KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:30 2014 Check: 00 .. Name: BACU017593/1-270 Len: 1176 Check: 6146 Weight: 1.00 Name: ENSP00000355155/1-1115 Len: 1176 Check: 2723 Weight: 1.00 Name: bmy_12961T0/1-724 Len: 1176 Check: 3348 Weight: 1.00 Name: ENSBTAP00000024549/1-1137 Len: 1176 Check: 3358 Weight: 1.00 Name: ENSTTRP00000000623/1-1111 Len: 1176 Check: 155 Weight: 1.00 // 1 50 BACU017593/1-270 MRRLSLWWLL SRVCLLLPPP CALVLAGVPG SSSHPQPCQI LKRIGHAVRV ENSP00000355155/1-1115 MRRLSLWWLL SRVCLLLPPP CALVLAGVPS SSSHPQPCQI LKRIGHAVRV bmy_12961T0/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024549/1-1137 MRRLSLWWLL SRVCLLLPPP CALVLAGVPG SSSHPQPCQI LKRIGHAVRV ENSTTRP00000000623/1-1111 MRRLSLWWLL SRVCLLLPPP CALVLAGVPG SSSHPQPCQI LKRIGHAVRV 51 100 BACU017593/1-270 GAVHLQPWTT APRTASRAPD GSRTGAQRDE PEPGTWRPPA PSPGARWLGS ENSP00000355155/1-1115 GAVHLQPWTT APRAASRAPD DSRAGAQRDE PEPGTRRSPA PSPGARWLGS bmy_12961T0/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024549/1-1137 GAVHLQPWTT APRAASRTPD GSRTGAPRDE PEPGTWLPPA PSPGARWLGS ENSTTRP00000000623/1-1111 GAVHLQPWTT APRTASRAPD GSRTGAQRDE PEPGTWRPPA PSPGARWLGS 101 150 BACU017593/1-270 ALEGRGPPGA RKPGEDDRAE TLWPRDALLF AVDNLNRVEG LLPYNLSLEV ENSP00000355155/1-1115 TLHGRGPPGS RKPGEGARAE ALWPRDALLF AVDNLNRVEG LLPYNLSLEV bmy_12961T0/1-724 ---------- ---------- --------MF GV-------- -------LEV ENSBTAP00000024549/1-1137 ALHGRGPPGA RKPGEGARAE TLWPRDALLF AVDNLNRVEG LLPYNLSLEV ENSTTRP00000000623/1-1111 ALYGRGPPGA RKPGEGDRAE TLWPRDALLF AVDNLNRVEG LLPYNLSLEV 151 200 BACU017593/1-270 VMAIEAGLGD LPLLPFSSPS SPWSSDPFSF LQSVCHTVVV QGVSALLAFP ENSP00000355155/1-1115 VMAIEAGLGD LPLLPFSSPS SPWSSDPFSF LQSVCHTVVV QGVSALLAFP bmy_12961T0/1-724 KFEI------ ---------- ---------- ----C----- ---------P ENSBTAP00000024549/1-1137 VMAIEAGLGD LPLLPFSSPS SPWSSDPFSF LQSVCHTVVV QGVSALLAFP ENSTTRP00000000623/1-1111 VMAIEAGLGD LPLLPFSSPS SPWSSDPFSF LQSVCHTVVV QGVSALLAFP 201 250 BACU017593/1-270 QGLGEMMELD LVSSVLHIPV ISIVRHEFPR ESQ------- ---------- ENSP00000355155/1-1115 QSQGEMMELD LVSLVLHIPV ISIVRHEFPR ESQNPLHLQL SLENSLSSDA bmy_12961T0/1-724 MGDSEVM--- ---------- -------VQK NDTNPLHLQL SLENSLSSDA ENSBTAP00000024549/1-1137 QSLGEMMELD LVSSVLHIPV ISIVRYEFPR ESQNPLHLQL SLENSLSSDA ENSTTRP00000000623/1-1111 QGLGEMMELD LVSSVLHIPV ISIVRHEFPR ESQNPLHLQL SLENSLSSDA 251 300 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 DVTVSILTMN NWYNFSLLLC QEDWNITDFL LLTQNNSKFH LGSIINITAN bmy_12961T0/1-724 DVTVSILTMN NWYNFSLLLC QEDWNITNFL VLTQNNSKFH LGSIINITIN ENSBTAP00000024549/1-1137 DVTVSILTMN NWYNFSLLLC QEDWNITDFL LLTQNNSKFH LGSIINITIN ENSTTRP00000000623/1-1111 DVTVSILTMN NWYNFSLLLC QEDWNITDFL VLTQNNSKFH LGSIINITIN 301 350 BACU017593/1-270 ---------- ---------- ---------- -------IFS V--------- ENSP00000355155/1-1115 LPSTQDLLSF LQIQLESIKN STPTVVMFGC DMESIRRIFE ITTQFGVMPP bmy_12961T0/1-724 LSSTEDLLSF LQVQLESVKN STPTMVMFGC DMESIRRIFE ITTQFGVAPP ENSBTAP00000024549/1-1137 LSSTEDLLSF LQVQLESIKN STPTMVMFGC DMESIRRIFE ITTQFGVMLP ENSTTRP00000000623/1-1111 LSSTEDLLSF