KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:37 2014 Check: 00 .. Name: ENSP00000357470/1-468 Len: 508 Check: 6007 Weight: 1.00 Name: ENSBTAP00000024587/1-464 Len: 508 Check: 6463 Weight: 1.00 Name: bmy_09704T0/1-453 Len: 508 Check: 5727 Weight: 1.00 Name: BACU007476/1-452 Len: 508 Check: 665 Weight: 1.00 Name: ENSTTRP00000013263/1-466 Len: 508 Check: 7662 Weight: 1.00 // 1 50 ENSP00000357470/1-468 ----MLAVG- ---------- ------CAL- ------LAAL LAAP------ ENSBTAP00000024587/1-464 ----MLAVR- ---------- ------CAL- ------LTAL LAAS------ bmy_09704T0/1-453 MEDIWPVVGG SEAEGSKEAG HTRLAACYLG GRRDSRLSVR LKTPPKQESF BACU007476/1-452 ----MLAVR- ---------- ------CAL- ------LTAL LATP------ ENSTTRP00000013263/1-466 ----MLAVR- ---------- ------CAL- ------LTAL LATP------ 51 100 ENSP00000357470/1-468 -GAALAPRRC PAQ-----EV ARGVLTSLPG DSVTLTCPGV EPEDNATVHW ENSBTAP00000024587/1-464 -GTALVLKGC PAL-----EV ASDVLTSVPG ANVTLTCPGG GPEDNATVHW bmy_09704T0/1-453 AGRGDTSAGP PSPGAQVGEV ANDVLTSLPG ASVTLTCPGG EAGDNATVHW BACU007476/1-452 -GTALAPGGC PAL-----EM ANDVLTSLPG ASVTLTCPGG EAGDNATVHW ENSTTRP00000013263/1-466 -GTALAPGGC PAL-----EV PNDVLTSLPG ASVTLTCPGG EAGDNATVHW 101 150 ENSP00000357470/1-468 VLRKPAAGSH PSRWAGMGRR LLLRSVQLHD SGNYSCYRAG RPAGTVHLLV ENSBTAP00000024587/1-464 VLRDQMTGSH HGRPAGVGRR LLLQSVQLSD SGNYSCYRED HPAGSVRLVV bmy_09704T0/1-453 VLRNQVTGSR QGRWAGVGRR LLLRSVLLSD SGNYSCYEDG RPAGSVRLLV BACU007476/1-452 VLRNQVTGSR QGRWAGVGRR LLLRSVLLSD SGNYSCYEDG RPAGSVRLVV ENSTTRP00000013263/1-466 VLRNQVTGSR QGRWAGVGRR LLLRSVLLSD SGNYSCYEDG RPAGSVRLLV 151 200 ENSP00000357470/1-468 DVPPEEPQLS CFRKSPLSNV VCEWGPRSTP SLTTKAVLLV RKFQNSPAED ENSBTAP00000024587/1-464 DVPPEKPQIS CIQKSPLSRV NCEWSPRSPP SLTTKAVLLV KKF---PKQV bmy_09704T0/1-453 DVPPEEPQLS CFRKSPLSNV GCEWSPRSPP SPTTKAVLLV RKF---PVKD BACU007476/1-452 DVPPEEPQLS CFRKSPLSNV GCEWSPRSPP SPTTKAVLLV RKF---PVKD ENSTTRP00000013263/1-466 DVPPEEPQLS CFRRSPLSNV GCEWSPRSPP SPTTKAVLLV RKF--SPVKD 201 250 ENSP00000357470/1-468 FQEPCQYSQE SQKFSCQLAV PEGDSSFYIV SMCVASSVGS KFSKTQTFQG ENSBTAP00000024587/1-464 FQEPCQYSPE SQRFSCQLAV PEGDSSFYVL SLCVANSAGN KSSNPLGFDG bmy_09704T0/1-453 FQEPCQYSPE SQQFSCQLAV PEGDNSLYVV SLCVSNSAGS QSSRPQTFEG BACU007476/1-452 FQEPCQYSPE SQQFSCQLAV