KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:23:48 2014 Check: 00 ..
Name: ENSP00000257863/1-573 Len: 699 Check: 5856 Weight: 1.00
Name: ENSBTAP00000024657/1-476 Len: 699 Check: 7014 Weight: 1.00
Name: BACU008077/1-648 Len: 699 Check: 8873 Weight: 1.00
Name: bmy_04684T0/1-585 Len: 699 Check: 9154 Weight: 1.00
Name: ENSTTRP00000009096/1-576 Len: 699 Check: 443 Weight: 1.00
//
1 50
ENSP00000257863/1-573 --MLGSLGLW ALLPTAV--- -------EAP PNRRTCVFFE APGVRGSTKT
ENSBTAP00000024657/1-476 --MLGVLGLW ALLPTAV--- -------QAP PSRRTCVFFE APGVRGSTQN
BACU008077/1-648 --MLGILGLW ALLPTAV--- -------QAP PGRRTCVFFE APGVRGSTKN
bmy_04684T0/1-585 MFCLSLAAVF APAFTLILNP PLSLPWAAAP PGRRTCVFFE APGVRGSTKN
ENSTTRP00000009096/1-576 --MLGILGLW ALLPTAV--- -------QAP PGRRTCVFFE APGVRGSTKN
51 100
ENSP00000257863/1-573 LGELLDTGTE LPRAIRCLYS RCCFGIWNLT QDRAQVEMQG CRDSDEPGCE
ENSBTAP00000024657/1-476 LGKLLDAGPG PPRVIHCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE
BACU008077/1-648 LGKLLDAGPG PPRVIRCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE
bmy_04684T0/1-585 LGKLLDAGPG PPRVIRCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE
ENSTTRP00000009096/1-576 LGKLLDAGPG PPRVIHCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE
101 150
ENSP00000257863/1-573 SLHCDPSPRA HPSPGSTLFT CSCGTDFCNA NYSHLPPPGS PGTPGSQGPQ
ENSBTAP00000024657/1-476 SPRCDPSPRA HPRPSSTLFT CSCGADFCNA NYSHLPPLGS PGTPGLEGPQ
BACU008077/1-648 SPHCDPSPRA HPSPSFTLFT CSCGTDFCNA NYSHLSRLGS PGTPGSQGPK
bmy_04684T0/1-585 SPHCDPSSRA HPSPSFTLFT CSCGTDFCNA NYSHLPRLGS PGTPGSQGPK
ENSTTRP00000009096/1-576 SPHCDPSPRA HPSPSFTLFT CSCGTDFCNA NYSHLPHLGS PGTPGSQGPK
151 200
ENSP00000257863/1-573 AAPGESIWM- ALVLLGLFLL LLLLLGSIIL ALLQRKNYRV RGEPV-----
ENSBTAP00000024657/1-476 AISGESTWI- ALLLLGL-LL LLLLLSSSIL ALLQRKACRE RGGPE-----
BACU008077/1-648 AIPGSHPGCG SQVGAGA-QV RM-------R ALLQRKGCRA HGGPEPGPGP
bmy_04684T0/1-585 AIPGESIWM- ALVLLGL-LL LLLLLSNIIL ALLQRKACPV HGGPE--PGP
ENSTTRP00000009096/1-576 AIPGESIWT- ALVLLGL-LL LLLLLSNIIL ALLQRKACPV HGGPE--PGP
201 250
ENSP00000257863/1-573 -PEPRPDSGR DWSVELQELP ELCFSQVIRE GGHAVVWAGQ LQGKLVAIKA
ENSBTAP00000024657/1-476 -PEPESDSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGQ LQGKLVAIKA
BACU008077/1-648 EPEPEPHSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGR LQGKLVAIKA
bmy_04684T0/1-585 EPEPEPHSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGR LQGKLVAIKA
ENSTTRP00000009096/1-576 EPEPEPHSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGR LQGKLVAIKA
251 300
ENSP00000257863/1-573 FPPRSVAQFQ AERALYELPG LQHDHIVRFI TASRGGPGRL LSGPLLVLEL
ENSBTAP00000024657/1-476 FPLRAVAQFQ AERALYELPG LQHDHIVRFI TASRGCPGPL PCGPLLVLEL
BACU008077/1-648 FPLRAVAQFQ AERALYGLPG LRHDHIVRLI TASRGSPGPL PCGPLLVLEL
bmy_04684T0/1-585 FPLRAVAQFQ AERALYGLPG LRHDHIVRLI TASRGSPGPL PCGPLLVLEL
ENSTTRP00000009096/1-576 FPLRAVAQFQ AERALYGLPG LRHDHIVRLI TASRGSPGPL PCGPLLVLEL
301 350
ENSP00000257863/1-573 HPKGSLCHYL TQYTSDWGSS LRMALSLAQG LAFLHEERWQ N---------
ENSBTAP00000024657/1-476 HPKGSLCHYL TQHTSDWGSS LRMALSLAQG LAFLHEERWQ D---------
