KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:13 2014 Check: 00 .. Name: ENSP00000440689/1-493 Len: 509 Check: 759 Weight: 1.00 Name: ENSBTAP00000024437/1-495 Len: 509 Check: 2376 Weight: 1.00 Name: ENSTTRP00000015024/1-494 Len: 509 Check: 6636 Weight: 1.00 Name: bmy_20718T0/1-509 Len: 509 Check: 388 Weight: 1.00 Name: BACU004805/1-495 Len: 509 Check: 790 Weight: 1.00 // 1 50 ENSP00000440689/1-493 MSALGVTVAL LVWAAFLLLV SMWRQVHSSW NLPPGPFPLP IIGNLFQLEL ENSBTAP00000024437/1-495 MAALGITVAL LVWMATLLFI SIWKHIYSSW KLPPGPFPLP IIGNLLQLDI ENSTTRP00000015024/1-494 MAALGIVVAL LVWMATLLLI SIWKHIYSSW QLPPGPFPLP IVGNIFQLEF bmy_20718T0/1-509 MAALDIMVAL LVWMATLLLI SIWTHIYSNR QLPPGPFPLP IVGNIFQLEI BACU004805/1-495 MAALGIMVAL LVWMATLLLI SIWTHIYSNR RLPPGPFPLP FVGNIFQLEI 51 100 ENSP00000440689/1-493 KNIPKSFTRL AQRFGPVFTL YVGSQRMVVM HGYKAVKEAL LDYKDEFSGR ENSBTAP00000024437/1-495 KNIPKSFTRL AERYGPVFTL YLGSQRAVVV HGYKPVKEVL LDYKNEFSGR ENSTTRP00000015024/1-494 KDIPKSFTRL AERFGPVFTL YLGSRRFVVL HGYKAVKEVL LDYRNEFSGR bmy_20718T0/1-509 KNIPKSFTRL AERFGPVFTL YLGSRRFVVL HGYKAVKEVL LDYRNEFSGR BACU004805/1-495 KNIPKSFTRL AERFGPVFTL YLGSRRFVVL HGYKAVKEVL LDYRNEFSGR 101 150 ENSP00000440689/1-493 GDLPAFHAHR DRGIIFNNGP TWKDIRRFSL TTLRNYGMGK QGNESRIQRE ENSBTAP00000024437/1-495 GENPGFQMHK NNGIIFNNGS TWRDTRRFSL TTLRDLGMGK QGNEQRIQRE ENSTTRP00000015024/1-494 GEIPAFRVHQ DKGIIFNNGP TWQDTRRFSL TTLRDFGMGK QGNEQRIQRE bmy_20718T0/1-509 GETPAFQVHQ DKGIIFNNGP TWQDTRRFSL TTLRDFGMGK QGNEQRIQRE BACU004805/1-495 GETPAFQVHQ DKGIIFNNGP TWQDTRRFSL TTLRDFGMGK QGNEQRIQSE 151 200 ENSP00000440689/1-493 AHFLLEALRK TQGQPFDPTF LIGCAPCNVI ADILFRKHFD YNDEKFLRLM ENSBTAP00000024437/1-495 AHFLLEVLRK TQGQPFDPTF VVGFAPYNVI SDILFHKRFD YKDQTSLRLM ENSTTRP00000015024/1-494 AQLLLGALWK THGQPFDPTF VIGFAPYNVI SDILFHRRAD YNDRTALRML bmy_20718T0/1-509 AQLLLGALRK THGQPFDPTF VIGFAPYNVI SDILFHKRVD YNDKTALRML BACU004805/1-495 AQLLLGALRK THGQPFDPTF VIGFAPYNVI SDILFHKRAD YNDKTALRML 201 250 ENSP00000440689/1-493 YLFNENFHLL STPWLQLYNN FPSFLHYLPG SHRKVIKNVA EVKEYVSERV ENSBTAP00000024437/1-495 SLFNENFYLL SSPWIQLYNN FSDYLQYLPG SHRKLLKNVS EVKSYALERV ENSTTRP00000015024/1-494 SLFNENFYLL STPWIQLYNN FSGCIRYLPG SHRKLMKNVS EIKEYALEGV bmy_20718T0/1-509 SLFNENFYLL SSPWIQLYNN