KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:12 2014 Check: 00 .. Name: ENSP00000005286/1-1024 Len: 1073 Check: 8162 Weight: 1.00 Name: ENSBTAP00000024433/1-1030 Len: 1073 Check: 1460 Weight: 1.00 Name: ENSTTRP00000011851/1-988 Len: 1073 Check: 396 Weight: 1.00 Name: bmy_16544T0/1-1050 Len: 1073 Check: 3629 Weight: 1.00 Name: BACU005410/1-1003 Len: 1073 Check: 328 Weight: 1.00 // 1 50 ENSP00000005286/1-1024 --MCARMAGR TTAAPRGPYG PWLC------ ------LLVA LALDVVRVDC ENSBTAP00000024433/1-1030 --MCAWMAGR TAAAPRGPRG PWLC------ ------LLVA FALDIVRVDC ENSTTRP00000011851/1-988 --MNVWMAGS VAAAPRGPCG PWLC------ ------LLVA LVLDVVRVDC bmy_16544T0/1-1050 --MNVWMAGR GTAAPRGPCG PWLC------ ------LLVA LALDVVRVEC BACU005410/1-1003 MPSQVWPRTQ GLRKGLYFYK AHLITIFYYI DPVLGGLYPT NALVSEAVEC 51 100 ENSP00000005286/1-1024 GQAPLDPVYL PAALELLDAP EHFRVQQVGH YPPANSSLSS RSETFLLLQP ENSBTAP00000024433/1-1030 DQDPLDPVYL PAALGLLDAP EHFRVQQVGR YPPANSSLGS RSETFLLLQP ENSTTRP00000011851/1-988 DQDPLDPVYL PAALELLDAP EHFRVQQVGH YPPANSSLGS RSETFLLLQP bmy_16544T0/1-1050 DQDPLDPVYL PAALELLDAP EHFRVQQVGR YPPANSSLGS RSETFLLLQP BACU005410/1-1003 DQDPLDPVYL PAALELLDAP EHFRVQQVGR YPPANSSLGS RSETFLLLQP 101 150 ENSP00000005286/1-1024 WPRAQPLLRA SYPPFATQQV VPPRVTEPHQ RPVPWDVRAV SVEAAVTPAE ENSBTAP00000024433/1-1030 WPRAQPLLRA SYPPFATQQV VPPRVTEPHQ RPVPWDVRAV SVEAAVTPAE ENSTTRP00000011851/1-988 WPRAQPLLRA SYPPFATQQV VPPRVTEPHQ RPVPWDVRAV SVEAAVTPAE bmy_16544T0/1-1050 WPRAQPLLRA SYPPFATQQV VPPRVTEPHQ RPVPWDVRAV SVEVAVTPAE BACU005410/1-1003 WPRAQPLLRA SYPPFATQQV VPPRVTEPHQ RPVPWDVRAV SVEVAVTPAE 151 200 ENSP00000005286/1-1024 PYARVLFHLK GQDWPPGSGS LPCARLHATH PAGTAHQACR FQPSLGACVV ENSBTAP00000024433/1-1030 PHARVLFHLR GQDWPPGPGS LPCARLHATH PAGTAHRACR FQPSLGACVV ENSTTRP00000011851/1-988 PHARVLFHLK GQDWPPGPGS LPCARLHATH PAGTAHQACR FQPSLGACVV bmy_16544T0/1-1050 PHARVLFHLK GQDWPPGPGS LPCARLHATH PAGTAHQACR FQPSLGACVV BACU005410/1-1003 PHARVLFHLK GQDWPPGPGS LPCARLHATH PAGTAHQACR FQPSLGACVV 201 250 ENSP00000005286/1-1024 ELELPSHWFS QASTTRAELA YTLEPAAEGP GGCGSGEEND PGEQALPVGG ENSBTAP00000024433/1-1030 ELEFPSHWFS QGSATRAELA YTLEPAAEGP GGCGPGGEED PGEQALPVGS ENSTTRP00000011851/1-988 ELEFPSHWFS QGSATRAELS YTLEPAAEGP GGCGPGREED PGEQALPVGD bmy_16544T0/1-1050 