KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:25 2014 Check: 00 .. Name: bmy_05311T0/1-536 Len: 883 Check: 3620 Weight: 1.00 Name: ENSTTRP00000005248/1-868 Len: 883 Check: 1236 Weight: 1.00 Name: BACU018150/1-864 Len: 883 Check: 8253 Weight: 1.00 Name: ENSP00000352069/1-870 Len: 883 Check: 895 Weight: 1.00 Name: ENSBTAP00000024513/1-870 Len: 883 Check: 9432 Weight: 1.00 // 1 50 bmy_05311T0/1-536 ---------- MLQPF----- ---------- -----PFART LVQV------ ENSTTRP00000005248/1-868 MASASSSRAG VALPFEKSQL ILKVVSAKPK VHSRQPRINS FVEVAVDGLP BACU018150/1-864 ---------- LSCP------ ---VVSAKPK VHSRQPRINS FVEVAVDGLP ENSP00000352069/1-870 MASASSSRAG VALPFEKSQL TLKVVSAKPK VHNRQPRINS YVEVAVDGLP ENSBTAP00000024513/1-870 MASASSSRAG VALPFEKSQL ILKVVSAKPK VHSRQPRINS FVEVAVDGLP 51 100 bmy_05311T0/1-536 ---------- ---------- -------NAH LPPSIW-LHC LKR------- ENSTTRP00000005248/1-868 SETKKTGKRI GSSELLWNEI IILNVTAQSH LDLKVWSCHT LRNELLGTAS BACU018150/1-864 SETKKTGKRI GSSELLWNEI IILNVTAQSH LDLKVWSCHT LRNELLGTAS ENSP00000352069/1-870 SETKKTGKRI GSSELLWNEI IILNVTAQSH LDLKVWSCHT LRNELLGTAS ENSBTAP00000024513/1-870 SETKKTGKRI GSSELLWNEI IILNVTAQSH LDLKVWSCHT LRNELLGTAS 101 150 bmy_05311T0/1-536 VHVSQDFRE- ---------- ---------- ---------- ---------- ENSTTRP00000005248/1-868 VNLSNVLKNN GGKMENTQLT LNLQTENKGG VVSGGELTIF LDGPAVDLGS BACU018150/1-864 VNLSNVLKNN GGKMENTQLT LNLQTENKGG VVSGGELTIF LDGPTVDLGS ENSP00000352069/1-870 VNLSNVLKNN GGKMENMQLT LNLQTENKGS VVSGGELTIF LDGPTVDLGN ENSBTAP00000024513/1-870 INLSSVLKNN GGKMENTQLT LNLQTENKGG VVSGGELTIF LDGPTVDLGS 151 200 bmy_05311T0/1-536 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005248/1-868 VPNGSAVTDX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXTHRHSGGS BACU018150/1-864 VPNGSAVTDG SQPPSRESSG TAVTPENRHQ PPGTNCFGGR SRTHRHSGGS ENSP00000352069/1-870 VPNGSALTDG SQLPSRDSSG TAVAPENRHQ PPSTNCFGGR SRTHRHSGAS ENSBTAP00000024513/1-870 VPNGSAVTDG SQPPSRESSG TAVAPENRHQ PPSTNCFGGR SRTHRHSSGS 201 250 bmy_05311T0/1-536 --------EQ MP-------- ---------- ---------- ---------- ENSTTRP00000005248/1-868 AR--TATGEQ SPGTSSQQHQ PLKNPSHSGL ANGTVNDEPT AATDPEAPSA BACU018150/1-864 ARTATATGEP SPGTSSRQHQ PLKNPSHSGL ANGTVNDEPT AATDPEGPSA ENSP00000352069/1-870 ARTTPATGEQ SPGARSRHRQ PVKNSGHSGL ANGTVNDEPT TATDPEEPSV ENSBTAP00000024513/1-870 ARPATAAGEQ SPGTSSRHHQ PVKNPSHSSL ANGTVNDEPT ATTDPEEPSV 251 300 bmy_05311T0/1-536 -----PKAPP LRVLPLTMTH WAPSL----- -----LAGPH QLMLCC-ALS ENSTTRP00000005248/1-868 