KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:35 2014 Check: 00 .. Name: ENSTTRP00000006873/1-1163 Len: 1272 Check: 1613 Weight: 1.00 Name: ENSP00000274181/1-1224 Len: 1272 Check: 5551 Weight: 1.00 Name: ENSBTAP00000024569/1-1072 Len: 1272 Check: 8986 Weight: 1.00 Name: bmy_15890T0/1-766 Len: 1272 Check: 389 Weight: 1.00 Name: BACU014719/1-763 Len: 1272 Check: 854 Weight: 1.00 // 1 50 ENSTTRP00000006873/1-1163 ---------- ---------- ---------- ---------- ---------- ENSP00000274181/1-1224 MKPRARGWRG LAALWMLLAQ VAEQAPACAM GPAAAAPGSP SVPRPPPPAE ENSBTAP00000024569/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_15890T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU014719/1-763 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006873/1-1163 ---------Y DLVSPYEVDH NGDYVSHEIM HPQRRKRALA QLGADSLHLR ENSP00000274181/1-1224 RPGWMEKGEY DLVSAYEVDH RGDYVSHEIM HHQRRRRAVP VSEVESLHLR ENSBTAP00000024569/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_15890T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU014719/1-763 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006873/1-1163 LKGFRQDFHL DLKTSSKLVA PGFLVQTLGK GGTKSVQTFP PEDFCFYQGS ENSP00000274181/1-1224 LKGSRHDFHM DLRTSSSLVA PGFIVQTLGK TGTKSVQTLP PEDFCFYQGS ENSBTAP00000024569/1-1072 ---------- ---------- ---------- ---------- ---------- bmy_15890T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU014719/1-763 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000006873/1-1163 LRSHKNSSVA LSTCQGLSGM IRTQEADYFL KPLPSHLAGG PKDSAGGGPP ENSP00000274181/1-1224 LRSHRNSSVA LSTCQGLSGM IRTEEADYFL RPLPSHLSWK LGRAAQGSSP ENSBTAP00000024569/1-1072 -------SVC VCVCVFSSGM IRTQEADYFL KPLPSHLAGS PSDSTGGRPP bmy_15890T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU014719/1-763 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000006873/1-1163 SHILYKRSTE PRDPGSHQVA MMERNWRLA- -------HQP PRGGSSLRHP ENSP00000274181/1-1224 SHVLYKRSTE PHAPGASEVL VTSRTWELA- HQPLHSSDL- -RLGL----P ENSBTAP00000024569/1-1072 SHILYKRSTE APAVGPHRVA MMEKKWGLEN HHLFHHEDQS PR-GFSFRHP bmy_15890T0/1-766 ---------- ---------- MMERNWRPEN RHLLHHEDQP PRGGFSLRRP BACU014719/1-763 ---------- ---------- MMERNWRPEN RQLLHHEDQP PRGGFSLRHP 251 300 ENSTTRP00000006873/1-1163 QKLHFCGRRK KYMPKPPKED LFILPDEYKS CIRHKRSLLK SHRNEELNVE ENSP00000274181/1-1224 QKQHFCGRRK KYMPQPPKED LFILPDEYKS CLRHKRSLLR SHRNEELNVE ENSBTAP00000024569/1-1072 QKQHFCGRRK KYMPKPPKED LFILPDEYKS CVRQKRSLLK SHRNEELNVE bmy_15890T0/1-766 QKLHFCGRRK KYMPKPPKED LFILPDEYKS CIRHKRSLLK SHRNEELNVE BACU014719/1-763 QKLHFCGRRK KYMPKPPKED LFILPDEYKP CIRHKRSLLK