALF QPPLISQHPQ BACU008152/1-1028 SPPQQYNM-- -TDDLSNPFG QMSLSRQGST EAADPSSALF QPPLISQHPQ 551 600 ENSTTRP00000012412/1-1034 QTSFIMTSTG QPL-TSSYS- SNHAPTQQ-- LPPQGYMQPP QQIQVSYYPP ENSP00000317903/1-976 QTSFIMASTG QPLPTSNYST SSHAPPTQQV LPPQGYMQPP QQIQVSYYPP ENSBTAP00000024431/1-988 QTSFIMASTG QPLPTSNYST SSHAPPTQQV LPPQGYMQPP QQIQVSYYSP bmy_03887T0/1-1009 QTSFIMASTG QPLPTSSYST SNHAPPT--- ---------- QQIQVSYYPP BACU008152/1-1028 QTSFIMASTG QPLPTSSYST SNHAPPTQQV LPPQGYMQPP QQIQVSYYPP 601 650 ENSTTRP00000012412/1-1034 GQYPNSNQQY RPLSHPVAYS PQRGQQLPQP SQQPXXXXXX XXXXXXXXXX ENSP00000317903/1-976 GQYPNSNQQY RPLSHPVAYS PQRGQQLPQP SQQPGLQPMM PNQQQAAYQG ENSBTAP00000024431/1-988 GQYPNSNQQY RPLSHPVAYS PQRGQQLPQP SQQPGLQPMM PNQQQAAYQG bmy_03887T0/1-1009 GQYPNSNQQY RPLSHPVAYS PQRGQQLPQP SQQPGLQPMM PNQQQAAYQG BACU008152/1-1028 GQYPNSNQQY RPLSHPVAYS PQRGQQLPQP SQQPGLQPMM PNQQQAAYQG 651 700 ENSTTRP00000012412/1-1034 XXXXXXXXXX XXXXXXXXXX XXXMQGLVVQ YTPLRSYQVT VGNDSQNVVQ ENSP00000317903/1-976 MIGVQQPQNQ GLLSSQRSSM GGQMQGLVVQ YTPLPSYQVP VGSDSQNVVQ ENSBTAP00000024431/1-988 MIGVQQPQNQ GLLSNQRSGM GGQMQGLVVQ YTPLPSYQVP VGNDSQNVVQ bmy_03887T0/1-1009 MIGVQQPQNQ GLLSSQRSSM GGQMQGLVVQ YTPLPSYQVP VGNDSQNVVQ BACU008152/1-1028 MIGVQQPQNQ GLLSSQRSSM GGQMQGLVVQ YTPLPSYQVP VGNDSQNVVQ 701 750 ENSTTRP00000012412/1-1034 PPFQQPMLVP ASQSVQGGLP AGGVPVYYSM IPPAQQNGTS PSVGFVQPPG ENSP00000317903/1-976 PPFQQPMLVP VSQSVQGGLP AAGVPVYYSM IPPAQQNGTS PSVGFLQPPG ENSBTAP00000024431/1-988 PPFQQPMLVP ASQSVQGALP AGGVPVYYSM IPPAQQNGTS PSVGFLQPPG bmy_03887T0/1-1009 PPFQQPMLVT ASQSVQGGLP AGGVPVYYSM IPPAQQNGTS PSVGFLQPPG BACU008152/1-1028 PPFQQPMLVT ASQSVQGGLP AGGVPVYYSM IPPAQQNGTS PSVGFLQPPG 751 800 ENSTTRP00000012412/1-1034 SEQYQMPQSP SPCSPPXXXX XXXXVSPSGP GVVVMQLNVP NGPQPPQNPS ENSP00000317903/1-976 SEQYQMPQSP SPCSPPQMPQ QYSGVSPSGP GVVVMQLNVP NGPQPPQNPS ENSBTAP00000024431/1-988 SEQYQMPQSP SPCSPPQMPQ QYSGVSPSGP GVVVMQLNVP NGPQPPQNPS bmy_03887T0/1-1009 SEQYQMPQSP SPCSPPQMPQ QYSGVSPSGP GVVVMQLNVP NGPQPPQNPS BACU008152/1-1028 SEQYQMPQSP SPCSPPQMPQ QYSGVSPSGP GVVVMQLNVP NGPQPPQNPS 801 850 ENSTTRP00000012412/1-1034 