KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:20 2014 Check: 00 .. Name: ENSBTAP00000024485/1-775 Len: 787 Check: 9252 Weight: 1.00 Name: ENSP00000354543/1-780 Len: 787 Check: 8138 Weight: 1.00 Name: ENSTTRP00000007111/1-661 Len: 787 Check: 498 Weight: 1.00 Name: bmy_14734T0/1-763 Len: 787 Check: 4709 Weight: 1.00 Name: BACU019322/1-452 Len: 787 Check: 6742 Weight: 1.00 // 1 50 ENSBTAP00000024485/1-775 MSKMPAKKKS CFQITSVTTA QVATSITEDT ESLDDPDESR TEDVSSEIFD ENSP00000354543/1-780 MSKMPAKKKS CFQITSVTTA QVATSITEDT ESLDDPDESR TEDVSSEIFD ENSTTRP00000007111/1-661 ---------- ---------- ---------- ---------- ---------- bmy_14734T0/1-763 MSKMPAKKKS CFQITSVTTA QVATSITEDT ESLDDPDESR TEDVSSEIFD BACU019322/1-452 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000024485/1-775 VSRATDYGPE EVCERSSSEE TLNNVGDAET PGTVSPNLLL DGQLAAATAA ENSP00000354543/1-780 VSRATDYGPE EVCERSSSEE TLNNVGDAET PGTVSPNLLL DGQLAAAAAA ENSTTRP00000007111/1-661 ---------- ---------- ---------- ---------- ---------- bmy_14734T0/1-763 VSRATDYGPE EVCERSSSEE TLNNVGDAET PGTVSPNLVL DGQLAAAAAT BACU019322/1-452 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000024485/1-775 PANGGGAISA RSVAGVLAST LSPAATSVPS SGAPGAPPLT GPSATPGTAA ENSP00000354543/1-780 PANGGGVVSA RSVSGALAST LAAAATSAPA PGAPGGPQLA GSSAGPVTAA ENSTTRP00000007111/1-661 --------LA PSVVGALANT LGASAPSAPS SGDPGSPPVA GPSAGPGTAA bmy_14734T0/1-763 PANGGGAASA RSVAGALAST LAAAATSAPS PGAPGAPPVA GPSAGPGTAA BACU019322/1-452 ---------A RSVAGALAST LAAAATSAPS PGAPGPPPVA GPSAGPGTAA 151 200 ENSBTAP00000024485/1-775 SSQPPTICSS RFRVIKLDHG SGEPYRRGRW TCMEYYERDS DSSVLTRSGD ENSP00000354543/1-780 PSQPPTTCSS RFRVIKLDHG SGEPYRRGRW TCMEYYERDS DSSVLTRSGD ENSTTRP00000007111/1-661 PSQPPT-YSS RFRVIKLDHG SGEPYRRGRW TCMEYYERDS DSSVLTRSGD bmy_14734T0/1-763 PSQPPTTCSS RFRVIKLDHG SGEPYRRGRW TCMEYYERDS DSSVLTRSGD BACU019322/1-452 PSQPPTTCSS RFRVIKLDHG SGEPYRRGRW TCMEYYERDS DSSVLTRSGD 201 250 ENSBTAP00000024485/1-775 CIRHSNTFDQ TAERDSGLGA TGGSVVVVVA SVPGAHGPDS GTDSSLTAVS ENSP00000354543/1-780 CIRHSSTFDQ TAERDSGLGA TGGSVVVVVA SMQGAHGPES GTDSSLTAVS ENSTTRP00000007111/1-661 CIRHSNTFDQ TADRDSGLGA TGGSVVVVVA SMPGAHGPDS GTDSSLTAVS