SHRNEELNVE 301 350 ENSTTRP00000006873/1-1163 TLVVVDKKMM QNHGHENITT YVLTILNMVS ALFKDGTIGG NINIAIVGLI ENSP00000274181/1-1224 TLVVVDKKMM QNHGHENITT YVLTILNMVS ALFKDGTIGG NINIAIVGLI ENSBTAP00000024569/1-1072 TLVVVDKKMM QNHGHENITT YVLTVLNMVS ALFKDGTIGG NINIAIVALI bmy_15890T0/1-766 TLVVVDKKMM QNHGHENITT YVLTILNMVS ALFKDGTIGG NINIAIVGLI BACU014719/1-763 TLVVVDKKMM QNHGHENITT YVLTILNMVS ALFKDGTIGG NINIAIVGLI 351 400 ENSTTRP00000006873/1-1163 LLEEEQPGLV ISHHADHTLS SFCQWQSGLM GKDGTRHDHA ILLTGLDICS ENSP00000274181/1-1224 LLEDEQPGLV ISHHADHTLS SFCQWQSGLM GKDGTRHDHA ILLTGLDICS ENSBTAP00000024569/1-1072 LLEEEQPGLV ISHHADHSLS SFCQWQSGLT GKDGARHDHA ILLTGLDICS bmy_15890T0/1-766 LLEEEQPGLV ISHHADHTLS SFCQWQSGLM GKDGTRHDHA ILLTGLDICS BACU014719/1-763 LLEEEQPGLV ISHHADHTLS SFCQWQSGLM GKDGTRHDHA ILLTGLDICS 401 450 ENSTTRP00000006873/1-1163 WKNEPCDTLG FAPISGMCSK YRSCTINEDT GLGLAFTIAH ESGHNFGMVH ENSP00000274181/1-1224 WKNEPCDTLG FAPISGMCSK YRSCTINEDT GLGLAFTIAH ESGHNFGMIH ENSBTAP00000024569/1-1072 WKNEPCDTLG FAPISGMCSK YRSCTINEDT GLGLAFTIAH ESGHNFGMVH bmy_15890T0/1-766 WKNEPCDTLG FAPISGMCSK YRSCTINEDT GLGLAFTIAH ESGHNFGMVH BACU014719/1-763 WKNEPCDTLG FAPISGMCSK YRSCTINEDT GLGLAFTIAH ESGHNFGMVH 451 500 ENSTTRP00000006873/1-1163 DGEGNVCKKS EGNIMSPTLA GRNGVFSWSP CSRQYLHKFL -TAQATCLAD ENSP00000274181/1-1224 DGEGNMCKKS EGNIMSPTLA GRNGVFSWSP CSRQYLHKFL STAQAICLAD ENSBTAP00000024569/1-1072 DGEGNVCKKS EGNIMSPTLA GRNGVFSWSP CSRQYLHRFL STAQATCLAD bmy_15890T0/1-766 DGEGNVCKKS EGNIMSPTLA GRNGVFSWSP CSRQYLHKFL STAQATCLAD BACU014719/1-763 DGEGNVCKKS EGNIMSPTLA GRNGVFSWSP CSRQYLHKFL STAQATCLAD 501 550 ENSTTRP00000006873/1-1163 QPKPGKEYKY PEKLPGELYD ANTQCKWQFG EKAKLCMLDF KK-------- ENSP00000274181/1-1224 QPKPVKEYKY PEKLPGELYD ANTQCKWQFG EKAKLCMLDF KK-------- ENSBTAP00000024569/1-1072 RPKPVKEYKY PEKLPGELYD ANTQCKWQFG EEAKLCTLGF KK-------- bmy_15890T0/1-766 QPKPVKEYKY PEKLPGELYD ANTQCKWQFG EKAKLCMLDF KKASDCWQMF BACU014719/1-763 QPKPVKEYKY PEKLPGELYD ANTQCKWQFG EKAKLCMLDF KKASDSWQMF 551 600 ENSTTRP00000006873/1-1163 -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXWCRGGQC VKYGDEGPKP ENSP00000274181/1-1224 -DICKALWCH RIGRKCETKF MPAAEGTICG HDMWCRGGQC VKYGDEGPKP ENSBTAP00000024569/1-1072 -DICKALWCH RIGRKCETKF MPAAEGTTCG HDMWCRGGQC VKYGDEGPKP bmy_15890T0/1-766 NDICKALWCH RIGRKCETKF MPAAEGTTCG RDRWCRGGQC VKYGDEGPKP BACU014719/1-763 NDICKALWCH RIGRKCETKF MPAAEGTTCG RDRWCRGGQC VKYGDEGPKP 601 650 ENSTTRP00000006873/1-1163 THGHWSDWSP WSPCSRTCGG GVSHRDRLCT NPRPSNGGKF CAGSTRTLKL ENSP00000274181/1-1224 THGHWSDWSS WSPCSRTCGG GVSHRSRLCT NPKPSHGGKF CEGSTRTLKL ENSBTAP00000024569/1-1072 