ELEFPSHWFS PGSATRAELA YTLEPAAEGP GGCGPGGEED PGEQALPVGD BACU005410/1-1003 EMEFPSHWFS QGSATRAELA YTLEPAAEGP GGCGPGGEED PGEQALPVGD 251 300 ENSP00000005286/1-1024 VELRPADPPQ YQEVPLDEAV TLRVPDMPVR PGQLFSATLL LRHNFTASLL ENSBTAP00000024433/1-1030 VELRPADPPQ HQEVPLDEAV TLRVPDVPVR PGQLFSATLL LRHNFTAGVL ENSTTRP00000011851/1-988 VELRPADPPQ YQEVPLDEAV TLRVPDMPVR PGQLFSATLL LQHNFTASVL bmy_16544T0/1-1050 VELRPADPPQ YQEVPLDEAV TLRVPDMPVR PGQLFSAALL LQHNFTASVL BACU005410/1-1003 VELRPADPPQ YQEVPLDEAV TLRVPDMPVR PGQLFSAALL LQHNFTASVL 301 350 ENSP00000005286/1-1024 TLRIKVKKGL HVTAARPAQP TLWTAKLDRF KGSRHHTTLI TCHRAGLTEP ENSBTAP00000024433/1-1030 TLRIKVKKGL HVMAARLAQP TLWTTKLERF KGSKHHTTLI TCHRVGPVEP ENSTTRP00000011851/1-988 TLRIKVKKGL YVTAARPAQP ALWTAKLDRF KGSKHHTTLI TCHHDRPAGP bmy_16544T0/1-1050 TLRIKVKKGL HVTAARPAQP ALWTAKLDRF KGSKHHTTLI TCHRDRPAGP BACU005410/1-1003 TLRIKVKKGL HVKAARPAQP ALWTAKLDRF KGSKHHTTLI TCHRDRPAGP 351 400 ENSP00000005286/1-1024 DSSSPLELSE FLWVDFVVEN STGGGVAVTR PVTWQLEYPG QAPEAEKDKM ENSBTAP00000024433/1-1030 N-SSPLELSE FLWVDFLVEN GTSGGVAVTR PVTWQLEYPG QAPEAEKDKM ENSTTRP00000011851/1-988 DSSSPLELSE FLWVDFLVEN GTSGGVAVTR PVTWQLEYPG QAPEAEKDKM bmy_16544T0/1-1050 D-SSPLELSE FLWVDFLVEN GTSGGVAVTR PVTWQLEYPG QAPEAEKDKM BACU005410/1-1003 DSSSPLELSE FLWVDFLVEN GTSGGVAVTR PVTWQLEYPG QAPEAEKDKM 401 450 ENSP00000005286/1-1024 VWEILVSERD IRALIPLAK- ---------- ---------- -------AEE ENSBTAP00000024433/1-1030 VWEILVSEQD IRALVPLAK- ---------- ---------- -------AEE ENSTTRP00000011851/1-988 VWEILVSERD IRALVPLAK- ---------- ---------- -------AEE bmy_16544T0/1-1050 VWEILVSERD IRALVPLAKV RGPQLFPDRL GAKGGEELGA ELLLHPQAEE BACU005410/1-1003 VWEILVSERD IRALVPLAK- ---------- ---------- -------AEE 451 500 ENSP00000005286/1-1024 LVNTAPLTGV PQHVPVRLVT VDGGGALVEV TEHVGCESAN TQVLQVSEAC ENSBTAP00000024433/1-1030 LVNTAPLTGV PRRIPVRLVT VDSGGALVEV TEHIGCESAN TQVLQVSEAC ENSTTRP00000011851/1-988 LVNTAPLTGV PRHVPVRLVT VDSGGALVEV TEHIGCESAN TQVLQVSEAC bmy_16544T0/1-1050 LVNTAPLTGV PRHVPVRLVT VDSGGALVEV TEHIGCESAN TQVLQVSEAC BACU005410/1-1003 LVNTAPLTGV PRHVPVRLVT VDSGGALVEV TEHIGCESAN TQVLQVSEAC 501 550 ENSP00000005286/1-1024 DAVFVAGKES RGARGVRVDF WWRRLRASLR LTVWAPLLPL RIELTDTTLE ENSBTAP00000024433/1-1030 DAVFVSGKES RGALGVRVDF