bmy_14734T0/1-763 CIRHSNTFDQ TADRDSGLGA TGGSVVVVVA SMPGAHGPDS GTDSSLTAVS BACU019322/1-452 CIRHSNTFDQ TADRDSGLGA TGGSVVVVVA SMPGAHGPDS GTDSSLTAVS 251 300 ENSBTAP00000024485/1-775 QLPQSEKMSQ PAPAPPQSFG VGQPQPPPPP VGGAVAPSSA SLPLFPGAAA ENSP00000354543/1-780 QLPPSEKMSQ PTPAQPQSFS VGQPQPPPPP VGGAVAQSSA PLPPFPGAAT ENSTTRP00000007111/1-661 QLPPSEKMSQ PAPAPPQSFG VGQPQPQPPP VGGAVAPSSA PLPPFPGAAA bmy_14734T0/1-763 QLPPSEKMSQ PAPAPPQSFG VGQPQPQPPP VGGAVAPSSA PLPPFPGAAA BACU019322/1-452 QLPPSEKM-- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000024485/1-775 GPPQRLAAPP PSQAQGAG-- --PPGPNGQG LPLTNVTLAQ PGL------- ENSP00000354543/1-780 GPQPMMAAAQ PSQPQGA--- ----GPGGQT LPPTNVTLAQ PAMSLPPQPG ENSTTRP00000007111/1-661 GPPQMMAAPP PSQPQGA--- ----GPNGQG LPLTNVTLAQ PGLALPPQPG bmy_14734T0/1-763 GPPQMMAAPP PSQPQGAAPG SVPPGPNGQG LPLTNVTLAQ PGLALPPQPG BACU019322/1-452 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000024485/1-775 -AVGAATAPP PQQFAYSQPQ MPPGHLLPVP PAAQSEYLQP HVAGLQPPSP ENSP00000354543/1-780 PAVGAPAAQQ PQQFAYPQPQ IPPGHLLPVQ PSGQSEYLQQ HVAGLQPPSP ENSTTRP00000007111/1-661 PAVGASAAPP PQQFAYPQAQ IPPGHLLPVQ PAGQSEYLQP HVAGLQPPSP bmy_14734T0/1-763 PAVGASAAPP PQQFAYPQAQ IPPGHLLPVQ PAGQSEYLQP HVAGLQPPSP BACU019322/1-452 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000024485/1-775 AQPSSAGAAA GLAAVAGLPA GTGQNAASTG AQVMGAPSLP GEAVAPGPGP ENSP00000354543/1-780 AQPSSTGAAA SPATAATLPV GTGQNASSVG AQLMGASSQP SEAMAPRTGP ENSTTRP00000007111/1-661 AQPSSAGAGA GP-------- --GQNASSTG AQMMAAASLP GEAVAPGPGP bmy_14734T0/1-763 AQPSSAGAGA GPAASAGLPA GPGQNASSTG AQIMGAASLP GEAVAPGPGP BACU019322/1-452 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000024485/1-775 ATGGPAAPGQ QAGVPAAAVG GTAPSGLVPA GVGQPQAAPP PQMSGSGAPS ENSP00000354543/1-780 AQGGQVAPCQ PTGVPPATVG GVVQPCLGPA GAGQPQSVPP PQMGGSGPLS ENSTTRP00000007111/1-661 AQGGPAAPGQ PAGVPPAAVG GAAPSGLVPA GAGQPQPAPP PQMGGSGAPS bmy_14734T0/1-763 AQGGPAAAGQ PAGVPPAAVG GAAQSGLVPA GAGQPQPAPP PQMGGSGTPS BACU019322/1-452 ---------- ---------- ---------- ----PQPAPP PQMGGSGTPS 501 550 ENSBTAP00000024485/1-775 VVPSGPLAVV PGVANVPAAA PAPSVPSVST TSVTMPNVPA PLGQAPQLCS ENSP00000354543/1-780 AVPGGPHAVV