KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:23:48 2014  Check: 00 ..

 Name: ENSP00000257863/1-573     Len:    699  Check:  5856  Weight:  1.00
 Name: ENSBTAP00000024657/1-476  Len:    699  Check:  7014  Weight:  1.00
 Name: BACU008077/1-648          Len:    699  Check:  8873  Weight:  1.00
 Name: bmy_04684T0/1-585         Len:    699  Check:  9154  Weight:  1.00
 Name: ENSTTRP00000009096/1-576  Len:    699  Check:  443  Weight:  1.00

//


                          1                                                   50
ENSP00000257863/1-573     --MLGSLGLW ALLPTAV--- -------EAP PNRRTCVFFE APGVRGSTKT 
ENSBTAP00000024657/1-476  --MLGVLGLW ALLPTAV--- -------QAP PSRRTCVFFE APGVRGSTQN 
BACU008077/1-648          --MLGILGLW ALLPTAV--- -------QAP PGRRTCVFFE APGVRGSTKN 
bmy_04684T0/1-585         MFCLSLAAVF APAFTLILNP PLSLPWAAAP PGRRTCVFFE APGVRGSTKN 
ENSTTRP00000009096/1-576  --MLGILGLW ALLPTAV--- -------QAP PGRRTCVFFE APGVRGSTKN 


                          51                                                 100
ENSP00000257863/1-573     LGELLDTGTE LPRAIRCLYS RCCFGIWNLT QDRAQVEMQG CRDSDEPGCE 
ENSBTAP00000024657/1-476  LGKLLDAGPG PPRVIHCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE 
BACU008077/1-648          LGKLLDAGPG PPRVIRCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE 
bmy_04684T0/1-585         LGKLLDAGPG PPRVIRCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE 
ENSTTRP00000009096/1-576  LGKLLDAGPG PPRVIHCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE 


                          101                                                150
ENSP00000257863/1-573     SLHCDPSPRA HPSPGSTLFT CSCGTDFCNA NYSHLPPPGS PGTPGSQGPQ 
ENSBTAP00000024657/1-476  SPRCDPSPRA HPRPSSTLFT CSCGADFCNA NYSHLPPLGS PGTPGLEGPQ 
BACU008077/1-648          SPHCDPSPRA HPSPSFTLFT CSCGTDFCNA NYSHLSRLGS PGTPGSQGPK 
bmy_04684T0/1-585         SPHCDPSSRA HPSPSFTLFT CSCGTDFCNA NYSHLPRLGS PGTPGSQGPK 
ENSTTRP00000009096/1-576  SPHCDPSPRA HPSPSFTLFT CSCGTDFCNA NYSHLPHLGS PGTPGSQGPK 


                          151                                                200
ENSP00000257863/1-573     AAPGESIWM- ALVLLGLFLL LLLLLGSIIL ALLQRKNYRV RGEPV----- 
ENSBTAP00000024657/1-476  AISGESTWI- ALLLLGL-LL LLLLLSSSIL ALLQRKACRE RGGPE----- 
BACU008077/1-648          AIPGSHPGCG SQVGAGA-QV RM-------R ALLQRKGCRA HGGPEPGPGP 
bmy_04684T0/1-585         AIPGESIWM- ALVLLGL-LL LLLLLSNIIL ALLQRKACPV HGGPE--PGP 
ENSTTRP00000009096/1-576  AIPGESIWT- ALVLLGL-LL LLLLLSNIIL ALLQRKACPV HGGPE--PGP 


                          201                                                250
ENSP00000257863/1-573     -PEPRPDSGR DWSVELQELP ELCFSQVIRE GGHAVVWAGQ LQGKLVAIKA 
ENSBTAP00000024657/1-476  -PEPESDSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGQ LQGKLVAIKA 
BACU008077/1-648          EPEPEPHSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGR LQGKLVAIKA 
bmy_04684T0/1-585         EPEPEPHSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGR LQGKLVAIKA 
ENSTTRP00000009096/1-576  EPEPEPHSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGR LQGKLVAIKA 


                          251                                                300
ENSP00000257863/1-573     FPPRSVAQFQ AERALYELPG LQHDHIVRFI TASRGGPGRL LSGPLLVLEL 
ENSBTAP00000024657/1-476  FPLRAVAQFQ AERALYELPG LQHDHIVRFI TASRGCPGPL PCGPLLVLEL 
BACU008077/1-648          FPLRAVAQFQ AERALYGLPG LRHDHIVRLI TASRGSPGPL PCGPLLVLEL 
bmy_04684T0/1-585         FPLRAVAQFQ AERALYGLPG LRHDHIVRLI TASRGSPGPL PCGPLLVLEL 
ENSTTRP00000009096/1-576  FPLRAVAQFQ AERALYGLPG LRHDHIVRLI TASRGSPGPL PCGPLLVLEL 


                          301                                                350
ENSP00000257863/1-573     HPKGSLCHYL TQYTSDWGSS LRMALSLAQG LAFLHEERWQ N--------- 
ENSBTAP00000024657/1-476  HPKGSLCHYL TQHTSDWGSS LRMALSLAQG LAFLHEERWQ D--------- 
BACU008077/1-648          HPKGSLCHYL AQHTSDWGSS LRMALSLAQG LAFLHEERWQ D--------- 
bmy_04684T0/1-585         HPKGSLCHYL AQHTSDWGSS LRMALSLAQG LAFLHEERWQ DGGLEGKDWV 
ENSTTRP00000009096/1-576  HPKXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X--------- 