VAVVSPPAAA SSAVPNPATA TIPATATPEE GEEPSTSGTQ QLPAAAQAPD BACU018150/1-864 VAVASPPAAA SSAVPNPTTA TLPATATPEE GEEASTSGTQ QLPAAAQAPD ENSP00000352069/1-870 VGVTSPPAAP LSVTPNPNTT SLPAPATPAE GEEPSTSGTQ QLPAAAQAPD ENSBTAP00000024513/1-870 VGVASPPVAV SSVTPNPTTA AIPATATPAE GEEPSTSGTQ QFPAAAQAPD 301 350 bmy_05311T0/1-536 SFPA------ ---------- ---------- ---------- ---------- ENSTTRP00000005248/1-868 ALPAGWEQRE LPNGRVYYVD HNTKTTTWER PLPPGWEKRT DPRGRFYYVD BACU018150/1-864 ALPAGWEQRE LPNGRVYYVD HNTKTTTWER PLPPGWEKRT DPRGRFYYVD ENSP00000352069/1-870 ALPAGWEQRE LPNGRVYYVD HNTKTTTWER PLPPGWEKRT DPRGRFYYVD ENSBTAP00000024513/1-870 ALPAGWEQRE LPNGRVYYVD HNTKTTTWER PLPPGWEKRT DPRGRFYYVD 351 400 bmy_05311T0/1-536 ---------- ---------- -------HLL TSLPRFPVSI LSSTPSGDTQ ENSTTRP00000005248/1-868 HNTRTTTWQR PTAEYVRSYE QWQSQRNQLQ GAMQHFSQRF LYQSSSAPTD BACU018150/1-864 HNTRTTTWQR PTAEYVRNYE QWQSQRNQLQ GAMQHFSQRF LYQPFPFART ENSP00000352069/1-870 HNTRTTTWQR PTAEYVRNYE QWQSQRNQLQ GAMQHFSQRF LYQSSSASTD ENSBTAP00000024513/1-870 HNTRTTTWQR PTAEYVRNYE QWQSQRNQLQ GAMQHFSQRF LYQSSSASTD 401 450 bmy_05311T0/1-536 LEQLQVMEL- EGW------- ---EKKRQDN GRVYYVNHNT RTTQWEDPRT ENSTTRP00000005248/1-868 HDPLG--PLP PGW------- ----EKRQDN GRVYYVNHNT RTTQWEDPRT BACU018150/1-864 RVQLNAHPPP SIWLHCLKRV HVSQEKRQDN GRVYYVNHNT RTTQWEDPRT ENSP00000352069/1-870 HDPLG--PLP PGW------- ----EKRQDN GRVYYVNHNT RTTQWEDPRT ENSBTAP00000024513/1-870 HDPLG--PLP SGW------- ----EKRQDN GRVYYVNHNT RTTQWEDPRT 451 500 bmy_05311T0/1-536 QGMIQEPALP PGWEMKYTSE GVRYFVDHNT RTTTFKDPRP GFESGTKQGS ENSTTRP00000005248/1-868 QGMIQEPALP PGWEMKYTSE GVRYFVDHNT RTTTFKDPRP GFESGTKQGS BACU018150/1-864 QGMIQEPALP PGWEMKYTSE GVRYFVDHNT RTTTFKDPRP GFESGTKQGS ENSP00000352069/1-870 QGMIQEPALP PGWEMKYTSE GVRYFVDHNT RTTTFKDPRP GFESGTKQGS ENSBTAP00000024513/1-870 QGMIQEPALP PGWEMKYTSE GVRYFVDHNT RTTTFKDPRP GFESGTKQGS 501 550 bmy_05311T0/1-536 PGAYDRSFRW KYHQFRFLCH SNALPSHVKI SVSRQTLFED SFQQIMNMKP ENSTTRP00000005248/1-868 PGAYDRSFRW KYHQFRFLCH SNALPSHVKI SVSRQTLFED SFQQIMNMKP BACU018150/1-864 PGAYDRSFRW KYHQFRFLCH SNALPSHVKI SVSRQTLFED SFQQIMNMKP ENSP00000352069/1-870 PGAYDRSFRW KYHQFRFLCH SNALPSHVKI SVSRQTLFED SFQQIMNMKP ENSBTAP00000024513/1-870 PGAYDRSFRW KYHQFRFLCH SNALPSHVKI SVSRQTLFED SFQQIMNMKP 551 600 bmy_05311T0/1-536 YDLRRRLYII MRGEEGLDYG GIAREWFFLL SHEVLNPMYC LFEYAGKNNY ENSTTRP00000005248/1-868 YDLRRRLYII MRGEEGLDYG GIAREWFFLL SHEVLNPMYC LFEYAGKNNY BACU018150/1-864 YDLRRRLYII MRGEEGLDYG