KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:23:30 2014  Check: 00 ..

 Name: ENSP00000394842/1-217     Len:    224  Check:  2662  Weight:  1.00
 Name: ENSBTAP00000024550/1-201  Len:    224  Check:  138  Weight:  1.00
 Name: bmy_06225T0/1-216         Len:    224  Check:  7666  Weight:  1.00
 Name: ENSTTRP00000005664/1-180  Len:    224  Check:  839  Weight:  1.00
 Name: BACU019092/1-180          Len:    224  Check:  9826  Weight:  1.00

//


                          1                                                   50
ENSP00000394842/1-217     MAYPGYGGGF GNFSIQVPGM QMGQPVPETG PAILLDGYSG -PAYSDTYSS 
ENSBTAP00000024550/1-201  MAYPGYGGGF GNFGN----- ---------- PLGQPG-YPG HPAYPGSIST 
bmy_06225T0/1-216         MAYPGYGGGF GNFSNQ---M QMGQPVPGTG PAVLPGGYPA CPAYPDSYSS 
ENSTTRP00000005664/1-180  ---------- ---------- ---------- PAVLPGGYPA YPAYPDSYSS 
BACU019092/1-180          ---------- ---------- ---------- PAVLPGGYPA CPAYPDSYSS 


                          51                                                 100
ENSP00000394842/1-217     AGDSVYTYFS AVAGQDGEVD AEELQRCLTQ SGINGTYSPF SLETCRIMIA 
ENSBTAP00000024550/1-201  -GDPMWKCFL AIAGQDGEVD AEELQKCLTQ SGISGTYSPF SLETCRIMIA 
bmy_06225T0/1-216         AGDSMWTYFT AVADQDGEVD AEELQKCLTQ SGISGTFSPF SLETCRIMIA 
ENSTTRP00000005664/1-180  AGDPMWTYFT AVADQDGEVD AEELQKCLTQ SGISGTFSPF SLETCRIMIA 
BACU019092/1-180          AGDPMWTYFT AVADQDGEVD AEELQKCLTQ SGISGTFSPF SLETCRIMIA 


                          101                                                150
ENSP00000394842/1-217     MLDRDHTGKM GFNAFKELWA ALNAWKENFM TVDQDGSGTV EHHELRQAIG 
ENSBTAP00000024550/1-201  MLDRDYSGKM GFNEFKELWA ALNSWKQNFI TVDKDGSGSV EHHELNQAIA 
bmy_06225T0/1-216         MLDRDYTGKM GFNEFKELWA ALNAWKQNFI TVDKDGSGAV EHHELNQAIA 
ENSTTRP00000005664/1-180  MLDRDYTGKM GFNEFKELWA ALNAWK-NFI TVDKDGSGTV ERHEFXXXXX 
BACU019092/1-180          MLDRDYTGKM GFNEYKELWA ALNAWKQNFI TVDKDGSGTV EHHELKQAIA 


                          151                                                200
ENSP00000394842/1-217     LMG-YRLSPQ TLTTIVKRYS KNGRIFFDDY VACCVKLRAL TDFFRKRDHL 
ENSBTAP00000024550/1-201  AMG-YRLSPQ TVTTIVKRYS KNGRIFFDDY VACCVKLRAL TDFFRRRDHL 
bmy_06225T0/1-216         AMG-YRLSPQ TLTAIVKRYS KNGRIFFDDY VACCVKLRAL TGM----DHL 
ENSTTRP00000005664/1-180  XXXXYRLSPQ TLTTIVKRYS KNGRIFFDDY VACCVKLRAL TDFFRRRDHL 
BACU019092/1-180          AMG-YRLSPQ TLTAIVKRYS KNGRIFFDDY VACCVKLRAL TDFFRRRDHL 


                          201                                                250
ENSP00000394842/1-217     -----QQGSA NFIYDDFLQG TMAI 
ENSBTAP00000024550/1-201  -----QQGVV SFVYDDFLQG TMAV 
bmy_06225T0/1-216         WVEGKKHYVS AFNYLEGEQL LYCC 
ENSTTRP00000005664/1-180  -----RQGVV SFIYDD---- ---- 
BACU019092/1-180          -----QQGVV SFIYDD---- ----