KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:40 2014 Check: 00 .. Name: ENSP00000378578/1-1218 Len: 1241 Check: 7937 Weight: 1.00 Name: ENSBTAP00000024607/1-1221 Len: 1241 Check: 9203 Weight: 1.00 Name: ENSTTRP00000005279/1-1207 Len: 1241 Check: 7943 Weight: 1.00 Name: BACU019040/1-1178 Len: 1241 Check: 2292 Weight: 1.00 Name: bmy_11732T0/1-798 Len: 1241 Check: 9920 Weight: 1.00 // 1 50 ENSP00000378578/1-1218 MAFTERVNSS GNSLYNDDRN LLRIREKERR NQEAHQEKEA FPEKIPLFGE ENSBTAP00000024607/1-1221 -------MAA QSSLYNEDRN LLRIREKERR NQEAHQDKEA FSEKIPLFGE ENSTTRP00000005279/1-1207 -------MAA QSSLYNEDRN LLRIREKERR NQEAHQEKEA FSEKIPLFGE BACU019040/1-1178 ---------- -SSLYNEDRN LLRIREKERR NQEAHQEKEA FSEKIPLFGE bmy_11732T0/1-798 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000378578/1-1218 PYKTAKGDEL SSRIQNMLGN YEEVKEFLST KSHTHRLDAS ENRLGKPKYP ENSBTAP00000024607/1-1221 PYKTEKGDEL SSRIQNMLGN YEEMKEFLSS KSHPQRLDAS ENRLGKPRYP ENSTTRP00000005279/1-1207 PYKTEKGDEL SSRIQNMLGN YEEVKEFLST KSHPQRLDAS ENRLGKPRYP BACU019040/1-1178 PYKTEKGDEL SSRIQNMLGN YEEVKEFLST KSHPQRLDAS ENRLGKPRYP bmy_11732T0/1-798 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000378578/1-1218 LIPDKGSSIP SSSFHTSVHH QSIHTPASGP LSVGNISHNP KMAQPRTEPM ENSBTAP00000024607/1-1221 LFPEKGSSLP PHSFHTSVHH QPVNTPACGP HPAGNIGHHP KMAQPRMEPM ENSTTRP00000005279/1-1207 SFPEKGSSIP SHSFHTSVHH QPINTPASGP LPIGTISHNP KMAQPRMEPM BACU019040/1-1178 SFPEKGSSIP SHSFHTSVHH QPINTPASGP LPIGTISHNP KMAQPRMEPM bmy_11732T0/1-798 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000378578/1-1218 PSLHAKSCGP PDSQHLTQDR LGQEGFGSSH HKKGDRRADG DHCASVTDSA ENSBTAP00000024607/1-1221 PSLHAKSYGP PDSQHLTQER LGQEGYGSSH HKKGDRRADG DHCALTTDSA ENSTTRP00000005279/1-1207 PGLHVKSYGP PDTQHMTQDR LGQEGYSSSH HKKGDRRADG DHCASMTDSA BACU019040/1-1178 PSLHVKSYGP PDSQHMTQDR LGQEGYSSSH HKKGDRRADG DHCASMTDSA bmy_11732T0/1-798 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000378578/1-1218 PERELSPLIS LPSPVPPLSP IHSNQQTLPR TQGSSKVHGS SNNSKGYCPA ENSBTAP00000024607/1-1221 PERELSPLFS LPSPVPPLSP VHSNQQTAPR TQGSGKVPSS SSSNKGYCLA ENSTTRP00000005279/1-1207 PERELSPLFS LPSPVPPLSP VHSNQQTLPR TQGSNKGHSS NSNNKGYCPA BACU019040/1-1178 PERELSPLFS LPSPVPPLSP VHSNQQTLPR TQGNNKVHSS NSNNKGYCPA bmy_11732T0/1-798 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000378578/1-1218 KSPKDLAVKV HDKETPQDSL -------VAP AQPPSQTFPP PSLPSKSVAM ENSBTAP00000024607/1-1221 KSPKDLAVKV HDKETPQDST GAVASLGVAP PQPPSQTFPP PSLPSKSLAM ENSTTRP00000005279/1-1207 KSPKDLPVKI HDKETLQDSS -------VAP PQPPSQTFPP