LQVQLESVKN STPTMVMFGC DMESIRRIFE ITTQFGVAAP 351 400 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 ELRWVLGDSQ NVEELRTEGL PLGLIAHGKT TQSVFEHYVQ DAMELVARAV bmy_12961T0/1-724 ELRWVLGDSQ NVEQLRTEGL PLGLIAHGKT TQSVFEYYVQ DAMELVARAV ENSBTAP00000024549/1-1137 ELRWVLGDSQ NVEKLRTEGL PLGLIAHGKT TQSVFEYYVQ DAMELVARAV ENSTTRP00000000623/1-1111 ELHWVLGDSQ NVEQLRTEGL PLGLIAHGKT TQSVFEYYVQ DAMELVARAV 401 450 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 ATATMIQPEL ALIPSTMNCM EVETTNLTSG QYLS------ ---------- bmy_12961T0/1-724 ATATMIQPEL ALIPSTMNCM DVETANLTSG QYLSRLADNL CPCGYFHMII ENSBTAP00000024549/1-1137 ATATMIQPEL ALIPSTVNCM DVETANLTSG QYLS------ ---------- ENSTTRP00000000623/1-1111 ATATMIQPEL ALIPSTMNCM DVETANLTSG QYLS------ ---------- 451 500 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 ---------- ---------- ---RFLANTT FRGLSGSIRV KGSTIVSSEN bmy_12961T0/1-724 PQTSKVVKEE CEVWSLEAIH SVYRFLANTT FRGLSGSIKV KGSTIISSEN ENSBTAP00000024549/1-1137 ---------- ---------- ---RFLANTT FRGLSGSIKV KGSTIISSEN ENSTTRP00000000623/1-1111 ---------- ---------- ---RFLANTT FRGLSGSIKV KGSTIISSEN 501 550 BACU017593/1-270 ---------- ---------- --WDGGR--- -----REQWG KDKQGVSQPP ENSP00000355155/1-1115 NFFIWNLQHD PMGKPMWTRL GSWQGGKIVM DYGIWPEQAQ RHKTHFQHPS bmy_12961T0/1-724 NFFIWNLQHD PLGKPMWTRL GSWQQGKIIM DYGIWPEQAQ RHKTHFQHPS ENSBTAP00000024549/1-1137 NFFIWNLQND PMGKPMWTRL GSWQRGKIVM DYGIWPEQAQ RHKTHFQHPS ENSTTRP00000000623/1-1111 NFFIWNLQHD PLGKPMWTRL GSWQQGKIIM DYGIWPEQAQ RHKTHFQHPS 551 600 BACU017593/1-270 SLNL------ ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 KLHLRVVTLI EHPFVFTREV DDEGLCPAGQ LCLDPMTNDS STLDSLFSSL bmy_12961T0/1-724 KLHLRVVTLI EHPFVFTREV DDEGLCPAGQ LCLDPMTNDS SILDSLFSSL ENSBTAP00000024549/1-1137 KLNLRVVTLI EHPFVFTREV DDEGLCPAGQ LCLDPMTNDS AMLDSLFSSL ENSTTRP00000000623/1-1111 KLHLRVVTLI EHPFVFTREV DDEGLCPAGQ LCLDPMTNDS SILDSLFSSL 601 650 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 HSSNDTVPIK FKKCCYGYCI DLLEKIAEDM NFDFDLYIVG DGKYGAWKNG bmy_12961T0/1-724 HSSNDTVPIK FKKCCYGYCI DLLEKLAEDM NFDFDLYIVG DGKYGAWKNG ENSBTAP00000024549/1-1137 HSSNDTVPIK LKKCCYGYCI DLLEKLAEDM NFDFDLYIVG DGKYGAWKNG ENSTTRP00000000623/1-1111 HSSNDTVPIK FKKCCYGYCI DLLEKLAEDM NFDFDLYIVG DGKYGAWKNG 651 700 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 HWTGLVGDLL RGTAHMAVTS FSINTARSQV IDFTSPFFST SLGILVRTRD bmy_12961T0/1-724 HWTGLVGELL SGSAHMAVTS FSINTARSQV IDFTSPFFST SLGILVRTRD ENSBTAP00000024549/1-1137 HWTGLVGDLL SGSAHLAVTS FSINTARSQV IDFTSPFFST SLGILVRTRD ENSTTRP00000000623/1-1111 HWTGLVGELL SGSAHMAVTS FSINTARSQV IDFTSPFFST SLGILVRTRD 701 750 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 TAAPIGAFMW PLHWTMWLGI FVALHITAVF LTLYEWKSPF GLTPKGRNRS bmy_12961T0/1-724 TAAPIGAFMW PLHWTMWLGI FVALHITAIF LTLYEWKSPF GMTPKGRNRS ENSBTAP00000024549/1-1137 TAAPIGAFMW PLHWTMWLGI FVALHITAIF LTLYEWKSPF GMTPKGRNRS ENSTTRP00000000623/1-1111 TAAPI-AFMW PLHWMCW-GI FVALHITAIF LTLYEWKSPF GMT-KGRNRS 751 800 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 KVFSFSSALN ICYALLFGRT