KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:47 2014 Check: 00 .. Name: ENSP00000254466/1-880 Len: 880 Check: 8061 Weight: 1.00 Name: ENSBTAP00000024649/1-875 Len: 880 Check: 8816 Weight: 1.00 Name: ENSTTRP00000013407/1-871 Len: 880 Check: 870 Weight: 1.00 Name: bmy_02898T0/1-857 Len: 880 Check: 788 Weight: 1.00 Name: BACU013963/1-860 Len: 880 Check: 5435 Weight: 1.00 // 1 50 ENSP00000254466/1-880 MSQPAGGRRK PRTLGPPVCS IRPFKSSEQY LEAMKEDLAE WLRDLYGLDI ENSBTAP00000024649/1-875 MPQPRASRRR PGTPGPRVSS IQPFKSSEQY LEAMKEDLAE WLRDLYGVDI ENSTTRP00000013407/1-871 MAQPGVGRRR PGTPRPPVSS IRPFKSSEQY LEAMKEDLAE WLRDLYGLDI bmy_02898T0/1-857 MSQPGAGRRR PGTPRPPVRS IRPFKSSEQY LEAMKEDLAE WLRDLYGLDI BACU013963/1-860 MSQPGAGRRR PGTPRPPVRS VRPFKSSEQY LEAMKEDLAE WLRDLYGLDI 51 100 ENSP00000254466/1-880 DAANFLQVLE TGLVLCQHAN VVTDAALAFL AEAPAQAQKI PMPRVGVSCN ENSBTAP00000024649/1-875 SAANFLEVLE TGLVLCQHAN AITEAALAFL AETPDQAQRL PLPRAGVSYN ENSTTRP00000013407/1-871 DAANFLQALE TGLALCQHAN AVTEAALAFL AEAPARAQSM PLPRAGVSCN bmy_02898T0/1-857 DAANFLQALE TGLVLCQHAN AVTEAALVFL AEAPARAQRI PLPRARVSCN BACU013963/1-860 DAANFLQALE TGLVLCQHAN AVTEAALAFL AEAPARAQRI PLPRAGVSCN 101 150 ENSP00000254466/1-880 GAAQPGTFQA RDNVSNFIQW CRKEMGIQEV LMFETEDLVL RKNVKNVVLC ENSBTAP00000024649/1-875 EAAQPRTFQA RDNISNFIHW CRKEMGIQEV LMFETEDLVL RKNVKNVVLC ENSTTRP00000013407/1-871 AAAQPGTFQA RDNISNFIQW CRKEMGIQEV LMFETDDLVL RKNVKNVVLC bmy_02898T0/1-857 GSAQPGTFQA RDNISNFIQW CRKEMGIQEV LMFETDDLVL RKNVKNVVLC BACU013963/1-860 GAAQPGTFQA RDNISNFIQW CRKEMGIQEV LMFETDDLVL RKNVKNVVLC 151 200 ENSP00000254466/1-880 LLELGRRAWR FGVAAPTLVQ LEEEIEEEVR RELALPPPDP SPPAPPRRQP ENSBTAP00000024649/1-875 LLELGRRAWR FGVAAPTLVR LEEEIEEELW LERALPPPKP PPPAPPERRP ENSTTRP00000013407/1-871 LLELGRRARR FGVAAPP-VR LEEDIDQELR LELL---PPP APTRP----P bmy_02898T0/1-857 LLELGRRARR FGVAAPTLVR LE-------- ---------- APTRP----P BACU013963/1-860 LLELGRRAQC FGVAAPTLVR LEEEIDEELR LELALPAPDP ---------- 201 250 ENSP00000254466/1-880 CHFRNLDQMV QSLVSHCTCP VQFSMVKVSE GKYRVGDSNT LIFIRILRNH ENSBTAP00000024649/1-875 CHSRDLDQLV QSLVSHCTCP IQFSMVKVSE GKYRVGESNT LIFIRILRNH ENSTTRP00000013407/1-871 CHFRXXXXXV QSLVSRCTCP VQFSMVKVSE GKYRVGDSNT LIFIRILRNH bmy_02898T0/1-857 CHFRNLDQLV QSLVSRCTCP VQFSMVKVSE GKYRVGDSNT LIFIRILRNH BACU013963/1-860 ---------V QSLVSRCTCP VQFSMVKVSE GKYCVGDSNT LIFIRILRNH 251 300 ENSP00000254466/1-880 VMVRVGGGWD TLGHYLDKHD PCRCTSLSHK PGSFLKPPAP PVQHEVRVQD ENSBTAP00000024649/1-875 