KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:23:15 2014 Check: 00 ..
Name: ENSTTRP00000007432/1-398 Len: 399 Check: 1671 Weight: 1.00
Name: bmy_05040T0/1-365 Len: 399 Check: 3149 Weight: 1.00
Name: ENSP00000385746/1-366 Len: 399 Check: 2544 Weight: 1.00
Name: BACU005513/1-331 Len: 399 Check: 7480 Weight: 1.00
Name: ENSBTAP00000024458/1-349 Len: 399 Check: 1062 Weight: 1.00
//
1 50
ENSTTRP00000007432/1-398 PRRRTPRRPQ PDTPRGPPVS GRSPRHGPGP RLTMAAARHS TLDFMLGTKX
bmy_05040T0/1-365 ---------- ---------- ---------- ---MAAARYS TLDFTLSAKA
ENSP00000385746/1-366 ---------- ---------- ---------- ---MAAARHS TLDFMLGAKA
BACU005513/1-331 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000024458/1-349 ---------- ---------- ---------- ---------- ---------A
51 100
ENSTTRP00000007432/1-398 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX FANLRIYPHG
bmy_05040T0/1-365 DGETILKGLQ SIFQERGMTE SVHTWQDHGY LATYINKNGS FANLRIYPHG
ENSP00000385746/1-366 DGETILKGLQ SIFQEQGMAE SVHTWQDHGY LATYTNKNGS FANLRIYPHG
BACU005513/1-331 ---------- -------MTE SVHTWQDHGY LATYINKNGS FANLRIYPHG
ENSBTAP00000024458/1-349 DGETILKGLQ SIFQEQGMTE SVHTWQDHGY LATYINKNGS FANLRIYPHG
101 150
ENSTTRP00000007432/1-398 LVLLDLQSYD GDAQGK-EVD SLLNKVEERM KELSQDSTER VKRLPPIVRG
bmy_05040T0/1-365 LVLLDLQSYD XDAQGK-EVD SLLNKVEERM KELSQDSTEQ VKRLPPTVRG
ENSP00000385746/1-366 LVLLDLQSYD GDAQGKEEID SILNKVEERM KELSQDSTGR VKRLPPIVRG
BACU005513/1-331 LVLLDLQSYD GDAQGK-EVD SLLNKVEERM KELSQDSTER VKRLPPIVRG
ENSBTAP00000024458/1-349 LVLLDLQSYD GDAQGK-EVD SLLNKVEERM KELSQDSTER VKRLPPIVRG
151 200
ENSTTRP00000007432/1-398 GAIDRYWPTA DGRLVEYDID EVVYDEDSPY QNIKILHSKQ FGNILILSGD
bmy_05040T0/1-365 GAIDRYWPTA DGRLVEYDID EVVYDEDSPY QNIKILHSKQ FGNILILSGD
ENSP00000385746/1-366 GAIDRYWPTA DGRLVEYDID EVVYDEDSPY QNIKILHSKQ FGNILILSGD
BACU005513/1-331 GAIDRYWPTA DGRLVEYDID EVVYDEDSPY QNIKILHSKQ FGNILILSGD
ENSBTAP00000024458/1-349 GAIDRYWPTA DGRLVEYDID KVVYDEDSPY QNIKILHSKQ FGNILILSGD
201 250
ENSTTRP00000007432/1-398 VNLAESDLAY TRAIMGSGKE DYTGKDVLIL GGGDGGILCE IVKLKPKMVT
bmy_05040T0/1-365 VNLAESDLAY TRAIMGSSKE DYTGKDVLIL GGRDGGILCE IVKLKPKMVT
ENSP00000385746/1-366 VNLAESDLAY TRAIMGSGKE DYTGKDVLIL GGGDGGILCE IVKLKPKMVT
BACU005513/1-331 VNLAESDLAY TRAIMGSGKE DYTGKDVLIL GGGDGGILCE IVKLKPKMVT
ENSBTAP00000024458/1-349 VNLAESDLAY TRAIMGSGKE DYSGKDVLIL GGGDGGILCE IVKLKPKMVT
251 300
ENSTTRP00000007432/1-398 MVEIDQMVID GCKKYMRKTC GDVLDNLKGD CYQVLIEDCI PVLKRYAKEG
bmy_05040T0/1-365 MVEIDQMVID GCKKYMRKTC GDVLDNLKGD CYQVLIEDCI PVLKRYAKEG
ENSP00000385746/1-366 MVEIDQMVID GCKKYMRKTC GDVLDNLKGD CYQVLIEDCI PVLKRYAKEG
BACU005513/1-331 MVEIDQMVID GCKKYMRKTC GDVLDNLKGD CYQVLIEDCI PVLKRYAKEG
ENSBTAP00000024458/1-349 MVEIDQMVID GCKKYMRKTC GDVLDNLKGD CYQVLIEDCI PVLKRYAKEG
301 350
ENSTTRP00000007432/1-398 REFDYVINDL TAVPISTSPE EDSTWEFLRL ILDLSMKVLK QDGKYFTQGN
bmy_05040T0/1-365 REFDYVINDL TAVPISTSPE EDSTWEFLRL ILDLSMKVLK QDGKYFTQRN
ENSP00000385746/1-366 REFDYVINDL TAVPISTSPE EDSTWEFLRL ILDLSMKVLK QDGKYFTQGN
BACU005513/1-331 REFDYVINDL TAVPISTSPE EDSTWEFLRL ILDLSMKVLK QDGKYFTQGN
ENSBTAP00000024458/1-349 REFDYVINDL TAVPISTSPE EDSTWEFLRL ILDLSMKVLK QDGKYFTQGN
351 400
ENSTTRP00000007432/1-398 CVNLTEALSL YEEQLGHLYC PVEFSKEIVC VPSYLELWVF YTVWKKAKP
bmy_05040T0/1-365 CVNLTEALSL YEEQLGRLYC PVEFSKEIVC VPSYLELWVF YTVWKKAKP
ENSP00000385746/1-366 CVNLTEALSL YEEQLGRLYC PVEFSKEIVC VPSYLELWVF YTVWKKAKP
BACU005513/1-331 CVNLTEALSL YEEQLGHLYC PVEFSKEIVC VPSYLELWVF YTVWKKAKP
ENSBTAP00000024458/1-349 CVNLTEALSL YEEQLGRLYC PVEFSKEIVC VPSYLELWVF YTVWKKAKP