KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:23:27 2014 Check: 00 .. Name: bmy_04355T0/1-455 Len: 864 Check: 6392 Weight: 1.00 Name: ENSP00000257626/1-854 Len: 864 Check: 1676 Weight: 1.00 Name: ENSBTAP00000024520/1-818 Len: 864 Check: 577 Weight: 1.00 Name: ENSTTRP00000000732/1-816 Len: 864 Check: 3050 Weight: 1.00 // 1 50 bmy_04355T0/1-455 ---------- ---------- ---------- ---------M PAAQGPRAAR ENSP00000257626/1-854 MALRLVADFD LGKDVLPWLR AQRAVSEASG AGSGGADVLE NDYESLHVLN ENSBTAP00000024520/1-818 ---------- ---------- ---------- ------GVLE NNYECLRVLN ENSTTRP00000000732/1-816 ---------- ---------- ---------- -------VLE NNYESLRVLN 51 100 bmy_04355T0/1-455 WPRPGNGPPS GLRLRSREGR APVAAGTAGG VSGRWGRRRR PRM------- ENSP00000257626/1-854 VERNGN---- -IIYTYKDDK GNVVFGLYD- ----CQTRQN ELLYTFEKDL ENSBTAP00000024520/1-818 VERNRN---- -IIYTYKDNK GNVFFGLYD- ----YQTKQN EHLYTFEKDL ENSTTRP00000000732/1-816 VERNGN---- -IIYTYKDDK GNVFFGLYD- ----YQTKQN EHLYTFEKDL 101 150 bmy_04355T0/1-455 ------IREM SSLDSTSLVQ AAKEGRRNEL QPGSRCLTLL VEIHPINNVK ENSP00000257626/1-854 QVFSCSVNSE RTLLAASLVQ STKEGKRNEL QPGSKCLTLL VEIHPVNNVK ENSBTAP00000024520/1-818 QVVSCSVNKE KTLLATSLVQ AAKEGRSNEL QPGSKCLTLL VEIHPINNVK ENSTTRP00000000732/1-816 QVVSCSVNRE RTLLAASLVQ AAKEGRRNEL QPGSRCLTLL VEIHPINNVK 151 200 bmy_04355T0/1-455 VLKAVDSYIW VQFLYPHVES HPLPENHLLL ISEEKYIEQL HIQVTREDGN ENSP00000257626/1-854 VLKAVDSYIW VQFLYPHIES HPLPENHLLL ISEEKYIEQF RIHVAQEDGN ENSBTAP00000024520/1-818 VLKAVDSYIW VQFLYPHVES CPQPKNHLLL LSEEKYIEQF HIQVVQEDGN ENSTTRP00000000732/1-816 VLKAVDSYIW VQFLYPHVES HPLPENHLLL ISEEKYIEQL HIQVTQEDGN 201 250 bmy_04355T0/1-455 RVVIKNSGHL PRERVAEDFV WAQWDMSEQR LYYIDLKKSR SVLKCIQFYA ENSP00000257626/1-854 RVVIKNSGHL PRDRIAEDFV WAQWDMSEQR LYYIDLKKSR SILKCIQFYA ENSBTAP00000024520/1-818 RVVIKNSGHL PRERIAEDFV WAQWDMSEQR LYYIDLKKSR SVLKCIQFYA ENSTTRP00000000732/1-816 RVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXKSR SVLKCIQFYA 251 300 bmy_04355T0/1-455 DEHFSLMFEA PLDVSLSDSG FKLVNFGYDD LQDQEKLSKH PTLCVFTNHT ENSP00000257626/1-854 DESYNLMFEV PLDISLSNSG FKLVNFGCDY HQYRDKFSKH LTLCVFTNHT ENSBTAP00000024520/1-818 EEHFNLMFEA PLDISLSDSG FKLVNFGYSD LQDKEELSEH LTLCVFTNHT ENSTTRP00000000732/1-816 DEHFSLMFEA SLDVSLSDSG FKLVNFGYDD LQDQEKLSKH PTLCVFTNHT 301 350 bmy_04355T0/1-455 GSLCVCYCPN FDSWEQITYS VLYFHKGHSK TFTATLGRVD SRVTKGITFL ENSP00000257626/1-854 GSLCVCYSPK CASWGQITYS VFYIHKGHSK TFTTSLENVG SHMTKGITFL ENSBTAP00000024520/1-818 GSLCVCYCPN FDSWEQITYS VFYFHKGHSK TFTTTLGSVD SHVTKGITFL ENSTTRP00000000732/1-816 GSLCVCYCPN FDSWEQITYS VLYFHKGHGK TFTATLGRVD SRVTKGITFL 351 400 bmy_04355T0/1-455 SLDYYVAVYL PGHFFHLLNI QHPDLICHSL FLTGNSEVID MLPHSPLQSL ENSP00000257626/1-854 NLDYYVAVYL PGHFFHLLNV QHPDLICHNL FLTGNNEMID MLPHCPLQSL ENSBTAP00000024520/1-818 NLDYYVAVYL PGHFFHLLNI QHPDLICHSL FLTENSEVID MLPHSPLQSL ENSTTRP00000000732/1-816 SLDYYVAVYL PGHFFHLLNI QHPDLICHSL FLTGNSEVID MLPHSPLQSL 401 450 bmy_04355T0/1-455 SGPLVLDWCS GKLYRALLNQ SYLLEFLWNT RLDCEKLALL