PPLPSKSLAM BACU019040/1-1178 KSPKDLPVKV QEKETLQDSS VAVASLGVAP PQPPSQTFPP PPLPSKSLAM bmy_11732T0/1-798 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000378578/1-1218 QQKPTAYVRP MDGQDQAPSE SPELKPLPED YRQQTFEKTD LKVPAKAKLT ENSBTAP00000024607/1-1221 QQKPTAYVRP MDGQDQAPSE SPELKPLPEE YRQQTFEKSD LKVPAKAKLT ENSTTRP00000005279/1-1207 QQKPTAYVRP MDGQDQAPSE SPELKPLPED YRQQSFEKTD LKVPAKAKLT BACU019040/1-1178 QQKPTAYVRP MDGQDQAPSE SPELKPLPED YRQQSFEKTD LKVPAKAKLT bmy_11732T0/1-798 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000378578/1-1218 KLKMPSQSVE QTYSNEVHCV EEILKEMTHS WPPPLTAIHT PSTAEPSKFP ENSBTAP00000024607/1-1221 KLKMPSQSVE QTYSNEVHCV EEILKEMTHS WPPPLTAIHT PSTAEPSKFP ENSTTRP00000005279/1-1207 KLKMPSQSVE QTYSSEVHCV EEILKEMTHS WPPPLTAIHT PSTAEPSKFP BACU019040/1-1178 KLKMPSQSVE QTYSSEVHCV EEILKEMTHS WPPPLTAIHT PSTAEPSKFP bmy_11732T0/1-798 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000378578/1-1218 FPTKDSQHVS SVTQNQKQYD TSSKTHSNSQ QGTSSMLEDD LQLSDSEDSD ENSBTAP00000024607/1-1221 FPTKDSQHIS SAVPNQKQYD TSSKTHSNSQ QGTSSMLKDD LQLSDSEDSD ENSTTRP00000005279/1-1207 FPAKDSQHIS SATLNQKQYD TSSKTHSNSQ QGT-SMLKDD LQLSDSEDSD BACU019040/1-1178 FPAKDSQHIS SAALNQKQYD TSSKTHSNSQ QGT-SMLKDD LQLSDSEDSD bmy_11732T0/1-798 ---------- ---------- ---------- --MNRMLKDD LQLSDSEDSD 451 500 ENSP00000378578/1-1218 SEQTPEKPPS SSAPPSAPQS LPEPVASAHS SSAESESTSD SDSSSDSESE ENSBTAP00000024607/1-1221 SDQTSEKPPF APAPPSAPPA LPAAAASAHS SSAESESTSD SDSSSDSESE ENSTTRP00000005279/1-1207 SDQTPEKPPS ASAPPSAPQA LPAAAASTHS SSAESESTSD SDSSSDSESE BACU019040/1-1178 SGQTPEKPPS ASAPPSAPQA LPAAAASAHS SSAESESTSD SDSSSDSESE bmy_11732T0/1-798 SGQTPEKPPS ASAPPSAPQA LPAAAASAHS SSAESESTSD SDSSSDSESE 501 550 ENSP00000378578/1-1218 SSSSDSEENE PLETPAPEPE PPTTNKWQLD NWLTKVSQPA APPEGPRSTE ENSBTAP00000024607/1-1221 SSSSDSEENE PREAPAPEPE PPTTNKWQLD NWLTKVSQPA VPTEAPGSTE ENSTTRP00000005279/1-1207 SSSSDSEENE PREAPAPEPE PPTTNKWQLD NWLTKVSQPA PPAEAPGSAV BACU019040/1-1178 SSSSDSEENE PREAPAPEPE PPTTNKWQLD NWLTKVSQPA PPAEAPGSAE bmy_11732T0/1-798 SSSSDSEENE PREAPAPEPE PPTTNKWQLD NWLTKVSQPA PPAEAPGSAE 551 600 ENSP00000378578/1-1218 PPRRHPESKG -SSDSATS-Q EHSESKDPPP KSSSKAPRAP PEAPHPGKRS ENSBTAP00000024607/1-1221 PPARPPDTKG KGGDSATAGH ERPESKEPPP KGSSKAPRVP SEGPHAGKRS ENSTTRP00000005279/1-1207 PPARHPDSKG KGGDGATGGH ERSESKEPPP KSSSKAPRVP SEGPHAGKRS BACU019040/1-1178 PPARHPDSKG KGGDGATGGH ERSESKEPPP KSSSKAPRVP SEGPHAGKRS bmy_11732T0/1-798 PPARHPDSKG KGGDGATGGH ERSESKEPPP KSSSKAPRVP SEGPHAGKRS 601 650 ENSP00000378578/1-1218 CQKSPAQQEP