VMVRVGGGWD TLGHYLDKHD PCRCTSLSHK TGSFLQPPAH PVQHEVRVQD ENSTTRP00000013407/1-871 VMVRVGGGWD TLGHYLDKHD PCRCTSLSHK TGSFLKPPVP LVQHEVRVDD bmy_02898T0/1-857 VMVRVGGGWD TLGHYLDKHD PCRCTSLSHK TGSFLKPPVP PVQHEVRVED BACU013963/1-860 VMVRVGGGWD TLGHYLDKHD PCRCTSLSHK TGSFLKPPVP PVQHEVRVED 301 350 ENSP00000254466/1-880 GPSQTQPTMT ISRSQSPPPP VDWKTYTSSD RRLRPPTPSS PRPRRERGAG ENSBTAP00000024649/1-875 GPSQPQPTMT ISRSQSPLPA VDWKTYTSSG RKLRPPAVSS PRPQCEQRAR ENSTTRP00000013407/1-871 GPSQPQPTMT ISRSQSPLPS VDWTTYTSSG RKQRPPAASS PTPHRERRAG bmy_02898T0/1-857 GPSPPQPTMT ISRSQSPLPC VDWKTYTSSG RKLRPPAASS PTPHRERRAG BACU013963/1-860 GPSQPQPTMT ISRSQSPLPS VDWKTYTSSG RKLRPPAASS PTPHCERRAG 351 400 ENSP00000254466/1-880 TGASREMAPF LRCQERSLIP SWRQPTAGDS PPSPQSSSTQ KGRDPQCTSS ENSBTAP00000024649/1-875 PGVHRETAPL LRCQEKSLAP SRRQLPAGDN LPRPQSSPTP RDQDPPCTSL ENSTTRP00000013407/1-871 AGILRETAPF PRCQEKSLAL CWRQLPDGDS PPSPQSSPTP RGQGTQCTSS bmy_02898T0/1-857 AGILRETAPF PRCQEKSLTP SWRQLPAGDS PPSPQSSPTP RGRDPQCTSS BACU013963/1-860 AGILRETAPF PRCQEKSFTP SWRQLPAGDS PPSPQSSPTP RGRDPQCTSS 401 450 ENSP00000254466/1-880 GKREERYPPE LPRGRIPTSW VHEETDSWGT DAGNPTPQRL RAIEATTKGI ENSBTAP00000024649/1-875 GKREERHPPE PPRGRTPTSS VHERTDSRGT HARTPTPQRV RAPEATAKGT ENSTTRP00000013407/1-871 GKREDRYPPE LPRRRTPTSW VHEETDSWGT RARTPIPQGL QAPEATTTGT bmy_02898T0/1-857 GKREDRYPPE LPRRRTPTSW VHEETDSWGT RARTPISQGL QAPEATTTGT BACU013963/1-860 RKREDRCPPE LPRRRTPTSW VHEETDSWRT RARTPISQGL QAPEATTTGT 451 500 ENSP00000254466/1-880 SARGPSPLPR SFGPAECLGL RLPLRDEAKG AFFQFREPES VRSPTPVQGL ENSBTAP00000024649/1-875 PARGLSPLPR SPSPAKPVGP RQPPWGEVEG ASSQLREPAP VCSPSPVKGS ENSTTRP00000013407/1-871 PAGGASPLPC SSSPAKPVGP RPPPGDEAEG ASSQLRETAS VHSPSPVKGP bmy_02898T0/1-857 PAGGPSPLPC SSSPAKPVGP RPPPRGEAEG ASSQLKETAS VHSPSPVKGP BACU013963/1-860 PAGGPSPLPC SSSPAKPVGP RPPPRGEAEG ASSQLRETAS VHSPSPVKGP 501 550 ENSP00000254466/1-880 TKIPIRLPPA RPPTPGRSFP GATSGSPRTE LGRDPIPLRA VTVDLAGSTH ENSBTAP00000024649/1-875 TKIPVQLPPA CPPTPGRGFA GTVSGGPSTE LKRGPLPLRA -TSDLSGSRH ENSTTRP00000013407/1-871 TKILVRLPPA CPPTLGRSFP GTASGGPRTE LGRGPIPLRA VTGDLSGSRP bmy_02898T0/1-857 TKIPVQLPPA CPPTPGRSFP GTASGGPRTE LGRGPIPLKA VIGDLSGSRH BACU013963/1-860 TKIPVQLPPA CPLTPGRSFP GTASGGPRTE LGRGPIPLKA VIGDLSGSRH 551 600 ENSP00000254466/1-880 GDCSVEVRQE DQQLDIQVMA EARESWDLGL QEQEGRYTPL PLGGNKEQAI ENSBTAP00000024649/1-875 EHCSVEEGQE DLKLGVQVTA EAGGPWGLGP QHREGRCTPL PSGRTKEQGI ENSTTRP00000013407/1-871 