                          351                                                400
ENSP00000257863/1-573     ---------- -------GQY KPGIAHRDLS SQNVLIREDG SCAIGDLGLA 
ENSBTAP00000024657/1-476  ---------- -------GQY KPGIAHRDLS SQNVLVRDDG SCAIGDLGLA 
BACU008077/1-648          ---------- -------GQY KPGIAHRDLS SQNVLIRDDG SCAIGDLGLA 
bmy_04684T0/1-585         KKRKEEDPCP FNLASPTGQY KPGIAHRDLS SQNVLIRDDG SCAIGDLGLA 
ENSTTRP00000009096/1-576  ---------- -------XQY KPGIAHRDLS SQNVLIRDDG SCAIGDLGLA 


                          401                                                450
ENSP00000257863/1-573     LVLPGLTQPP AWTPTQPQGP AAIMEAGTQR YMAPELLDKT LDLQDWGMAL 
ENSBTAP00000024657/1-476  LVLPGLAQPP TWAPSQPRGP AAIME----- ---------- ---------- 
BACU008077/1-648          LVLPGLAQPP TWAPTQPRGP AAIMEAGTQR YMAPELLDKT LDLQDWGTAL 
bmy_04684T0/1-585         LVLPGLAQPP TWAPTQPRGP AAIMEAGTQR YMAPELLDKT LDLQDWGTAL 
ENSTTRP00000009096/1-576  LVLPGLAQPP TWAPTQPRGP AAIMEAGTQR YMAPELLDKT LDLQDWGTAL 


                          451                                                500
ENSP00000257863/1-573     RRADIYSLAL LLWEILSRCP DLRPDSSPPP FQLAYEAELG NTPTSDELWA 
ENSBTAP00000024657/1-476  ---------- ---------- ---------- ---------- ---------- 
BACU008077/1-648          RRADVYSLAL LLWEIMSRCP DLRPDSRPPP FQLAYEAELG STPTTCELWN 
bmy_04684T0/1-585         RRADVYSLAL LLWEIMSRCP DLRPDSRPPP FQLAYEAELG STPTTCELWT 
ENSTTRP00000009096/1-576  RRADVYSLAL LLWEIMSRCP DLRPDSRTPP FQLAYEAELG STPTTCELWT 


                          501                                                550
ENSP00000257863/1-573     LAVQERRRPY IPSTWRCFAT DPDGLRELLE DCWDADPEAR LTAECVQQRL 
ENSBTAP00000024657/1-476  ---------- ---------- DPGGLRELLE DCWDADPEAR LTAECVQQRL 
BACU008077/1-648          LAVEERRRPH IPSTWGCFAT DPGGLRELLE DCWDADPEAR LTAECVQQRL 
bmy_04684T0/1-585         LAVEERRRPH IPSTWCCFAT DPGGLRELLE DCWDADPEAR LTAECVQQRL 
ENSTTRP00000009096/1-576  LAVEERRRPH IPSTWCCFAT DPGGLRELLE DCWDADPEAR LTAECVQQRL 


                          551                                                600
ENSP00000257863/1-573     AALAHPQE-- ---------- -SHPFPESCP RG-------- ---------- 
ENSBTAP00000024657/1-476  AALASPEE-- ---------- -AHLFPEGCA QD-------- ---------- 
BACU008077/1-648          ASLALSKELT KDVEKMGAIF MDAPVSGGVG AAQSGNLMFV VGGVTDEFAA 
bmy_04684T0/1-585         ASLSRPQE-- ---------- -AHPFPQGCP HG-------- ---------- 
ENSTTRP00000009096/1-576  ASLARPQE-- ---------- -AHPFPQGCP HG-------- ---------- 


                          601                                                650
ENSP00000257863/1-573     ---------- ----CPP--- ---------- ---------- -----LCPED 
ENSBTAP00000024657/1-476  ---------- ----CSL--- ---------- ---------- -----CCLED 
BACU008077/1-648          AQELLGYKGS NVVHCGALGT GQAVRIGYNT LLGGFRTTLM TKDLGLAQDS 
bmy_04684T0/1-585         ---------- ----CPP--- ---------- ---------- -----LCPED 
ENSTTRP00000009096/1-576  ---------- ----CPP--- ---------- ---------- -----LCPED 


                          651                                                700
ENSP00000257863/1-573     CTSIPAPTIL PCRPQRSACH FSVQQGPCSR NPQPACTLSP V-------- 
ENSBTAP00000024657/1-476  HFSTP-PAIL PSRLQLSACH FTVQQGPFSR NPQPTWTTSP V-------- 
BACU008077/1-648          AVSTKSPILL GSQ-----AH QIYRMMHVKG YSEEACSSVF QFLREEETF 
bmy_04684T0/1-585         RLSTPPP--- --------CH ---------- --SPS----- --------- 
ENSTTRP00000009096/1-576  RLSSPPPAIL PRRPQLSVCH LSVQQGPRSR NPQPACTSSH V--------