WWRRLRASLR MTVWAPLLPL RIEVTDTTLE ENSTTRP00000011851/1-988 DTVFVAGKES RGARGVRVDF WWRRLRASLR LTVWAPLLPL HIELTDTTLE bmy_16544T0/1-1050 DAVFVAGKES RGAQGVQVDF WWRRLRASLR LTVWAPLLPL RIELTDTTLE BACU005410/1-1003 DAVFVAGKES RGAQGVQVDF WWRRLRASLR LTVWAPLLPL RIELTDTTLE 551 600 ENSP00000005286/1-1024 QVRGWRVPGP AEGPAEPAAE ASDEAERRAR GCHLQYQRAG VRFLAPFAAH ENSBTAP00000024433/1-1030 QVRGWRVPGP AEGAREPEAA GVEEAERRAR GCRLQYQRAG VRFLVPFAAH ENSTTRP00000011851/1-988 QVRGWRVPGP AEGVLEPEAA GAEEAERRVR GCRLQYQRAG VRFLVPFAAH bmy_16544T0/1-1050 QVRGWRVPGP AEGVLEPEAA GAEEAERRVR GCRLQYQRAG VRFLVPFAAH BACU005410/1-1003 ---------- ---------- ---------- ----QYQRAG VRFLVPFAAH 601 650 ENSP00000005286/1-1024 PLDGGRRLTH LLGPDWLLDV SHLVAPHARV LDSRVASLEG GRVVVGREPG ENSBTAP00000024433/1-1030 PLDGGRRLTH LLGPDWLLDV SHLVAPHARV QDPRVASLEG GRVLVGREPG ENSTTRP00000011851/1-988 PLDGGRRLTH LLGPDWLLDV SHLVAPHARV QDPSVASLDG GRVLVGREPG bmy_16544T0/1-1050 PLDGGRRLTH LLGPDWLLDV SHLVAPHARV QDPSVASLEG GRVLVGREPG BACU005410/1-1003 PLDGGHRLTH LLGPDWLLDV SHLVAPHARV QDPSVASLEG GRVLVGREPG 651 700 ENSP00000005286/1-1024 VTSIEVRSPL SDSILGEQAL AVTDDKVSVL ELRVQPVMGI SLTLSRGTAH ENSBTAP00000024433/1-1030 VTSIEVRSPL SDSILGEQAL AVTDDKVSVL ELRVQPVMGI SLALSRGTAH ENSTTRP00000011851/1-988 VTSIEVRSPL SDSILGEQVL AVTDDKVSVL ELRVQPVMGI SLALSRGTAH bmy_16544T0/1-1050 VTSIEVRSPL SDSILGEQVL AVTDDKVSVL ELRVQPVMGI SLALSQSTAH BACU005410/1-1003 VTSIEVRSPL SDSILGEQVL AVTDDKVSVL ELRVQPVMGI SLALSRGTAH 701 750 ENSP00000005286/1-1024 PGEVTATCWA QSALPAPKQE VALSLWLSFS DHTVAPAELY DRRDLGLSVS ENSBTAP00000024433/1-1030 PGEVTATCWA QSALPAPKQE VALSLWLSFS DHTLAPAELY DHHDLGLSVS ENSTTRP00000011851/1-988 PGEVTATCWA QSALPAPKQE VALSLWLSFS DHTLAPAELY NHRDLGLSVS bmy_16544T0/1-1050 TGEVTATCWA QSALPAPKQE VALSLWLSFS DHTLAPAELY NHRDLGLSVS BACU005410/1-1003 PGEVTATCWA QSALPAPKQE VALSLWLSFS DHTLAPAELY NHRDLGLSVS 751 800 ENSP00000005286/1-1024 AEEPGAILPA EEQGAQLGVV VSGAGAEGLP LHVALHPPEP CRRGRHRVPL ENSBTAP00000024433/1-1030 AEEPGAVLPA EEQGAQLRVV VSGAGTEGLP LHVALHPPEP CRRGRHRVPL ENSTTRP00000011851/1-988 AEEPGAVLPA YERGAQLGVV VSGARVKGLP LHVALHPPEP CRRGRHRVPL bmy_16544T0/1-1050 AEEPGAVLPA YERGAQLGVV VSGAGVKGLP LHVALHPPEP CRRGRHRVPL BACU005410/1-1003 AEEPGAVLPA YERGAQLGVV VSGAGVKGLP LHVALQPPEP