GDCSVEERQE DQKLDVQVTA EAGEPWGLGP QHQEGRCTPL PSGGIKEQAI bmy_02898T0/1-857 GDCCVEERQE DQKLDVQVTA EAGEPWGLGP QHREGRCTPL PSGGIKEQAI BACU013963/1-860 GDCCVEERQE DQKLDVQVTA EAGEPWGLGP QHREGRCTPL PAGGIKERAT 601 650 ENSP00000254466/1-880 YCSLEEEILG NMKLLEVRSA CPQGTRSGVI PRSGVYIPRL AGQWPEPGGP ENSBTAP00000024649/1-875 HHGLEEELPT NMKLLGMAGA RPQGTGSVVI PRSGVYVPSL GGWWPDPGGL ENSTTRP00000013407/1-871 HHSLGEQLLA SMKLLEVAAV CPQGAASGVV PRSGVYVPSL GGRWPEPGGP bmy_02898T0/1-857 YHSLGEQLLA NMKLLEVAGA CPQRTGSGVI PRSGVYVPSL GGRWPEPGGP BACU013963/1-860 YHSLGEQLLA NMKLLEVAGA CPQGTGSGVI RRSGVYVPSL GGRWPEPGGP 651 700 ENSP00000254466/1-880 YDKAIQELAQ GSPSLLKVDL EAWKAAPTGS PKPAVTPGPG SLKGKLGARQ ENSBTAP00000024649/1-875 YDKVIQELIQ DPPPLLKVDL GAWKAAPPGS PTPAVTACPG SLKGKLRAQE ENSTTRP00000013407/1-871 YDKVIQELAQ GPPPLLKVDL GAWKAAPTGC PKPAVSAGPG SPKRKLGAEE bmy_02898T0/1-857 YDKVIQELAQ GPPPLLKVDL GAWKAAPTGS PKPAVSAGPG SPKGKLGAEE BACU013963/1-860 YDKVIQELAQ GPPPLLKVDL GAWKAAPTGS PKPAVSAGPG SPKGKLGAEE 701 750 ENSP00000254466/1-880 SGPRTKASLS AKGTHMRKVP PQGGQDCSAS TVSASPEAPT PSPLDPNSDK ENSBTAP00000024649/1-875 SGLRTVANPS AKGISTK--- AQGGQDCSAP TVSASPESLT LSPSDPSSER ENSTTRP00000013407/1-871 SGLRTKASPS AKGAGTTKVP AQRGQDCSAP AVSATPESST PSPSAPSSDK bmy_02898T0/1-857 SGLRTKASPS AKGARTTKVP AQGGQDCSAP AVSATPESAT PSPSAPSSDK BACU013963/1-860 SGLRTKASPS AKGARTTKVP AQGGQDCSAP AVSATPESAT PSPSAPSSDK 751 800 ENSP00000254466/1-880 AKACLSKGRR TLRKPKRVPS IYKLKLRPRI RPRRDHRPEK QPSRIPRPLA ENSBTAP00000024649/1-875 AKACPTKGKR TLRKPQRIPS IYKLKLRPRI RPRRDHRPEK RPSRIPKPLT ENSTTRP00000013407/1-871 AKACPGKGKR TLRKPRRVPS IYKLKLRHRI RPRRDHRPEK QPSRIPKPLT bmy_02898T0/1-857 AKACPGKGKR TLRKPQRVPS IYKLKLRHRI RPRRDHRPEK QPSRIPKPLT BACU013963/1-860 AKACPGKGKR TLRKPQRVPS IYKLKLRHRI RPRRDHRPEK QPSRIPKPLT 801 850 ENSP00000254466/1-880 YVFLGPARQP PKDRLLRAVL GSKGGEASRV DGASVGEEEE EGKEEKEPAA ENSBTAP00000024649/1-875 CLPLGPVRAP LKGRLVRAAL GSKGGEAALV DGASAG-EEE DREERKEPAA ENSTTRP00000013407/1-871 CLHLGPAKAP PRGRLVRAVL GSNGGKAALG AGASAG-EKE EGEERKGPAA bmy_02898T0/1-857 YLHLGPAKAP PRGRLVRAVL GSNGGKAALV DGASAG-ERE EGKERKEPAA BACU013963/1-860 YLHLGPAKAP PRGRLVRAVL GSNGGKAALV DGASAG-EKE EGKERREPAA 851 900 ENSP00000254466/1-880 PLESSPQPPE GLQPHWLNQA PLPPEEESWV ENSBTAP00000024649/1-875 SLESGSPPSE GQGPWQLDPV PLSPEEESWV ENSTTRP00000013407/1-871 PLESSSPPLE GQGPQQLDQA PASPEEESWV bmy_02898T0/1-857 PLESSSQPLE GQGPQQLDQA PLSPEEESWV BACU013963/1-860 PLESSAQPLE GQGPQQLDQA PLSPEEESWV