THGHWSDWSP WSPCSRTCGG GVSHRDRLCT NPRPSHGGKF CVGSTRTLKL bmy_15890T0/1-766 THGHWSDWSP WSPCSRTCGG GVSHRDRLCT NPRPSNGGKF CAGSTRTLKL BACU014719/1-763 THGHWSDWSP WSPCSRTCGG GVSHRDRLCT NPRPSNGGKF CAGSTRTLKL 651 700 ENSTTRP00000006873/1-1163 CNSQKCPHNS VDFRALQCAE YNSKRFRGWY YKWKPYTHVE DQDLCKLYCI ENSP00000274181/1-1224 CNSQKCPRDS VDFRAAQCAE HNSRRFRGRH YKWKPYTQVE DQDLCKLYCI ENSBTAP00000024569/1-1072 CNSHTCPHNS IDFRAQQCAE FNGKRFRGWF YKWKPYTHVE DQDFCKLYCI bmy_15890T0/1-766 CNSQKCPHNS VDFRALQCAE YNSKRFRGWY YKWKPYTHVE E--------- BACU014719/1-763 CNSQKCPHNS VDFRALQCAE YNSKRFRGWY YKWKPYTHVE DQDLCKLYCI 701 750 ENSTTRP00000006873/1-1163 AEGFDFFFSL SNKVKDGTPC SEDSRNVCID GICERVGCDN VLGSDAVEDS ENSP00000274181/1-1224 AEGFDFFFSL SNKVKDGTPC SEDSRNVCID GICERVGCDN VLGSDAVEDV ENSBTAP00000024569/1-1072 AEGFDFFFSL SNKVTDGTPC SEDSRNVCID GICERVGCDN ILGSDATEDA bmy_15890T0/1-766 ---------- ---------- ---------- ---------- ---------- BACU014719/1-763 AEGFDFFFSL SNKVKDGTPC SEDSRNVCID GICERVGCDN VLGSDAVEDS 751 800 ENSTTRP00000006873/1-1163 CGVCRGNNSS CTTHKGLYAK QHRANQYYQM VIIPSGARSI RIYEMNVSTS ENSP00000274181/1-1224 CGVCNGNNSA CTIHRGLYTK HHHTNQYYHM VTIPSGARSI RIYEMNVSTS ENSBTAP00000024569/1-1072 CGVCRGNNSS CTMHKGLYAK QHRANQYYQM VTIPSGARSI RIYETNVSTS bmy_15890T0/1-766 ---------- ---------- ------YYQM VIIPSGARSI RIYEMNVSTS BACU014719/1-763 CGVCRGSNSS CTTHKGLYAK QHRANQYYQM VIIPSGARSI RIYEMNVSTS 801 850 ENSTTRP00000006873/1-1163 YISVRNALKK YYLNGHWTVD WPGRYKFSGT AFDYRRSYRE PESLTSPGPT ENSP00000274181/1-1224 YISVRNALRR YYLNGHWTVD WPGRYKFSGT TFDYRRSYNE PENLIATGPT ENSBTAP00000024569/1-1072 YISVRNALKK YYLNGHWTVD WPGQYKFSGT TFDYRRSYKE PESLASPGPT bmy_15890T0/1-766 YISVRNALKK YYLNGHWTVD WPGRYKFSGT AFDYRRSYRE PESLTSPGPT BACU014719/1-763 YISVRNALKK YYLNGHWTVD WPGRYKFSGT AFDYRRSYRE PESLTSPGPT 851 900 ENSTTRP00000006873/1-1163 NETLIVEXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000274181/1-1224 NETLIVELLF QGRNPGVAWE YSMPRLGTEK QPPAQPSYTW AIVRSECSVS ENSBTAP00000024569/1-1072 NETLIVELLF QGRNPGIAWE YSMPRLEVEK KLGAQPSYTW VTIHSECSVS bmy_15890T0/1-766 NETLIMELLF QGRNPGVAWE YSVPRLGGEK KLSTQPSYTW ATIRAECSVS BACU014719/1-763 NETLIVELLF QGRNPGVAWE YSVPRLGGEK KLSTQPSYTW ATIRSECSVS 901 950 ENSTTRP00000006873/1-1163 XXXXQMTTRA ---------- --GCYRDL-- ---------- ------RFPV ENSP00000274181/1-1224 CGGGQMTVRE ---------- --GCYRDL-- ---------- ------KFQV ENSBTAP00000024569/1-1072 CGGGQTTARA ---------- --ACYRDL-- ---------- ------RVPV bmy_15890T0/1-766 CGGGRSLPTA VLGIGAEVPG ALGPWGTLPS SSSHCPGPHH TALDLITLPW BACU014719/1-763 CGGGQMTTRA ---------- --GCYRDL-- ---------- ------RFPV 951 1000 