FPGYIRYLPG SHRKLIKNVS EIKEYAVEGV BACU004805/1-495 SLFNENFYLL SSPWIQLYNN FPGYIRYLPG SHRKLIKNVS EIKEYALEGV 251 300 ENSP00000440689/1-493 KEHHQSLDPN CPRDLTDCLL VEMEKEKHSA ERLYTMDGIT VTVADLFFAG ENSBTAP00000024437/1-495 KDHQKSLEPS CPRGFLDTML IEMAKERHSV DPMYTLENIA VTVADLLFAG ENSTTRP00000015024/1-494 KDHQRSLEAS CPRDFTDTML LEMEKEKHST DPVYTLDNIA VTVADLLFAG bmy_20718T0/1-509 KDHQKSLEPS CPRDFTDTML MEMEKEKHSA DPVYTLDNIA VTVADLLFAG BACU004805/1-495 KDHQKSLEPS CPRDFTDTML MEMEKEKHST DPVYTLDNIA VTVADLLFAG 301 350 ENSP00000440689/1-493 TETTSTTLRY GLLILMKYPE IEEKLHEEID RVIGPSRIPA IKDRQEMPYM ENSBTAP00000024437/1-495 TETTSTTLRY GLLILMKYPE VEEKLHEEID RVIGPSRIPA VKDRLDMPYL ENSTTRP00000015024/1-494 TETTSTTLRY GLLILMKYPE VEEKLHEEID RVIGPSRIPA IKDRLDMPYL bmy_20718T0/1-509 TETTSTTLRY GLLILMKYPE VEEKLHEEID RVIGPSRIPA IKDRLDMPYL BACU004805/1-495 TETTNTTLRY GLLILMKHPE VEEKLHEEID RVIGPSRIPA VKDRLDMPYL 351 400 ENSP00000440689/1-493 DAVVHEIQRF ITLVPSNLPH EATRDTIFRG YLIPK----- ---------G ENSBTAP00000024437/1-495 DAVVHEIQRF IDLLPSNLLH EATQDTVFRG YVIPK----- ---------G ENSTTRP00000015024/1-494 DAVVHEIQRF IDLIPSNLFH EATRDTVFRG YVIPK----- ---------G bmy_20718T0/1-509 DAVVHEIQRF IDIIPSNLSH KATRDTVFRG YVIPKANNFP GWEHTILSNG BACU004805/1-495 DAVVHEIQRF IDIIPSNLSH KATRDTVFRG YVIPK----- ---------G 401 450 ENSP00000440689/1-493 TVVVPTLDSV LYDNQEFPDP EKFKPEHFLN ENGKFKYSDY FKPFSTGKRV ENSBTAP00000024437/1-495 TVVIPTLDSV LHDRQEFPEP EKFKPEHFLN ENGKFKYSDH FKAFSAGKRV ENSTTRP00000015024/1-494 TVIIPTLDSL LYDSQEFPEP EKFKPEHFLN ENGKFKYSDH FKPFSAGKRV bmy_20718T0/1-509 TVIIPTLDSL LYDSQEFPEP EKFKPEHFLN ENGKFKYSDH FKPFSAGKRV BACU004805/1-495 TVIIPTLDSL LYDSQEFPEP EKFKPEHFLN ENGKFKYSDH FKPFSAGKRA 451 500 ENSP00000440689/1-493 CAGEGLARME LFLLLCAILQ HFNLKPLVDP KDIDLSPIHI GFGCIPPRYK ENSBTAP00000024437/1-495 CVGEGLARME LFLLLAAILQ HFNLKSLVDP KDIDLSPIAI GFGKIPPRYK ENSTTRP00000015024/1-494 CVGEGLARME LFLFLASILQ HFNLKSPVDP MDIDLSPIAV GFAKVPPHYR bmy_20718T0/1-509 CVGEGLARME LFLFLASILQ HFNLKSPVDP KDIDLSPIAI GFAKVPPHYK BACU004805/1-495 CVGEGLARME LFLFLASILQ HFNLKSLGDP KDIDLSPIAI GFAKVPPHYK 501 550 ENSP00000440689/1-493 LCVIPRS-- ENSBTAP00000024437/1-495 LCLIPRSKV ENSTTRP00000015024/1-494 LCVIPRSQ- bmy_20718T0/1-509 LCVIPRSQV BACU004805/1-495 LCVIPRSQV