CRRGRHRVPL 801 850 ENSP00000005286/1-1024 ASGTAWLGLP PASTPAPALP SSPAW-SPPA TEATMGGKRQ VAGSVGGNTG ENSBTAP00000024433/1-1030 ASGTAWLGLP PAPTSAPALP SSPARSSSPA PGASVGGGRW AAGSMGGSGD ENSTTRP00000011851/1-988 ASGTAWLGLS PAPTPAPALP SSPAQ-SSAA PEASVGGERR AAGSVGGGGD bmy_16544T0/1-1050 ASGTAWLGLS PAPTPAPALP SSPAQ-SSPA PEASVGGERR AAGSVGGSGD BACU005410/1-1003 ASGTAWLGLS PAPTPAPALP SSPAQ-SSPA PEASVGGERR AAGSVGGSGD 851 900 ENSP00000005286/1-1024 VRGKFERAEE EARKEETEAR EEEEEE-EEE MVPAPQHVTE LELGMYALLG ENSBTAP00000024433/1-1030 VRGKFEQTEE EARKEEAEAR EEEEEEGEEE MVPAPQRVTD LELGMYALLG ENSTTRP00000011851/1-988 VRRKFEQAAE EAGKEKAEAR EEAEE--DEE MVPAPQRVTE LELGMYALLG bmy_16544T0/1-1050 VRHKFDQAEE EAXKEKAEAR EEEEE--EEE MVPAPQRVTE LELGMYALLG BACU005410/1-1003 VRHKFEQAEE EAGKEKAEAR EEEEE--EEE MVPAPQRVTE LELGMYALLG 901 950 ENSP00000005286/1-1024 VFCVAIFIFL VNGVVFVLRY QRKEPPDSAT DPTSPQPHNW VWLGTDQEEL ENSBTAP00000024433/1-1030 IFCLAILIFL VNGVVFVLRY QRKEPPDGAT DPASPQPHNW VWLGTDQEEL ENSTTRP00000011851/1-988 IFCLAILIFL VNGVVFMLRY QRKEPPDSAA APAAPQPHNW VWLGTDQEDL bmy_16544T0/1-1050 IFCLAILIFL VNGVVFMLRY QRKEPPDGAA DPASPQPHNW VWLGTDQEDL BACU005410/1-1003 IFCLAILIFL VNGVVFMLRY QRKEPPDGAA DPASPQPHNW VWLGTDQEDL 951 1000 ENSP00000005286/1-1024 SRQLDRQSPG PPKGEGSCPC ESGGGGEAPT LAPG-----P PGGTTSSSST ENSBTAP00000024433/1-1030 SRQLDRQSPG PPKGEGGCPC ESGGGGEALT LAQAQAQAPP TGATTSSSGT ENSTTRP00000011851/1-988 SRQLDRQSPG LPKGEGGCLC ESGGGGEALT LAQA-----S AGGTPSSSST bmy_16544T0/1-1050 SRQLDRQSPG LPKGEGGCPC ESGGGREALT LAQA-----P AGGTTSSSST BACU005410/1-1003 SRQLDRQSPG LPKGEGGCPC ESGGGEEALT LAQA-----P AGGTTSSSST 1001 1050 ENSP00000005286/1-1024 LARKEAGGRR KRVEFVTFAP APPAQSPEEP VGAPAVQSIL VAGEEDIRWV ENSBTAP00000024433/1-1030 LARKEAGGRR KRVEFVTFAP APPAQLPEEP VGAPAVQSIL VAGEEDIRWV ENSTTRP00000011851/1-988 LAR-EAGGRR KRVQFVTFAL APPAQLPEEP GGAPAVQSI- ---------- bmy_16544T0/1-1050 LARKEAGGRR KRVEFVTFAP APPAQLPEEP VGAPAVQSIL VAGEEDIRWV BACU005410/1-1003 LARKEAGGRR KRVEFVTFAP APPAQLPEEP AGAPAVQSIL VAGEEDIRWV 1051 1100 ENSP00000005286/1-1024 CEDMGLKDPE ELRNYMERIR GSS ENSBTAP00000024433/1-1030 CEDMGLKDPE ELRSYMERIR GSS ENSTTRP00000011851/1-988 ---------- ---------- --- bmy_16544T0/1-1050 CEDMGLKDPE ELRSYMERIR GSS BACU005410/1-1003 CEDMGLKDPE ELRSYMERIR GSS