KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:54 2014 Check: 00 .. Name: bmy_09564T0/1-741 Len: 1009 Check: 9929 Weight: 1.00 Name: ENSP00000241453/1-993 Len: 1009 Check: 7690 Weight: 1.00 Name: ENSBTAP00000024717/1-987 Len: 1009 Check: 4235 Weight: 1.00 Name: BACU000122/1-908 Len: 1009 Check: 2506 Weight: 1.00 Name: ENSTTRP00000002636/1-980 Len: 1009 Check: 5237 Weight: 1.00 // 1 50 bmy_09564T0/1-741 MLTDTVQSYD GLMQKSSSDF FQLVKTVVFS AMIFETITNQ DLPVIKCVLI ENSP00000241453/1-993 ---------- --MPALARDG GQLPLLVVFS AMIFGTITNQ DLPVIKCVLI ENSBTAP00000024717/1-987 ---------- ---------L PLFAFTVVFS TMIFQTITNQ DLPEIKCVLI BACU000122/1-908 ---------- --------SL SLFCFTVVFS AMIFETITNQ DLPVIKCVLI ENSTTRP00000002636/1-980 ---------- ---------- -------VFS AMIFETIRNQ DLPVIKCVLI 51 100 bmy_09564T0/1-741 NHRNNDSSVG TSSSNPLASE SREDLGCALR PESTEAVYEA ATVEVDVTAS ENSP00000241453/1-993 NHKNNDSSVG KSSSYPMVSE SPEDLGCALR PQSSGTVYEA AAVEVDVSAS ENSBTAP00000024717/1-987 NHGNNDSSVR TSSSNPMASE SREDLACALR PEGTETIYEA ATVQVDVSAS BACU000122/1-908 NHRNNDSSVG TSSSNPLASE SREDLGCALR PESTEAVYEA STVEVDITAS ENSTTRP00000002636/1-980 NHRNNDSSVG TSSSNPLASE SREDLDCALR PESTEAVYEA ATVEVDVTAS 101 150 bmy_09564T0/1-741 ITLQVLVTTP GNISCLWVFK HSSLNCQPHF DLQNRGVVSM VILKMTETQA ENSP00000241453/1-993 ITLQVLVDAP GNISCLWVFK HSSLNCQPHF DLQNRGVVSM VILKMTETQA ENSBTAP00000024717/1-987 ITLQVLVSAP GNTSCLWVFK HRYLNCQPHL DLQNRGVFSM VILKMTETQA BACU000122/1-908 ITLQVLVTTP GNISCLWVFK HSSLNCQPHF DLQNRGVVSM VILKMTETQA ENSTTRP00000002636/1-980 ITLQVLVTTP GNISCLWVFK HSSLNCQPHF DLQNRGVVSM VILKMTETQA 151 200 bmy_09564T0/1-741 GEYLLFIQSE ATNYTVLFTV SLRNTLLYTL RRPYFRKMEN QDALVCISES ENSP00000241453/1-993 GEYLLFIQSE ATNYTILFTV SIRNTLLYTL RRPYFRKMEN QDALVCISES ENSBTAP00000024717/1-987 GEYRLLIQSA ATNYTVLFTV SLRNTLLYTL RKPYFRKMEN QDALVCISES BACU000122/1-908 GEYLLFIQSE ATNYTVLFTV SIRNTLLYTL RRPYFRKMEN QDALVCISES ENSTTRP00000002636/1-980 GEYLLFIQSE ATNYTVLFTV SIRNTLLYTL RRPYFRKMEN QDALVCISES 201 250 bmy_09564T0/1-741 IPEPTVEWVF CDSQSD---- ---------- ---------- -RCCARNELG ENSP00000241453/1-993 VPEPIVEWVL CDSQGESCKE ESPAVVKKEE KVLHELFGTD IRCCARNELG ENSBTAP00000024717/1-987 VPEPTVEWVF CDSQSDSCKG