KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:23:20 2014 Check: 00 ..
Name: ENSP00000350402/1-414 Len: 448 Check: 6396 Weight: 1.00
Name: ENSBTAP00000024479/1-365 Len: 448 Check: 1034 Weight: 1.00
Name: ENSTTRP00000011512/1-401 Len: 448 Check: 2787 Weight: 1.00
Name: bmy_20590T0/1-333 Len: 448 Check: 8061 Weight: 1.00
Name: BACU012308/1-446 Len: 448 Check: 1392 Weight: 1.00
//
1 50
ENSP00000350402/1-414 ---------- ---------- ----MKAQTA LSFFLILITS LSGSQGIFPL
ENSBTAP00000024479/1-365 ---------- ---------- ----MKAQAV LAFFFTLIPS LCGPQGKIPY
ENSTTRP00000011512/1-401 ---------- ---------- ----MKAQA- -SFFFILIPS LCGSQDTFFL
bmy_20590T0/1-333 ---------- ---------- ---------- MTSWKSKIPD I---------
BACU012308/1-446 MKNDQLEKQD PRYVNRTSLF HDLHMKAQAA LSVFFILIPS VCLFQDMVFL
51 100
ENSP00000350402/1-414 AFFIYVPMNE QIVIGRLDED IILPSSFERG SEVVIHWKYQ DSYKVHSYYK
ENSBTAP00000024479/1-365 ASFSHVSMNE QIVTGRLGED VILPCSFESG PNVVIHWKNQ DTN-VYSYYR
ENSTTRP00000011512/1-401 ASIGHIPMSE QIVIGRLDED VILPCSFESG PDVVVHWKNQ DNY-VYSYYK
bmy_20590T0/1-333 ----HVSMSE QIVIGRLDED VILPCSFESG PDVVVHWXNQ XNY-VYSYYK
BACU012308/1-446 ASLSHVSMSE QTVIGRLDED VILPCSFESG SDVVIHWKNQ GNY-VYSYYK
101 150
ENSP00000350402/1-414 GSDHLESQDP RYANRTSLFY NEIQNGNASL FFRRVSLLDE GIYTCYVGTA
ENSBTAP00000024479/1-365 DSDQLEKQDP RYVNRISLFH GEIHNGNASL SFRRLTLQDE GIYVCYVGTS
ENSTTRP00000011512/1-401 NSDQLKKQDP RYVNRTSLFL DEIHNGNASL SFKRLKLQDE GTYICYVGTS
bmy_20590T0/1-333 DSDQLEKQDP RYVNRTSLFH GEIHNGNASL SFKRLKLQDE GIYICYVGTS
BACU012308/1-446 DSDQLEKQDP RYVNRTSLFH GEIHNGNASL SFKRLKFQDE GIYMCYVGTS
151 200
ENSP00000350402/1-414 IQVITNKVVL KVGVFLTPVM KYEKRNTNSF LICSVLSVYP RPIITWKMD-
ENSBTAP00000024479/1-365 LGKITKKIVL KVGAFVTPVM KYEKNTTNSF LICNVLSVFP YPIITWKVDN
ENSTTRP00000011512/1-401 LGKIINKVVL KVGAFVTPVM KYEKNTTNSF LICNVLSVYP YPIITWEVD-
bmy_20590T0/1-333 PGKXINKVVL KVGAFVTPVM KYEKNATNSF LICNVLSVYP YPIITWKVD-
BACU012308/1-446 SGKIINNVVL KVGAFVTPVM KYEKNAINSF LICNVLSVYP YPIITWKVD-
201 250
ENSP00000350402/1-414 NTPISENNME ETGSLDSFSI NSPLNITGSN SSYECTIENS LLKQTWTGRW
ENSBTAP00000024479/1-365 NTSISENNGK EVGSLGPFHI NSRVNITGSN SSYQCEIENP LLKQTWTGRW
ENSTTRP00000011512/1-401 NTPISENNKE EIGSLGPFYI NSRVNITGSN SSYQCAIENT LLKQTWTGRW
bmy_20590T0/1-333 NTPISENNKE EVGSLGPFYI NSRVNITGSN SSYQCTIENT LLKQTWTGRW
BACU012308/1-446 NTPISENNKE EVGSLGPFYI NSRVNITGSN SSYQCAIENT LLKQTWTGRW
251 300
ENSP00000350402/1-414 TMKDGLHKMQ SEHVSLSCQP VNDYFSPNQD FKVTWSRMKS GTFSVLAYYL
ENSBTAP00000024479/1-365 TRKDVLHKMQ SENVLLSCKP ENSFFPPNQD FTVTWYRVES GSALLLAYFK
ENSTTRP00000011512/1-401 TMKDGLRKNE RENVSLSCKP ENSFFLPNED FRVTWSRVDS GNSLVLAHFL
bmy_20590T0/1-333 TMKDGLRKMQ SENVSLSCKP ENSFFLPNQD FIVIWSRVDS GNSLVLAYFL
BACU012308/1-446 TMKDGLRKMQ SENVSLSCKP ENSFFLPNQD FIVIWSRVDS GNSLVLASFL
301 350
ENSP00000350402/1-414 SSSQNTIINE SRFSWNKELI NQSDFSMNLM DLNLSDSGEY LCNISSDEYT
ENSBTAP00000024479/1-365 NSSQETLINQ PRLSWKEELI NSRDFSLTVK DLHLSDSGEY LCDISSNEST
ENSTTRP00000011512/1-401 NSSQETIINE PLLSRNKILI NLHDFSLTLK DLRLSDSGEY LCNISSSKYT
bmy_20590T0/1-333 NSSQETIIIE PLLSRNKELI NLHDFSLTLK DLRLSDSGEY LCNISSSKYT
BACU012308/1-446 NSSQETIINE ALLSRNKEPI NLHDFSLTLK DLRLSDSGEY LCNISSSKYT
351 400
ENSP00000350402/1-414 LLTIHTVHVE PSQ------- --ETASHNKG LWILVPSAIL AAFLLIWSVK
ENSBTAP00000024479/1-365 LLTSQTLHVE PHE------- --SLALKNKR VWVWGEKAVQ AWLCLIWLI-
ENSTTRP00000011512/1-401 LLTIQTLYVX XXX------- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_20590T0/1-333 LLTIQTLHVG FQG------- ---------- -----FRNEE GTYMFCYSVG
BACU012308/1-446 LLTIQTLHVE ASQGTVVGII VSTLVVVAVL LLSGVTLAVK SRRCICFCTA
401 450
ENSP00000350402/1-414 CCRAQLEARR SRHPADGAQQ ERCCVPPGER CPSAPDNGEE NVPLSGKV
ENSBTAP00000024479/1-365 ---------- ---------- ---------- ---------- --------
ENSTTRP00000011512/1-401 XXXXQLETRG QRSPAGRTHP EV----PPDQ RPSHDGNEDE NV------
bmy_20590T0/1-333 ---------- ---------- ---------- ---------- --------
BACU012308/1-446 SVLYKQGLVI LHEPEKQNIS VFCEIPVTFV SATHTKNETQ CFPDESRA