KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:20 2014 Check: 00 .. Name: ENSP00000350402/1-414 Len: 448 Check: 6396 Weight: 1.00 Name: ENSBTAP00000024479/1-365 Len: 448 Check: 1034 Weight: 1.00 Name: ENSTTRP00000011512/1-401 Len: 448 Check: 2787 Weight: 1.00 Name: bmy_20590T0/1-333 Len: 448 Check: 8061 Weight: 1.00 Name: BACU012308/1-446 Len: 448 Check: 1392 Weight: 1.00 // 1 50 ENSP00000350402/1-414 ---------- ---------- ----MKAQTA LSFFLILITS LSGSQGIFPL ENSBTAP00000024479/1-365 ---------- ---------- ----MKAQAV LAFFFTLIPS LCGPQGKIPY ENSTTRP00000011512/1-401 ---------- ---------- ----MKAQA- -SFFFILIPS LCGSQDTFFL bmy_20590T0/1-333 ---------- ---------- ---------- MTSWKSKIPD I--------- BACU012308/1-446 MKNDQLEKQD PRYVNRTSLF HDLHMKAQAA LSVFFILIPS VCLFQDMVFL 51 100 ENSP00000350402/1-414 AFFIYVPMNE QIVIGRLDED IILPSSFERG SEVVIHWKYQ DSYKVHSYYK ENSBTAP00000024479/1-365 ASFSHVSMNE QIVTGRLGED VILPCSFESG PNVVIHWKNQ DTN-VYSYYR ENSTTRP00000011512/1-401 ASIGHIPMSE QIVIGRLDED VILPCSFESG PDVVVHWKNQ DNY-VYSYYK bmy_20590T0/1-333 ----HVSMSE QIVIGRLDED VILPCSFESG PDVVVHWXNQ XNY-VYSYYK BACU012308/1-446 ASLSHVSMSE QTVIGRLDED VILPCSFESG SDVVIHWKNQ GNY-VYSYYK 101 150 ENSP00000350402/1-414 GSDHLESQDP RYANRTSLFY NEIQNGNASL FFRRVSLLDE GIYTCYVGTA ENSBTAP00000024479/1-365 DSDQLEKQDP RYVNRISLFH GEIHNGNASL SFRRLTLQDE GIYVCYVGTS ENSTTRP00000011512/1-401 NSDQLKKQDP RYVNRTSLFL DEIHNGNASL SFKRLKLQDE GTYICYVGTS bmy_20590T0/1-333 DSDQLEKQDP RYVNRTSLFH GEIHNGNASL SFKRLKLQDE GIYICYVGTS BACU012308/1-446 DSDQLEKQDP RYVNRTSLFH GEIHNGNASL SFKRLKFQDE GIYMCYVGTS 151 200 ENSP00000350402/1-414 IQVITNKVVL KVGVFLTPVM KYEKRNTNSF LICSVLSVYP RPIITWKMD- ENSBTAP00000024479/1-365 LGKITKKIVL KVGAFVTPVM KYEKNTTNSF LICNVLSVFP YPIITWKVDN ENSTTRP00000011512/1-401 LGKIINKVVL KVGAFVTPVM KYEKNTTNSF LICNVLSVYP YPIITWEVD- bmy_20590T0/1-333 PGKXINKVVL KVGAFVTPVM KYEKNATNSF LICNVLSVYP YPIITWKVD- BACU012308/1-446 SGKIINNVVL KVGAFVTPVM KYEKNAINSF LICNVLSVYP YPIITWKVD- 201 250 ENSP00000350402/1-414 NTPISENNME ETGSLDSFSI NSPLNITGSN SSYECTIENS LLKQTWTGRW ENSBTAP00000024479/1-365 NTSISENNGK EVGSLGPFHI NSRVNITGSN SSYQCEIENP LLKQTWTGRW ENSTTRP00000011512/1-401 NTPISENNKE EIGSLGPFYI NSRVNITGSN SSYQCAIENT LLKQTWTGRW bmy_20590T0/1-333 NTPISENNKE EVGSLGPFYI NSRVNITGSN SSYQCTIENT LLKQTWTGRW BACU012308/1-446 NTPISENNKE EVGSLGPFYI NSRVNITGSN SSYQCAIENT LLKQTWTGRW 251 300 ENSP00000350402/1-414 TMKDGLHKMQ SEHVSLSCQP VNDYFSPNQD FKVTWSRMKS GTFSVLAYYL ENSBTAP00000024479/1-365 TRKDVLHKMQ SENVLLSCKP ENSFFPPNQD FTVTWYRVES GSALLLAYFK ENSTTRP00000011512/1-401 TMKDGLRKNE RENVSLSCKP ENSFFLPNED FRVTWSRVDS GNSLVLAHFL bmy_20590T0/1-333 TMKDGLRKMQ SENVSLSCKP ENSFFLPNQD FIVIWSRVDS GNSLVLAYFL BACU012308/1-446 TMKDGLRKMQ SENVSLSCKP ENSFFLPNQD FIVIWSRVDS GNSLVLASFL 301 350 ENSP00000350402/1-414 SSSQNTIINE SRFSWNKELI NQSDFSMNLM DLNLSDSGEY LCNISSDEYT ENSBTAP00000024479/1-365 NSSQETLINQ PRLSWKEELI NSRDFSLTVK DLHLSDSGEY LCDISSNEST ENSTTRP00000011512/1-401 NSSQETIINE PLLSRNKILI NLHDFSLTLK DLRLSDSGEY LCNISSSKYT bmy_20590T0/1-333 NSSQETIIIE PLLSRNKELI NLHDFSLTLK DLRLSDSGEY LCNISSSKYT BACU012308/1-446 NSSQETIINE ALLSRNKEPI NLHDFSLTLK DLRLSDSGEY LCNISSSKYT 351 400 ENSP00000350402/1-414 LLTIHTVHVE PSQ------- --ETASHNKG LWILVPSAIL AAFLLIWSVK ENSBTAP00000024479/1-365 LLTSQTLHVE PHE------- --SLALKNKR VWVWGEKAVQ AWLCLIWLI- ENSTTRP00000011512/1-401 LLTIQTLYVX XXX------- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20590T0/1-333 LLTIQTLHVG FQG------- ---------- -----FRNEE GTYMFCYSVG BACU012308/1-446 LLTIQTLHVE ASQGTVVGII VSTLVVVAVL LLSGVTLAVK SRRCICFCTA 401 450 ENSP00000350402/1-414 CCRAQLEARR SRHPADGAQQ ERCCVPPGER CPSAPDNGEE NVPLSGKV ENSBTAP00000024479/1-365 ---------- ---------- ---------- ---------- -------- ENSTTRP00000011512/1-401 XXXXQLETRG QRSPAGRTHP EV----PPDQ RPSHDGNEDE NV------ bmy_20590T0/1-333 ---------- ---------- ---------- ---------- -------- BACU012308/1-446 SVLYKQGLVI LHEPEKQNIS VFCEIPVTFV SATHTKNETQ CFPDESRA