PQRQTVGTKQ PKKPVKASAR ------AGSR TSLQGEREPG ENSBTAP00000024607/1-1221 CQKSPAQQEP PQRQTVGSKQ PKKPIKASAP GHADAPADAR ACLQVESEPG ENSTTRP00000005279/1-1207 CQKSPAQQEP PQRQTVGSKQ PKKPVKASAP ------ADAR ASLLVESEPG BACU019040/1-1178 CQKSPAQQEP PQRQTVGSKQ PKKPIKASAP GHADAHADAR ASLLVESEPG bmy_11732T0/1-798 CQKSPAQQEP PQRQTVGSKQ PKKPVKASAP GHADAHADAR ASLLVESEPG 651 700 ENSP00000378578/1-1218 LLPYGSRDQT SKDKPKVKTK GRPRAAASNE PKPAVPPSSE KKKHKSSLPA ENSBTAP00000024607/1-1221 LPPPASRDQP SKDKPKVKTK GRPRAADSRE PKPAVPTPSD RKKHRSG--- ENSTTRP00000005279/1-1207 LPPQASKDQP SKDKPKVKTK GRPRAAESRE PKPVAPTPSE RKKHRSGPPA BACU019040/1-1178 LPPQASKDQP SKDKPKVKTK GRPRAAESRE PKPVAPTPSE RKKHRSGPPA bmy_11732T0/1-798 LPPQASKDQP SKDKPKVKTK GRPRAAESRE PKPVAPTPSE RKKHRSGPPA 701 750 ENSP00000378578/1-1218 PSKALSGPEP AKD-NVEDRT PEHFALVPLT ESQGPPHSGS ---GSRTSGC ENSBTAP00000024607/1-1221 PPKA-----P PKDAAAEDRS PEHFALVPLT QSQGPVRGGS GGAGARTSGC ENSTTRP00000005279/1-1207 PPKA-----P PKD-AAEDRS PEHFALVPLT QSQGPARSG- ---GARTSGC BACU019040/1-1178 PPKA-----P PKD-AAEDRS PEHFALVPLT QSQGPARSG- ---GARTSGC bmy_11732T0/1-798 PPKA-----P LKD-AAEDRS PEHFALVPLT QSQGPARSG- ---GARTSGC 751 800 ENSP00000378578/1-1218 RQAVVVQEDS RKDRLPLPLR DTKLLSPLRD TPPPQSLMVK ITLDLLSRIP ENSBTAP00000024607/1-1221 RLAVVVQEDR RKDKPPVPSR DTKLLSPLRD TPPPQSLVVK ITLDLLSRIP ENSTTRP00000005279/1-1207 RLAVVVQEDR RKDKPLVPLR DTKLLSPLRD TPLPQSLMVK ITLDLLSRIP BACU019040/1-1178 RLAVVVQEDR RKDKPLVPLR DTKLLSPLRD TPLPQSLMVK ITLDLLSRIP bmy_11732T0/1-798 RLAVVVQEDR RKDKPLVPLR DTKLLSPLRD TPLPQSLMVK ITLDLLSRIP 801 850 ENSP00000378578/1-1218 QPPGKGSRQR KAEDKQPPAG KKHSSEKRSS DSSSKLAKKR KGEAERDCDN ENSBTAP00000024607/1-1221 QPPGKGSRPK KPEDKQPPAG KKPDPEKRSS ENASKLAKKR KGEAEKDHDS ENSTTRP00000005279/1-1207 QPPGKGSRPK KPEDKQPLAA KKADSEKRSS ENSSKLAKKR KGEAERDHDS BACU019040/1-1178 QPPGKGSRPK KPEDKQPSAG KKPDSEKRSS ENSSKLAKKR KGEAERDHNS bmy_11732T0/1-798 QPPGKGSRPK KPEDKQPSAG KKPDSEKRSS ENSSKLAKKR KGEAERDHDS 851 900 ENSP00000378578/1-1218 KKIRLEKEIK SQSSSSSSSH KESSKTKPSR PSSQSSKKEM LPPPPV---S ENSBTAP00000024607/1-1221 KKVRLEKEVK SQPLSSSS-H KESSKSKMSR PSSEPSKKEM LPPSLV--SS ENSTTRP00000005279/1-1207 KKIRLEKEVK SQSSPSSS-H KESSKSKTPR PSSEPSKKEM LPPSLV--SS BACU019040/1-1178 KKIRLEKEVK SQSSPSSS-H KESSKSKTPR PSSEPSKKEM LPPSLVSSSS bmy_11732T0/1-798 KKIRLEKEVK SQSSPSSS-H KESSKSKTPK PSSEPSKKEM LPPSLVSSSS 901 950 ENSP00000378578/1-1218 SSSQKPAKPA LKRSRREADT CGQDPPKSAS STKSNHKDSS IPKQRRVEGK ENSBTAP00000024607/1-1221 SSSQKPAKPA QKRPRQE-DP GCQDPQKSAG SAKGSHRDPS ASKHRKAEGK ENSTTRP00000005279/1-1207 SSSQKPAKPA