GIAREWFFLL SHEVLNPMYC LFEYAGKNNY ENSP00000352069/1-870 YDLRRRLYII MRGEEGLDYG GIAREWFFLL SHEVLNPMYC LFEYAGKNNY ENSBTAP00000024513/1-870 YDLRRRLYII MRGEEGLDYG GIAREWFFLL SHEVLNPMYC LFEYAGKNNY 601 650 bmy_05311T0/1-536 CLQINPASSI NPDHLTYFRF IGRFIAMALY HG-------- ---------- ENSTTRP00000005248/1-868 CLQINPASSI NPDHLTYFRF IGRFIAMALY HGKFIDTGFT LPFYKRMLNK BACU018150/1-864 CLQINPASSI NPDHLTYFRF IGRFIAMALY HGKFIDTGFT LPFYKRMLNK ENSP00000352069/1-870 CLQINPASSI NPDHLTYFRF IGRFIAMALY HGKFIDTGFT LPFYKRMLNK ENSBTAP00000024513/1-870 CLQINPASSI NPDHLTYFRF IGRFIAMALY HGKFIDTGFT LPFYKRMLNK 651 700 bmy_05311T0/1-536 ---------- ---------- -KENNLEECG LELYFIQDME ILGKVTTHEL ENSTTRP00000005248/1-868 RPTLKDLESI DPEFYKSIIW IKENNLEECG LELYFIQDME ILGKVTTHEL BACU018150/1-864 RPTLKDLESI DPEFYKSIIW IKENNLEECG LELYFIQDME ILGKVTTHEL ENSP00000352069/1-870 RPTLKDLESI DPEFYNSIVW IKENNLEECG LELYFIQDME ILGKVTTHEL ENSBTAP00000024513/1-870 RPTLKDLESI DPEFYNSIVW IKENNLEECG LELYFIQDME ILGKVTTHEL 701 750 bmy_05311T0/1-536 KEGGESIRVT EENKEEYIML LTDWRFTRGV EEQTKAFLDG FNEVAPLEWL ENSTTRP00000005248/1-868 KEGGESIRVT EENKEEYIML LTDWRFTRGV EEQTKAFLDG FNEVAPLEWL BACU018150/1-864 KEGGESIRVT EENKEEYIML LTDWRFTRGV EEQTKAFLDG FNEVAPLEWL ENSP00000352069/1-870 KEGGESIRVT EENKEEYIML LTDWRFTRGV EEQTKAFLDG FNEVAPLEWL ENSBTAP00000024513/1-870 KEGGESIRVT EENKEEYIML LTDWRFTRGV EEQTKAFLDG FNEVAPLEWL 751 800 bmy_05311T0/1-536 RYFDEKELEL MLCGMQEIDM SDWQKNTIYR HYTKNSKQIQ WFWQVVKEMD ENSTTRP00000005248/1-868 RYFDEKELEL MLCGMQEIDM SDWQKNTIYR HYTKNSKQIQ WFWQVVKEMD BACU018150/1-864 RYFDEKELEL MLCGMQEIDM SDWQKNTIYR HYTKNSKQIQ WFWQVVKEMD ENSP00000352069/1-870 RYFDEKELEL MLCGMQEIDM SDWQKSTIYR HYTKNSKQIQ WFWQVVKEMD ENSBTAP00000024513/1-870 RYFDEKELEL MLCGMQEIDL SDWQKHTIYR HYTKNSKQIQ WFWQVVKEMD 801 850 bmy_05311T0/1-536 NEKRIRLLQF VTGTCRLPVG GFTELIGSNG PQKFCIDKVG KETWLPRSHT ENSTTRP00000005248/1-868 NEKRIRLLQF VTGTCRLPVG GFTELIGSNG PQKFCIDKVG KETWLPRSHT BACU018150/1-864 NEKRIRLLQF VTGTCRLPVG GFTELIGSNG PQKFCIDKVG KETWLPRSHT ENSP00000352069/1-870 NEKRIRLLQF VTGTCRLPVG GFAELIGSNG PQKFCIDKVG KETWLPRSHT ENSBTAP00000024513/1-870 NEKRIRLLQF VTGTCRLPVG GFTELIGSNG PQKFCIDKVG KETWLPRSHT 851 900 bmy_05311T0/1-536 CFNRLDLPPY KSYEQLKEKL LYAVEETEGF GQE ENSTTRP00000005248/1-868 CFNRLDLPPY KSYEQLKEKL LYAVEETEGF GQE BACU018150/1-864 CFNRLDLPPY KSYEQLKEKL LYAVEETEGF GQE ENSP00000352069/1-870 CFNRLDLPPY KSYEQLREKL LYAIEETEGF GQE ENSBTAP00000024513/1-870 CFNRLDLPPY KSYEQLKEKL LYAVEETEGF GQE