HCVLSCGRDP ENSP00000257626/1-854 SGSLVLDCCS GKLYRALLSQ SSLLQLLQNT CLDCEKMAAL HCALYCGQGA ENSBTAP00000024520/1-818 SGSLVLDSRS GKLYRVLLNQ SYLVEFLRSA RLDCERMALL HCALSHGRDP ENSTTRP00000000732/1-816 SGSLVLDWGS GKLYRALLNQ SYLLEFLWNT RLDCEKLALL HCVLSCGRDP 451 500 bmy_04355T0/1-455 RQLEAKIIQW ISENISACHS FDLIQEFIIA SSYWSIYPET SNMDKLLPYS ENSP00000257626/1-854 QFLEAQIIQW ISENVSACHS FDLIQEFIIA SSYWSVYSET SNMDKLLPHS ENSBTAP00000024520/1-818 RRLEAKIIQW ISENISACHS FDLIQEFIIA SSYWSIYPET SNMDKLLPYS ENSTTRP00000000732/1-816 RRLEAKIIQW ISENISACHS FDLIQEFIIA SSYWSIYPET SNMDKLLPYS 501 550 bmy_04355T0/1-455 SLLTWDT--- ---------- ---------- ---------- ---------- ENSP00000257626/1-854 SVLTWNTEIP GITLVTEDIA LPLMKVLSFK GYWEKLNSNL EYVKYAKPHF ENSBTAP00000024520/1-818 SLLTWDTEIP GITLVTEEIP LPLMKVHSFK GYWEKLNSNL EYVKYSKPHL ENSTTRP00000000732/1-816 SLLTWDTEIP GITLVTEEIP LPLMKVHSFK GYWEKLNSNL EYVKYSKPHL 551 600 bmy_04355T0/1-455 ---------- ---------- ---------- ---------- ---------- ENSP00000257626/1-854 HYNNSVVRRE WHNLISEEKT GKRRSAAYVR NILDNAVKVI SNLEARNLGP ENSBTAP00000024520/1-818 HYNNSVVRRE WHNLISEEKT GKRRSTVYVR NILDNAIKVI SNVEAKNLEP ENSTTRP00000000732/1-816 HYNNSVVRRE WHSLISEEKK GKRRSTVYVR NILDNAIKVI XXXXXXXXXP 601 650 bmy_04355T0/1-455 ---------- ---------- ---------- ---------- ---------- ENSP00000257626/1-854 RLTPLLQEED SHQRLLMGLM VSELKDHFLR HLQGVEKKKI EQMVLDYISK ENSBTAP00000024520/1-818 RLTPLFQEED THQQLLIGLM VSELREHLLR HLQGVEKRKI EQMVLDYVSK ENSTTRP00000000732/1-816 RLTPLFQEED NHQRLLMGLM VSELKDHLLR HLQGVEKKKI EQMVLDYVSK 651 700 bmy_04355T0/1-455 ---------- ---------- ---------- ---------- ---------- ENSP00000257626/1-854 LLDLICHIVE TNWRKHNLHS WVLHFNSRGS AAEFAVFHIM TRILEATNSL ENSBTAP00000024520/1-818 LLDLICQILE ASWRKHNLHP WALHFNRQAS AAEFAVFHIM TRILEATNTL ENSTTRP00000000732/1-816 LLDLICQILE ASGRKHNLHP WVLHXXXXXX XXXXXXXXXX XXXXXXXXSL 701 750 bmy_04355T0/1-455 ---------- ---------- ---------- ---------- ---------- ENSP00000257626/1-854 FLPLPPGFHT LHTILGVQCL PLHNLLHCID SGVLLLTETA VIRLMKDLDN ENSBTAP00000024520/1-818 FLPLPPGFHT LHMILGVRCL PLHNLLHYID HGVLLLTEAA VTRLMKDLDN ENSTTRP00000000732/1-816 F-PLPPGFHT LHTILGVHCL PLHNLLHYID NGVLLLTETA VTRLMKDLDN 751 800 bmy_04355T0/1-455 ---------- ---------- ---------- ---------- ---------- ENSP00000257626/1-854 TEKNEKLKFS IIVRLPPLIG QKICRLWDHP MSSNIISRNH VTRLLQNYKK ENSBTAP00000024520/1-818 TEKNEKLKFS IIMRLPPLTG QKICRLWDHP VSSNIISRNH VKRLLQNYNK ENSTTRP00000000732/1-816 TEKNEKVKFS IIVRLPPLTG QKICRLWDHP VSSNIISRNH VKQLLQNYNK 801 850 bmy_04355T0/1-455 ---------- ---------- ---------- ---------- ---------- ENSP00000257626/1-854 QPRNSMINKS SFSVEFLPLN YFIEILTDIE SSNQALYPFE GHDNVDAEFV ENSBTAP00000024520/1-818 QPWSSVMDKS SFSVEFLPLN YFIHILTDIE SSNPALYAFE GHDNVDAKFV ENSTTRP00000000732/1-816 QPRSPMMDKS SFSVEFLPLN YFIEILTDIE SSNPALYAFE GRDNVDAKFV 851 900 bmy_04355T0/1-455 ---------- ---- ENSP00000257626/1-854 EEAALKHTAM LLGL ENSBTAP00000024520/1-818 EEAALKHTAM LLGL ENSTTRP00000000732/1-816 EEAALKHTTM LLGL