PEGDNSLYVV SLCVSNSAGS QSSRPQTFEG ENSTTRP00000013263/1-466 FQEPCQYSPE SQQFSCQLAV PEGDNSLYVV SLCVSNSAGS QSSRPQTFEG 251 300 ENSP00000357470/1-468 CGILQPDPPA NITVTAVARN PRWLSVTWQD PHSWNSSFYR LRFELRYRAE ENSBTAP00000024587/1-464 YKLLQPDPPV NITVSAVDRN PRWLSVTWQD PPSWNSYYYR LQFELRYRTE bmy_09704T0/1-453 YGILQPDPPV NVTVTAVDRN PRWLSVTWQD PXSWNSYFYR LQFELRYRAE BACU007476/1-452 YGILQPDPPV NVTVTAVDRN PRWLSVTWQD PPSWNSYFYR LQFELRYRAE ENSTTRP00000013263/1-466 YGILQPDPPV NVTVTAVDRN PRWLSVTWQD PPSWNSYFYR LQFELRYRAE 301 350 ENSP00000357470/1-468 RSKTFTTWMV KDLQHHCVIH DAWSGLRHVV QLRAQEEFGQ GEWSEWSPEA ENSBTAP00000024587/1-464 RSETFTTLML KDPQYHCIIN DAWSGMRHVV QLRAQEEFGN GLWSEWSPEV bmy_09704T0/1-453 RSKTFTMWMV KELQYHCIIH DAWSGMKHVV QLRAQEEFGH GLW------- BACU007476/1-452 RSKTFTMWMV KELQYHCIIH DAWSGMRHVV QLRAQEEFGH GLW------- ENSTTRP00000013263/1-466 RSKTFTMWMV KELQYHCIIH DAWSGMKHVV QLRAQEEFGH GLWSEWSQEV 351 400 ENSP00000357470/1-468 MGTPWTESRS PPAENEVSTP MQALTTNKDD DNILFRDSAN ATSLPVQDSS ENSBTAP00000024587/1-464 TGTPWTESRS S-TTTKLPTS TQAPTTTEDN ENIFSKDSAK TTSLPVQDST bmy_09704T0/1-453 ---------- ---------- ---------- ---------- -----MQDST BACU007476/1-452 ------KSKS SPVETELPPS TQAPATNEDN ENIFSKDSAN ATSLPVQDST ENSTTRP00000013263/1-466 TGVPWTESKS SPAETELPPS AQAPTTNEDN ENIFSKDSAN ATSLPVQDST 401 450 ENSP00000357470/1-468 SVPLPTFLVA GGSLAFGTLL CIAIVLRFKK TWKLRALKEG KTSMHPPYSL ENSBTAP00000024587/1-464 SVPLPAFLVA GGSLAFGTLL CIGIILRFKK TGKLQALKEG KTSAHPSYSL bmy_09704T0/1-453 SVPLPTFLVA GGSLAFGTLL CIGIVLRFKK TGKLQALKES KTSVHPPYSL BACU007476/1-452 SVPLPTFLVA GGSLAFGTLL CIGIVLRFKK TGKLQALKES KTSVHPPYSL ENSTTRP00000013263/1-466 SVPLPTFLVA GGSLAFGTLL CIGIVLRFKK TGKLQALKEG KTSVHPPYSL 451 500 ENSP00000357470/1-468 GQLVPERPRP TPVLVPLISP PVSPSSLGSD NTSSHNRPDA RDPRSPYDIS ENSBTAP00000024587/1-464 GQLVPERPKP TPALVPLISP PVSPSSLESD NTSRNSRPDA KGPGSPYDVS bmy_09704T0/1-453 GQLVPERPKP TPVLVPLISP PVSPSSLGSD NTSRTSRPDA SGPQSPYDIS BACU007476/1-452 GQLVPERPKP TPVLVPLISP PVSPSSLGSD NTSRTSRPDA SGPQSPYDIS ENSTTRP00000013263/1-466 GQLVPERPKP TPVLVPLISP PVSPSSLGSD NTSRTSRPDA SGPQRPYDVS 501 550 ENSP00000357470/1-468 NTDYFFPR ENSBTAP00000024587/1-464 NRDYFFPR bmy_09704T0/1-453 NRDYFFPR BACU007476/1-452 NRDYFFPR ENSTTRP00000013263/1-466 NRDYFFPR