VAIKPPKCWT GRFLMNLWAI FCMFCLSTYT bmy_12961T0/1-724 KVFSFSSALN VCYALLFGRT AAIKPPKCWT GRFLMNLWAI FCMFCLSTYT ENSBTAP00000024549/1-1137 KVFSFSSALN VCYALLFGRT AAIKPPKCWT GRFLMNLWAI FCMFCLSTYT ENSTTRP00000000623/1-1111 KVF-FSSALN VCYALLFGRT AAIKPPKCWT GRFLMNLWAI FCMFCLSTYT 801 850 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 ANLAAVMVGE KIYEELSGIH DPKLHHPSQG FRFGTVRESS AEDYVRQSFP bmy_12961T0/1-724 ANLAAVMVGE KIYEELSGIH DPKLHHPSQG FRFGTVRESS AEDYVRQSFP ENSBTAP00000024549/1-1137 ANLAAVMVGE KIYEELSGIH DPKLHHPSQG FRFGTVRESS AEDYVRQSFP ENSTTRP00000000623/1-1111 ANLAAVMVGE KIYEELSGIH DPKLHHPSQG FRFGTVRESS AEDYVRQSFP 851 900 BACU017593/1-270 ---------- ---TPQ---- ---------- -------LDF QIS------- ENSP00000355155/1-1115 EMHEYMRRYN VPATPDGVEY LKNDPEKLDA FIMDKALLDY EVSIDADCKL bmy_12961T0/1-724 EMHEYMRRYN VPDTPDGVEY LKNDPEKLDA FIMDKALLDY EVSVDADCKL ENSBTAP00000024549/1-1137 EMHEYMRRYN VPATLDGVAY LKNDPEKLDA FIMDKALLDY EVSVDADCKL ENSTTRP00000000623/1-1111 EMHEYMRRYN VPATPDGVEY LKNDPEKLDA FIMDKALLDY EVSVDADCKL 901 950 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 LTVGKPFAIE GYGIGLPPNS PLTANISELI SQYKSHGFMD MLHDKWYRVV bmy_12961T0/1-724 LTVGKPFAME ---------- ---------- ---------- -------DVI ENSBTAP00000024549/1-1137 LTVGKPFAIE GYGIGLPPNS PFTSNISELI SQYKSHGFMD VLHDKWYKVV ENSTTRP00000000623/1-1111 LTVGKPFAME GYGIGLPPNS PLTSNISELI SQYKSHGFMD VLHEKWYKVV 951 1000 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 PCGKRSFAVT ETLQMGIKHF SGLFVLLCIG FGLSILTTIG EHIVYRLLLP bmy_12961T0/1-724 P--------- --LKPIITLY DTIIVFL--- ---------- ---------- ENSBTAP00000024549/1-1137 PCGKRSFAVT ETLQMGIKHF SGLFMLLCIG FGLSILTTIG EHMVYRLLLP ENSTTRP00000000623/1-1111 PCGKRSFAVT ETLQMGIKHF SGLFVLLCVG FGLSILTTIG EHIVYRLLLP 1001 1050 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 RIKNKSKLQY WLHTSQRLHR AINTSFIEEK QQHFKTKRVE K--------- bmy_12961T0/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024549/1-1137 RIKNKSRLQY WLHTSQRLHR ALNTSFVEEK QQRFKTKRVE KRDCWSPLLC ENSTTRP00000000623/1-1111 RIKNKSRLQY WLHTSQRLHR ALNTSFVEEK RQRFKTKRVE K--------- 1051 1100 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 ---------- ---RSNVGPR QLTVWNTSNL SHDNRRKYIF SDEEGQNQLG bmy_12961T0/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024549/1-1137 NLHGACQNHF RFPRSSVGPR HLTVWNTSNL SHDNRRKYIF NDEGGPNQLG ENSTTRP00000000623/1-1111 ---------- ---RSNVGPC QLTVWNTSNL SHDNRRKYIF SDEGGQNQLS 1101 1150 BACU017593/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000355155/1-1115 IRIHQDIPLP PRRRELPALR TTNGKADSLN VSRNSVMQEL SELEKQIQVI bmy_12961T0/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024549/1-1137 VRTHQDIPLP PRRRELPASL TTNGKADSHS GARNSVIQEL SELERQIQVI ENSTTRP00000000623/1-1111 LRTHQDIPLP PRRRELPASL TTNGKADSLN GARNSVMQEL SELEKQIQVI 1151 1200 BACU017593/1-270 ---------- ---------- ------ ENSP00000355155/1-1115 RQELQLAVSR KTELEEYQRT SRTCES bmy_12961T0/1-724 ---------- ---------- --SC-- ENSBTAP00000024549/1-1137 RQELQLAVSR KTELEEYQRT NRTCEP ENSTTRP00000000623/1-1111 QQELQLAVSR KTELEEYQRT NRTCEP