KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:37 2014 Check: 00 .. Name: ENSP00000318916/1-520 Len: 538 Check: 5762 Weight: 1.00 Name: ENSBTAP00000024586/1-478 Len: 538 Check: 4052 Weight: 1.00 Name: ENSTTRP00000001034/1-436 Len: 538 Check: 4581 Weight: 1.00 Name: bmy_08557T0/1-411 Len: 538 Check: 4999 Weight: 1.00 Name: BACU002644/1-361 Len: 538 Check: 7616 Weight: 1.00 // 1 50 ENSP00000318916/1-520 -MRNKKILKE DELLSETQQA AFHQ----IA MEPFEINVPK PKRRNGVNFS ENSBTAP00000024586/1-478 -MENEEILKE KELLASTEDG TALDQTMLSR METFEVNDPK PKRRNGMNCI ENSTTRP00000001034/1-436 -MENEEILKE KELSASARER TTLDQTMLST METFELNDPK PKKRNGINCF bmy_08557T0/1-411 MLSTMETFEL NEGIRAQAGG PCSLPSAAAA VCLGCVSDPK PKKRNGINCF BACU002644/1-361 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000318916/1-520 LAVVVIYLIL LTAGAGLLVV QVLNLQARLR VLEMYFLNDT LAAEDSPSFS ENSBTAP00000024586/1-478 MVLVILYLVL LTAGAGLLVI QVLNLQERLR VLEMPYNNET ---------- ENSTTRP00000001034/1-436 TVLLFIYLIL LTAGAGLLVV QVLNLQKRLQ ALETPYNNQT LVPA------ bmy_08557T0/1-411 MVLLVTYLIL LTAGAGLLVV QVLNLQKRLR ALEMPYNNQT LASE------ BACU002644/1-361 MVLLVIYLIL LTAGAGLLVV QVLNLQKRLR ALEMPYNNQT LASE------ 101 150 ENSP00000318916/1-520 LLQSAHPGEH LAQGASRLQV LQAQLTWVRV SHEHLLQRVD NFTQNPGMFR ENSBTAP00000024586/1-478 ---------- ---------- -QAQLTQVVT KQETLQQRMD NFIQIPGIFQ ENSTTRP00000001034/1-436 ---------- ---------- LQAQLIRVRT RQEHLLRLVD NFTRIPXXXX bmy_08557T0/1-411 ---------- --------HF VQAQLARVRT RQEHLLRRVD NFTRIP---- BACU002644/1-361 ---------- --------HF LQAQLARVRT RQEHLLRRVD NFTRIP---- 151 200 ENSP00000318916/1-520 IKGEQGAPG- ------LQGH KG-AMGMPGA PGPPGPPAEK GAKGAMGRDG ENSBTAP00000024586/1-478 SKGAQGGPRL PHLPGPLTGY ILNSFSFP-- ---------- ---------- ENSTTRP00000001034/1-436 XXXXXXX--- --------XX LGKGTRLPRL PGPP------ -AETGTGRDG bmy_08557T0/1-411 ---------- --------GY ILNSFSFP-- ---------- ---------- BACU002644/1-361 ---------- --------GY VLNSFSFP-- ---------- ---------- 201 250 ENSP00000318916/1-520 ATGPSGPQGP PGVKGEA--- --GLQGPQGA PGKQGATGTP GPQGEKGSKG ENSBTAP00000024586/1-478 --GPPGPRGP PGIKGEAGEQ GLGITGGKGR PGSAGNSGKK KVGDPSGARG ENSTTRP00000001034/1-436 AAGPPGPQGP PGIKGEA--- ---------- ---------- ---------- bmy_08557T0/1-411 --GPPGPRGP PGIKGEA--- ---------- ---------- ---------- BACU002644/1-361 --GPPGPRGP PGIKGEA--- ---------- ---------- ---------- 