ENSTTRP00000006873/1-1163 NASFCSPDTR PVTGVV--PC KVSACPPRWS VGNWSACSRT CSGGTQSRPI ENSP00000274181/1-1224 NMSFCNPKTR PVTGLV--PC KVSACPPSWS VGNWSACSRT CGGGAQSRPV ENSBTAP00000024569/1-1072 NASFCSPDAR PVTGVV--PC KVSACPPSWS VGNWSACSRT CGGGTQSRAV bmy_15890T0/1-766 SSSHCPGPHH SALVLITLPC SSSHCP---- ---------- --GPHHSALV BACU014719/1-763 NASFCSPDAR PVTGVV--PC KVSACPP--- ---------- ---------- 1001 1050 ENSTTRP00000006873/1-1163 QCTRRAHYKS ERVSASLCPQ PMPSSRQACQ PQSCPPAWSA GPWAECSRTC ENSP00000274181/1-1224 QCTRRVHYDS EPVPASLCPQ PAPSSRQACN SQSCPPAWSA GPWAECSHTC ENSBTAP00000024569/1-1072 QCTRRAHYKS ERVSASLCPQ PVPSSRQACQ PQSCPPAWST GPWAECSRTC bmy_15890T0/1-766 PITL------ -AWSSSLCPG P--------- -HHTALLLIT LPWS--SSHC BACU014719/1-763 ---------- ---------- ---------- ---------- -------RGC 1051 1100 ENSTTRP00000006873/1-1163 GKGWRKRSVA CKSTNPSARA QLLPDAVCTS EPKPRTHEAC LLRRCHKHKK ENSP00000274181/1-1224 GKGWRKRAVA CKSTNPSARA QLLPDAVCTS EPKPRMHEAC LLQRCHKPKK ENSBTAP00000024569/1-1072 GKGWRKRSVA CKSTNPSARA QLLPDAVCTT EPKPRTHEAC LLRRCHKHRK bmy_15890T0/1-766 ---------- ---------- ---------- ---PGPHHSA LV-------- BACU014719/1-763 ---------- ---------- ---------- ---PKLHK-- ---------- 1101 1150 ENSTTRP00000006873/1-1163 LQWLVSSWSQ CSVTCERGTQ KRFFKCAEKY SSGKYRELAP KKCLHLPQPH ENSP00000274181/1-1224 LQWLVSAWSQ CSVTCERGTQ KRFLKCAEKY VSGKYRELAS KKCSHLPKPS ENSBTAP00000024569/1-1072 LQWLVSAWSQ CSVTCERGTQ KRFLKCAEKY VSGKYRELAS KKCLHLPQPQ bmy_15890T0/1-766 --LITLPWSS SHC------- ---------- ---------- ---------- BACU014719/1-763 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000006873/1-1163 LELERICAPF PCPKHPLFAA AGSPQADWFA SPWSQCTASC GGGMQTRSVQ ENSP00000274181/1-1224 LELERACAPL PCPRHPPFAA AGPSRGSWFA SPWSQCTASC GGGVQTRSVQ ENSBTAP00000024569/1-1072 LELQRACAPF PCPKRPAFAA AGPPRASWFA SPWSQCTASC GGGMQMRSVQ bmy_15890T0/1-766 ---------- PGPHHSALV- -------LIT LPWS----SS RPDEESRLL- BACU014719/1-763 ---------L QAPQNLDLP- ---------- --------TD GDDDNDKII- 1201 1250 ENSTTRP00000006873/1-1163 CLAGRRPAVG CSAHQKPAAS QACNTRFCPI AQKKDAFCED RFHWCPLVPQ ENSP00000274181/1-1224 CLAGGRPASG CLLHQKPSAS LACNTHFCPI AEKKDAFCKD YFHWCYLVPQ ENSBTAP00000024569/1-1072 CLAGGRPAAG CSVLQKPTVS QACNTRFCPI AEKKGASCGD RFRWCALAPQ bmy_15890T0/1-766 ------PEGG CYLSI----- ---------- ---------- ---------- BACU014719/1-763 ------VSGK NLMLA----- ---------- ---------- ---------- 1251 1300 ENSTTRP00000006873/1-1163 HGMCSHHFYG QQCCKMCSTS NL ENSP00000274181/1-1224 HGMCSHKFYG KQCCKTCSKS NL ENSBTAP00000024569/1-1072 HGVCGHRFYG QQCCKACSTS N- bmy_15890T0/1-766 ---------- ---------- -- BACU014719/1-763 ---------- ---------- --