QKRSRQEADP SGQNPPKSAS SSKGNHRDSS VSKHRKVEGK BACU019040/1-1178 SSSQKPAKPA QKRSRQEADP SGQDPPKSAS STKGNHRDSS VSKHRKVEGK bmy_11732T0/1-798 SSSQKPAKPA QKRSRQEADP SGQDPPKSAS STKGNHRDSS VSKHRKVEGK 951 1000 ENSP00000378578/1-1218 GSRSSSEHKG SSGDTANPFP VPSLPNGNSK PGKPQVKFDK QQADLHMREA ENSBTAP00000024607/1-1221 VSGSSTEHKG SSGDTANRFP VPSLPNGNSK PGKPHVKFDK QQADFHLKEA ENSTTRP00000005279/1-1207 GPGSSTEHKG SSGDTANRFP VPSLPNGNSK PGKPHMKLDK QQADFHMKEA BACU019040/1-1178 GSGSSTEHKG SSGDTANRFP VPSLPNGNSK PGKPHMKLDK QQADFHMKEA bmy_11732T0/1-798 GSGSSTEHKG SSGDTANRFP VPSLPNGNSK PGKPHMKLDK QQADFHMKEA 1001 1050 ENSP00000378578/1-1218 KKMKQKAELM TDRVGKAFKY LEAVLSFIEC GIATESESQS SKSAYSVYSE ENSBTAP00000024607/1-1221 KRLKDKAELV TDKVGKAFKY LEAALSFIEC GVALESESPA SKSAYSIYSE ENSTTRP00000005279/1-1207 RRLKDKAELV TDKVGKAFKY LEAALSFIEC GIAMELESPA SKSACSIYAE BACU019040/1-1178 KRLKDKAELV TDKVGKAFKY LEAALSFIEC GIAMELESPA SKSACSIYAE bmy_11732T0/1-798 KRLKDKAELV TDKVGKAFKY LEAALSFIEC GIAMELESPA SKSACSIYAE 1051 1100 ENSP00000378578/1-1218 TVDLIKFIMS LKSFSDATAP TQEKIFAVLC MRCQSILNMA MFRCKKDIAI ENSBTAP00000024607/1-1221 TVDLIKFILS LKSFSDATTP TQEKIFAVLC MRCQSILNMA MFRCKKDMAI ENSTTRP00000005279/1-1207 TLDLIKFIMS LKSFSDATTP TQEKIFAVLC MRCQSILNMA MFRCKKDIAI BACU019040/1-1178 TLDLIKFIMS LKSFSDATTP TQEKIFAVLC MRCQSILNMA MFRCKKDIAI bmy_11732T0/1-798 TLDLIKFIMS LKSFSDATTP TQEKIFAVLC MRCQSILNMA MFRCKKDIAI 1101 1150 ENSP00000378578/1-1218 KYSRTLNKH- FESSSKVAQA PSPCIARSTG TPSPLSPMPS PASSVGSQSS ENSBTAP00000024607/1-1221 KYSRTLNEHF FKTSSKVAQA PSPCIA-STG TPSPLSPIPS PASSIGSQSS ENSTTRP00000005279/1-1207 KYSRTLNEHF FKTSSKVAQA PSPCIARSTG TPSPLSPMPS PASSIGSQSS BACU019040/1-1178 KYSRTLNEHF FKTSSKVAQA PSPCIARSTG TPSPLSPMPS PASSIGSQSG bmy_11732T0/1-798 KYSRTLNEHF FKTSSKVAQA PSPCIARSTG TPSPLSPMPS PASSIGSQSS 1151 1200 ENSP00000378578/1-1218 AGSVGSSGVA ATISTPVTIQ NMTSSYVTIT SHVLTAFDLW EQAEALTRKN ENSBTAP00000024607/1-1221 AGSVGSGALP ATISTPVTIQ NMTSSYVSIT SHVLTAFDLW EQAEVLTRKN ENSTTRP00000005279/1-1207 AGSVGSGGMP ATISTPVTIQ NMTSSYVTIT SHVLTAFDLW EQAEVLTRKN BACU019040/1-1178 AGGVGSGGVP ATISTPVTIQ NMTSSYVTIT SHVLTAFDLW EQAEVLTRKN bmy_11732T0/1-798 AGSVGSGGMP ATISTPVTIQ NMTSSYVTIT SHVLTAFDLW EQAEVLTRKN 1201 1250 ENSP00000378578/1-1218 KEFFARLSTN VCTLALNSSL VDLVHYTRQG FQQLQELTKT P ENSBTAP00000024607/1-1221 KEFFAQLSTS VCALALNSSL MDLVHYTRQG FQRLKQVTKT P ENSTTRP00000005279/1-1207 KEFFAQLGTG VCTLALDSSL MDLVRYTRQG FQRLKQVTKT P BACU019040/1-1178 K--------- ---------- ---------- ---------- - bmy_11732T0/1-798 KEFFAQLGTG VCALALDSSL MDLVRYTRQG FQRLKQVTKT P