251 300 ENSP00000318916/1-520 DGGLIGPKGE TGTKGEKGDL GLPGSKGDRG MKGDAGVMGP PGAQGSKGDF ENSBTAP00000024586/1-478 GPGSGGETAG SEDKGADKFL GFSGRKGDMG MKGD---MGP PGARGDKGDS ENSTTRP00000001034/1-436 ---------- ---------- ---GRKGDIG MKGDMGVMGP PGARGQKGDS bmy_08557T0/1-411 ---------- ---------- ---GRKGDVG MKGDMGVMGP PGAPGYKGDS BACU002644/1-361 ---------- ---------- ---GRKGDVG MKGDMGVMGP PGARGSKGDS 301 350 ENSP00000318916/1-520 GRPGPPGLAG FPGAKGDQGQ PGLQGVPGPP GAVGHPGAKG EPGSAGSPGR ENSBTAP00000024586/1-478 GKPGFPGVAG IPGIKGDQGP PGMKGLPGFP GAVGSPGAKG DTGSIGPTGP ENSTTRP00000001034/1-436 GMPGSPGVAG IPGLKGDQGQ PGAKGLPGFP GAAGSPGAKG EPGSAGPTGP bmy_08557T0/1-411 GMPGSPGMAG IPGLKGDQGQ PGAKGLPGFP GAVGSPGAKG EPGSAGPTGP BACU002644/1-361 GMPGSPGVAG IPGLKGDQGQ PGAKGLPGFP GAVGSPGAKG EPGSAGPTGP 351 400 ENSP00000318916/1-520 AGLPGSPGSP GATGLKGSKG DTGLQGQQGR KGESGVPGPA GVKGEQGSPG ENSBTAP00000024586/1-478 IGPPGLPGTP GVEGVKGSKG DTGLQGQKGT KGESGFPGLS GVKGEKGSPG ENSTTRP00000001034/1-436 IGPSGRPGSP GAEGVKGSKG DTGLQGQKGT KGESGVPGPA GMKGEMGSPG bmy_08557T0/1-411 IGPSGRPGSP GSEGVKGSKG DTGLQGQKGT KGESGVPGPA GLKGERGSPG BACU002644/1-361 IGPSGRPGSP GTEGVKGSKG DTGLQGQKGT KGESGVPGPA GLKGERGSPG 401 450 ENSP00000318916/1-520 LAGPKGAPGQ AGQKGDQGVK GSSGEQGVKG EKGERGENSV SVRIVGSSNR ENSBTAP00000024586/1-478 LGGLKGAPGP TGQKGEPGSR GATGPQGAKG EKGQKGDSSL SVRIIGSRNR ENSTTRP00000001034/1-436 LVGLKGAPGP DGRKGEPGAK GSSGTKGAKG EKGQKGESMV SVRIAGSRNR bmy_08557T0/1-411 LVGLKGAPGP DGRKGEPGAK GSSGPQGAKG EKGQKGESMV SVRIAGSRNR BACU002644/1-361 LVGLNGAPGP DGRKGEPGAK GSSGPQGAKG EKGQKGESMV SVRIAGSRNR 451 500 ENSP00000318916/1-520 GRAEVYYSGT WGTICDDEWQ NSDAIVFCRM LGYSKGRALY KVGAGTGQIW ENSBTAP00000024586/1-478 GRAEVFYNGA WGTICDDSWD GSDATVFCRM LGYSSGSPVY NVGAGSGNIW ENSTTRP00000001034/1-436 GRAEIYYNGA WGTICDDDWD NSDATVFCRM LGFSSGTAVF NVEAGTGTIW bmy_08557T0/1-411 GRAEIYYNGA WGTICDDDWD NSDATVFCRM LGYSSGTAVF NVGGGTGTIW BACU002644/1-361 GRAEIYYNGA WGTICDDDWD DSDATVFCRM LGYSSGTAIF NVGGGTGTIW 501 550 ENSP00000318916/1-520 LDNVQCRGTE STLWSCTKNS WGHHDCSHEE DAGVECSV ENSBTAP00000024586/1-478 LDDVACSGSE WTLWDCNKSS WGSHNCNHNE DAGVNCS- ENSTTRP00000001034/1-436 LDNVACQGSE SSLWSCSKNS WGSHNCNHSE DAGVDCR- bmy_08557T0/1-411 LDNVSCQGSE STLWSCSKNN WGSHNCNHSE DAGVDCS- BACU002644/1-361 LDNVACRGSE SSLWSCSKNN WGSHNCNHSE DAGVDCS-