PGVPNVPAAV PAPSVPSVST TSVTMPNVPA PLAQSQQLSS ENSTTRP00000007111/1-661 AVPGGPHAVV PGVPNVPAAA PAPSVPSVST TSVTMPNVPA PLAQAQQLGS bmy_14734T0/1-763 AVPGGPHAVV PGVPNVPAAA PAPSVPSVST TSVTMPNVPA PLAQAQQLSS BACU019322/1-452 AVPGGPHAVV PGVPNVPAAA PAPSVPSVST TSVTMPNVPA PLAQAQQLSS 551 600 ENSBTAP00000024485/1-775 QPPVSRSGSS IQHVGLPLVP GTASAPTSLP QSDLSQFQTQ TQPLVGQVDD ENSP00000354543/1-780 HTPVSRSSSI IQHVGLPLAP GTHSAPTSLP QSDLSQFQTQ TQPLVGQVDD ENSTTRP00000007111/1-661 HPPVSRSGSI IQHVGLPLAP GTASAPTSLP QSDLSQFQTQ TQPLVGQVDD bmy_14734T0/1-763 HPPVSRSGSI IQHVGLPLAP GTASAPTSLP QSDLSQFQTQ TQPLVGQVDD BACU019322/1-452 HPPVSRSGSI IQHVGLPLAP GTASAPTSLP QSDLSQFQTQ TQPLVGQVDD 601 650 ENSBTAP00000024485/1-775 TRRKSEPLPQ PPLSLIAENK PVVKPPVADA LANPLQLTPM NSLATSVFSI ENSP00000354543/1-780 TRRKSEPLPQ PPLSLIAENK PVVKPPVADS LANPLQLTPM NSLATSVFSI ENSTTRP00000007111/1-661 TRRKSEPLPQ PPLSLIAEIK PVVKPPVADA LANPLQLTPM NSLSTSVFSI bmy_14734T0/1-763 TRRKSEPLPQ PPLSLIAETK PVVKPPVADA LANPLQLTPM NSLSTSVFSI BACU019322/1-452 TRRKSEPLPQ PPLSLIAETK PVVKPPVADA LANPLQLTPM NSLSTSVFSI 651 700 ENSBTAP00000024485/1-775 AIPVDGDEDR NPSTAFYQAF HLNTVQESKN LWDSASGGGG VAIDNKIEQA ENSP00000354543/1-780 AIPVDGDEDR NPSTAFYQAF HLNTLKESKS LWDSASGGGV VAIDNKIEQA ENSTTRP00000007111/1-661 AIPVDGDEDR NPSTAFFQAF HLNTIQESKN LWDSASGGGG VAIDNKIEQA bmy_14734T0/1-763 AIPVDGDE-- ---------- ---------- --DSASGGGG VAIDNKIEQA BACU019322/1-452 AIPVDGDEDR NPSTAFFQAF HLNTIQESKN LWDSASGGGG VAIDNKIEQA 701 750 ENSBTAP00000024485/1-775 MDLVKSHLMY AVREEVEVLK EQIKELVERN SLLERENALL KSLSNNDQLS ENSP00000354543/1-780 MDLVKSHLMY AVREEVEVLK EQIKELVERN SLLERENALL KSLSSNDQLS ENSTTRP00000007111/1-661 MDLVKSHLMY AVREEVEVLK EQIKELVERN SLLERENALL KSLSNNDQLS bmy_14734T0/1-763 MDLVKSHLMY AVREEVEVLK EQIKELVERN SLLERENALL KSLSNNDQLS BACU019322/1-452 MDLVKSHLMY AVREEVEVLK EQIKELVERN SLLERENALL KSLSNNDQLS 751 800 ENSBTAP00000024485/1-775 QLPAQQANPG STSQQQAVIA QPPQPTQPPQ QPNVSSA ENSP00000354543/1-780 QLPTQQANPG STSQQQAVIA QPPQPTQPPQ QPNVSSA ENSTTRP00000007111/1-661 QLPAQQANAG STSQQQAVIA QPPQPTQPPQ QPNVSSA bmy_14734T0/1-763 QLPAQQANAG STSQQQAVIA QPPQPTQPPQ QPNVSSA BACU019322/1-452 QLPAQQANAG STSQQQAVIA QPPQPTQPPQ QPNVSSA