KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:23:54 2014 Check: 00 .. Name: ENSP00000233954/1-556 Len: 596 Check: 8701 Weight: 1.00 Name: ENSBTAP00000024715/1-556 Len: 596 Check: 2754 Weight: 1.00 Name: bmy_09503T0/1-592 Len: 596 Check: 415 Weight: 1.00 Name: ENSTTRP00000005671/1-557 Len: 596 Check: 1668 Weight: 1.00 // 1 50 ENSP00000233954/1-556 ---MGFWILA ILTILMYSTA AKFSKQSWGL ENEALIVRCP RQGKPSYTVD ENSBTAP00000024715/1-556 RNRMRLWVSV ILTALIPSTS ARFSRPFLGL ENEALIVTCS RQEKYPYPVD bmy_09503T0/1-592 ---MRLWVLV ILTILIPSTS ATFSKSSWGL ENEALIVRCP RQEKSRYPVV ENSTTRP00000005671/1-557 ---MRLWVLV IPAILIPSTS ATFRKSSWGL ENEALIVRCP RQEKSRYPVV 51 100 ENSP00000233954/1-556 WYYSQTNKSI PTQERNRVFA SGQLLKFLPA AVADSGIYTC IVRSPTFNRT ENSBTAP00000024715/1-556 WYYSKTNKSI STQRGNRIVA SGKHLKFLPA KVSDSGFYTC IVRRPTSNKT bmy_09503T0/1-592 WYYSKTNKRI TTQRRSRVVA SGERLKFLPA KVNDSGFYTC IIRSPTSNKT ENSTTRP00000005671/1-557 WYYSKTNKHI TTQRRSRVVA SGERLKFLPA KVNDSGFYTC IIRSPTSNKT 101 150 ENSP00000233954/1-556 GYANVTIYKK QSDCNVPDYL MYSTVSGSEK NSKIYCPTID LYNWTAPLEW ENSBTAP00000024715/1-556 GYVNVTIFEK QPDCNIPDYL IYSTTSGSEK NSLIFCPTIN RYNWTQPVEW bmy_09503T0/1-592 GYVNVTIYKK QPGCDIPDFL IYSTTSGSEK NSRIYCPTID LYNWTAPVEW ENSTTRP00000005671/1-557 GYVNVTIYKK QPGCDIPDFL IYSTTSGSER NSKIYCPTID LYNWTAPVEW 151 200 ENSP00000233954/1-556 FK-------- ---------- ---------- ----NCQALQ GSRYRAHKSF ENSBTAP00000024715/1-556 FK-------- ---------- ---------- ----NCEVLQ GPRYLVHKSF bmy_09503T0/1-592 FKVKGNVREI DENYTIKIGG SKELLNVDWD FSFQNCEVLQ GSRYRAHKSF ENSTTRP00000005671/1-557 FK-------- ---------- ---------- ----NCEVLQ GPRYRAHKSF 201 250 ENSP00000233954/1-556 LVIDNVMTED AGDYTCKFIH NENGANYSVT ATRSFTVKDE QGFSLFPVIG ENSBTAP00000024715/1-556 LLIDDATNKD TGHYTCKFIH NEYGVKYIVT ATKSFTVTEE KGFSLPPVIK bmy_09503T0/1-592 LQIDNANSKD AGDYTCKFMH NENGVNYTVT ATRSFTVIDK RSFSLLPVII ENSTTRP00000005671/1-557 LLIDRADSKD TGDYTCKFMH NENGVNYTVT ATRSFTVIDK QSFSLLPVII 251 300 ENSP00000233954/1-556 APAQNEIKEV EIGKNANLTC SACFGKGTQF LAAVLWQLNG TKITDFGEPR ENSBTAP00000024715/1-556 APPQNEIKEV EIGKPINITC LACFGKGPQV