BACU008077/1-648 HPKGSLCHYL AQHTSDWGSS LRMALSLAQG LAFLHEERWQ D---------
bmy_04684T0/1-585 HPKGSLCHYL AQHTSDWGSS LRMALSLAQG LAFLHEERWQ DGGLEGKDWV
ENSTTRP00000009096/1-576 HPKXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X---------
351 400
ENSP00000257863/1-573 ---------- -------GQY KPGIAHRDLS SQNVLIREDG SCAIGDLGLA
ENSBTAP00000024657/1-476 ---------- -------GQY KPGIAHRDLS SQNVLVRDDG SCAIGDLGLA
BACU008077/1-648 ---------- -------GQY KPGIAHRDLS SQNVLIRDDG SCAIGDLGLA
bmy_04684T0/1-585 KKRKEEDPCP FNLASPTGQY KPGIAHRDLS SQNVLIRDDG SCAIGDLGLA
ENSTTRP00000009096/1-576 ---------- -------XQY KPGIAHRDLS SQNVLIRDDG SCAIGDLGLA
401 450
ENSP00000257863/1-573 LVLPGLTQPP AWTPTQPQGP AAIMEAGTQR YMAPELLDKT LDLQDWGMAL
ENSBTAP00000024657/1-476 LVLPGLAQPP TWAPSQPRGP AAIME----- ---------- ----------
BACU008077/1-648 LVLPGLAQPP TWAPTQPRGP AAIMEAGTQR YMAPELLDKT LDLQDWGTAL
bmy_04684T0/1-585 LVLPGLAQPP TWAPTQPRGP AAIMEAGTQR YMAPELLDKT LDLQDWGTAL
ENSTTRP00000009096/1-576 LVLPGLAQPP TWAPTQPRGP AAIMEAGTQR YMAPELLDKT LDLQDWGTAL
451 500
ENSP00000257863/1-573 RRADIYSLAL LLWEILSRCP DLRPDSSPPP FQLAYEAELG NTPTSDELWA
ENSBTAP00000024657/1-476 ---------- ---------- ---------- ---------- ----------
BACU008077/1-648 RRADVYSLAL LLWEIMSRCP DLRPDSRPPP FQLAYEAELG STPTTCELWN
bmy_04684T0/1-585 RRADVYSLAL LLWEIMSRCP DLRPDSRPPP FQLAYEAELG STPTTCELWT
ENSTTRP00000009096/1-576 RRADVYSLAL LLWEIMSRCP DLRPDSRTPP FQLAYEAELG STPTTCELWT
501 550
ENSP00000257863/1-573 LAVQERRRPY IPSTWRCFAT DPDGLRELLE DCWDADPEAR LTAECVQQRL
ENSBTAP00000024657/1-476 ---------- ---------- DPGGLRELLE DCWDADPEAR LTAECVQQRL
BACU008077/1-648 LAVEERRRPH IPSTWGCFAT DPGGLRELLE DCWDADPEAR LTAECVQQRL
bmy_04684T0/1-585 LAVEERRRPH IPSTWCCFAT DPGGLRELLE DCWDADPEAR LTAECVQQRL
ENSTTRP00000009096/1-576 LAVEERRRPH IPSTWCCFAT DPGGLRELLE DCWDADPEAR LTAECVQQRL
551 600
ENSP00000257863/1-573 AALAHPQE-- ---------- -SHPFPESCP RG-------- ----------
ENSBTAP00000024657/1-476 AALASPEE-- ---------- -AHLFPEGCA QD-------- ----------
BACU008077/1-648 ASLALSKELT KDVEKMGAIF MDAPVSGGVG AAQSGNLMFV VGGVTDEFAA
bmy_04684T0/1-585 ASLSRPQE-- ---------- -AHPFPQGCP HG-------- ----------
ENSTTRP00000009096/1-576 ASLARPQE-- ---------- -AHPFPQGCP HG-------- ----------
601 650
ENSP00000257863/1-573 ---------- ----CPP--- ---------- ---------- -----LCPED
ENSBTAP00000024657/1-476 ---------- ----CSL--- ---------- ---------- -----CCLED
BACU008077/1-648 AQELLGYKGS NVVHCGALGT GQAVRIGYNT LLGGFRTTLM TKDLGLAQDS
bmy_04684T0/1-585 ---------- ----CPP--- ---------- ---------- -----LCPED
ENSTTRP00000009096/1-576 ---------- ----CPP--- ---------- ---------- -----LCPED
651 700
ENSP00000257863/1-573 CTSIPAPTIL PCRPQRSACH FSVQQGPCSR NPQPACTLSP V--------
ENSBTAP00000024657/1-476 HFSTP-PAIL PSRLQLSACH FTVQQGPFSR NPQPTWTTSP V--------
BACU008077/1-648 AVSTKSPILL GSQ-----AH QIYRMMHVKG YSEEACSSVF QFLREEETF
bmy_04684T0/1-585 RLSTPPP--- --------CH ---------- --SPS----- ---------
ENSTTRP00000009096/1-576 RLSSPPPAIL PRRPQLSVCH LSVQQGPRSR NPQPACTSSH V--------