MVQWSHCKYY SMDQRGQKPG DLYSPDSSPQ XXXXXXXXXX XXXXXXXXXX ENSP00000317903/1-976 MVQWSHCKYY SMDQRGQKPG DLYSPDSSPQ ANTQMSSSPV TSPTQSPAPS ENSBTAP00000024431/1-988 MVQWSHCKYY SMDQRGQKPG DLYSPESSPQ ANTQMSSSPV TSPTQSPAPS bmy_03887T0/1-1009 MVQWSHCKYY SMDQRGQKPG DLYSPDSSPQ ANTQMSSSPV TSPAQSPAPS BACU008152/1-1028 MVQWSHCKYY SMDQRGQKPG DLYSPDSSPQ ANTQMSSSPV TSPTQSPAPS 851 900 ENSTTRP00000012412/1-1034 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX DGHYSLLGQP LQYNLSICPP ENSP00000317903/1-976 PVTSLSSVCT GLSPLPVLTQ FPRPGGPAQG DGRYSLLGQP LQYNLSICPP ENSBTAP00000024431/1-988 PVTSLSNVCT GLSPLPVLTQ FPRPGGPAQG DGRYSLLGQP LQYNLSICPP bmy_03887T0/1-1009 PVTSLSNVCT GLSPLPVLTQ FPRPGGPAQG DGHYSLLGQP LQYNLSICPP BACU008152/1-1028 PVTSLSNVCT GLSPLPVLTQ FPRPGGPAQG DGHYSLLGQP LQYNLSICPP 901 950 ENSTTRP00000012412/1-1034 LLHGQSTYTV HQGQSGLKHG NRSKRQALKS ASTDLGTTDV VLGRVLEVTD ENSP00000317903/1-976 LLHGQSTYTV HQGQSGLKHG NRGKRQALKS ASTDLGTADV VLGRVLEVTD ENSBTAP00000024431/1-988 LLHGQSAYSV HQGQSGLKHG NRSKRQALKS ASTDLGTTDV VLGRVLEVTD bmy_03887T0/1-1009 LLHGQSTYTV HQGQSGLKHG NRSKRQALKS ASTDLGTTDV VLGRVLEVTD BACU008152/1-1028 LLHGQSTYTV HQGQSGLKHG NRSKRQALKS ASTDLGTTDV VLGRVLEVTD 951 1000 ENSTTRP00000012412/1-1034 LPEGITRTEA DKLFTQLAMS GAKIQWLKDA QGLPGGGVGD NGGTAENGRH ENSP00000317903/1-976 LPEGITRTEA DKLFTQLAMS GAKIQWLKDA QGLPGGGGGD NSGTAENGRH ENSBTAP00000024431/1-988 LPEGITRTEA DKLFTQLAMS GAKIQWLKDA QGLPGGGGGD NGGTAENGRH bmy_03887T0/1-1009 LPEGITRTEA DKLFTQLAMS GAKIQWLKDA QGLPGGGGGD NGGTAENGRH BACU008152/1-1028 LPEGITRTEA DKLFTQLAMS GAKIQWLKDA QGLPGGGGGD NGGTAENGRH 1001 1050 ENSTTRP00000012412/1-1034 SDLAAFYTIV AVFPSPLAAQ NASLRLNNSV SRFKLRVTKK NYDLRILERA ENSP00000317903/1-976 SDLAALYTIV AVFPSPLAAQ NASLRLNNSV SRFKLRMAKK NYDLRILERA ENSBTAP00000024431/1-988 SDLAALYTIV AVFPSPLAAQ NASLRLNNSV SRFKLRVAKK NYDLRILERA bmy_03887T0/1-1009 SDLAALYTIV AVFPSPLAAQ NASLRLNNSV SRFKLRVAKK NYDLRILERA BACU008152/1-1028 SDLAALYTIV AVFPSPLAAQ NASLRLNNSV SRFKLRVAKK NYDLRILERA 1051 1100 ENSTTRP00000012412/1-1034 SSQ ENSP00000317903/1-976 SSQ ENSBTAP00000024431/1-988 SSQ bmy_03887T0/1-1009 SSQ BACU008152/1-1028 SSQ