MAEAFWRVNG SEVKNFGETR bmy_09503T0/1-592 APPQNETKEV EIGKPADLRC SACFGKGSQI MADILWQVNR SNVENFGEAR ENSTTRP00000005671/1-557 APPQNETKEV EIGKPANLRC SACFGKGSQT MADILWQVNG SNVENFGEAR 301 350 ENSP00000233954/1-556 IQQEEGQNQS FSNGLACLDM VLRIADVKEE DLLLQYDCLA LNLHGLRRHT ENSBTAP00000024715/1-556 IQVVQEQTQS PSDELTCRNT VLKIEDVKEE DLTSKYDCLA MNFHGFITHT bmy_09503T0/1-592 IQVLQEQNQS SRSELTCLNA VLRIADVKEE DLSLKYDCLA MNFRGLIMHT ENSTTRP00000005671/1-557 MQVLQEQTQS SRSKLTCLNA VLRIADVKEE DFSLKYDCLA MNFRGLITHT 351 400 ENSP00000233954/1-556 VRLSRKNPID HHSIYCIIAV CSVFLMLINV LVIILKMFWI EATLLWRDIA ENSBTAP00000024715/1-556 VTLRRKNPMD QQSTYYMLAG FTLLLLLINA LVIILKVFWI EIILFWRDIV bmy_09503T0/1-592 VRLRRKNPTD QQSTYYVLAG FSILFLLINV LVIILKAFWI EIILLWRDIA ENSTTRP00000005671/1-557 VRLRRKNPMD QQSTYYVLAG FSILFLLINV SVVILKAFWI EIILLWRDIA 401 450 ENSP00000233954/1-556 KPYKTRNDGK LYDAYVVYPR NYKSSTDGAS RVEHFVHQIL PDVLENKCGY ENSBTAP00000024715/1-556 RPSKTRNDGK IYDAYVIYPR SCKNSPEGAS SVEYFVHQIL PDVLENKCGY bmy_09503T0/1-592 RPHKTRNDGK IYDAYVIYPR NCKNSPEGAS SVEYFVHQIL PDVLENKCGY ENSTTRP00000005671/1-557 RPHKTRNDGK IYDAYVIYPR NCKNSPEGAS SVEYFVHQIL PDVLENKCGY 451 500 ENSP00000233954/1-556 TLCIYGRDML PGEDVVTAVE TNIRKSRRHI FILTPQITHN KEFAYEQEVA ENSBTAP00000024715/1-556 NLCIYGRDLL PGQDVASAVE SSIRMSRRHL FILTPEIVHS KEFTYEREIA bmy_09503T0/1-592 DLYIYGRDLL PGEDVATTVE TSIQKSRRHI FILTPEVMHS KEFTYEWEIA ENSTTRP00000005671/1-557 DLYIYGRDML PGEDVATTVE TSIQKSRRHI FILTPEVTHS KECAYEWEIA 501 550 ENSP00000233954/1-556 LHCALIQNDA KVILIEMEAL SELDMLQAEA LQDSLQHLMK VQGTIKWRED ENSBTAP00000024715/1-556 LHSALIQQDS KAILIEMEAL CPPGGLQFEE LQDSLKHLIK VQGTIKWRED bmy_09503T0/1-592 LHNTLIQNDS KAILIEMEAL CPPSGLQFGE LQDSLKHLVE VQGTIKWRED ENSTTRP00000005671/1-557 LHNTLIRNDS KAILIEMEAL CPPSGLQFGE LQDSLKHLVK VQGTIKWRED 551 600 ENSP00000233954/1-556 HIANKRSLNS KFWKHVRYQM P-VPSKIPRK ASSLTPLAAQ KQ---- ENSBTAP00000024715/1-556 HVANKRSLNS KFWKHVRYHM PQVPSRLPRK TPSLASLS-- ------ bmy_09503T0/1-592 LVANKQSLNS KFWKHIRYHM P-VPSKLPRK TPCXASSSAQ GQQCLL ENSTTRP00000005671/1-557 LVANKQSLNS KFWKHIRYHM P-VPSQLPRK TPRSASSSAQ GQQ---