ESPAVVTKEE SVLHELFGTD IRCCARNELG BACU000122/1-908 IPEPTVEWVF CDSQSDSCKG ESPAVITKEE SVLHELFGTD IRCCARNELG ENSTTRP00000002636/1-980 IPEPTVEWVF CDSQSDSCKG ESPAVITKEA SVLHELFGTD IRCCARNELG 251 300 bmy_09564T0/1-741 RECTKLFTID LNQTPQTTPP QLFLKVGEPL WIRCKAVHVN HGFGLSWELE ENSP00000241453/1-993 RECTRLFTID LNQTPQTTLP QLFLKVGEPL WIRCKAVHVN HGFGLTWELE ENSBTAP00000024717/1-987 RECTKLFTID LNQTPQTTPP QLFLKVGEPL WIRCKAIHVN HGFGLSWELE BACU000122/1-908 RECTKLFTID LNQTPQTTPP QLFLKVGEPL WIRCKAVHVN HGFGLSWELE ENSTTRP00000002636/1-980 RECTKLFTID LNQTPQTTPP QLFLKVGEPL WIRCKAVHVN HGFGLSWELE 301 350 bmy_09564T0/1-741 NKTLEEGSYF EMSTYSTNRT MIRILFAFVS SVGRNDTGYY TCSSSEHPSK ENSP00000241453/1-993 NKALEEGNYF EMSTYSTNRT MIRILFAFVS SVARNDTGYY TCSSSKHPSQ ENSBTAP00000024717/1-987 NKALEEGSYF EMSTYSTNRT MIRILFAFVS SVGRNDTGYY TCSSSEHPSK BACU000122/1-908 NKTLEEGSYF EMSTYSTNRT MIRILFAFVS SVGRNDTGYY TCSSSEHPSK ENSTTRP00000002636/1-980 NKALEEGSYF EMSTYSTNRT MIRILFAFVS SVGRNDTGYY TCSSSEHPSK 351 400 bmy_09564T0/1-741 SALVTILEKG FINASKSSED YEIDQYEEFC FSVRFKAYPQ IRCTWTFSRK ENSP00000241453/1-993 SALVTIVEKG FINATNSSED YEIDQYEEFC FSVRFKAYPQ IRCTWTFSRK ENSBTAP00000024717/1-987 SALVTILEKG FINVSKSNED YEIDQYEEFC FSVRFKAYPQ IRCTWTFSRK BACU000122/1-908 SALVTILEKG FINASKSSED YEIDQYEEFC FSVRFKAYPQ IRCTWSFSRK ENSTTRP00000002636/1-980 SALVTILEKG FINASKSSED YEIDQYEEFC FSVRFKAYPQ IRCTWTFSRK 401 450 bmy_09564T0/1-741 SFPCEQSGLD DGYSISKFCN HKHQPGQYIF HAENDDAQFT KMFTLNIRRK ENSP00000241453/1-993 SFPCEQKGLD NGYSISKFCN HKHQPGEYIF HAENDDAQFT KMFTLNIRRK ENSBTAP00000024717/1-987 SFPCEQSGLD DGYSISKFCN HKHQPGQYIF HAENDDAQFT KEFTLNIRRK BACU000122/1-908 SFPCEQSGLD DGYSISKFCN HKHQPGQYIF HAENDDAQFT KMFTLNIRRK ENSTTRP00000002636/1-980 AFPCEQSGLD DGYSISKFCN HKHQPGQYIF HAENDDAQFT KMFTLNIRRK 451 500 bmy_09564T0/1-741 PQVLAEASAS QASCSSDGYP LPSWTWKKCS DKSPNCTEEI TEGIWNKKAN ENSP00000241453/1-993 PQVLAEASAS QASCFSDGYP LPSWTWKKCS DKSPNCTEEI TEGVWNRKAN ENSBTAP00000024717/1-987 PQVLAEASAS QASCSSDGYP IPSWTWKKCS DKSPNCTEEI TEGIWNKKAN BACU000122/1-908 PQVLAEASAS QASCSSDGYP LPSWTWKKCS DKSPNCTEEI TEGIWNKKAN ENSTTRP00000002636/1-980 PQVLAEASAS QASCSSDGYP LPSWTWKKCS DKSPNCTEEI TEGIWNKKAN 501 550 bmy_09564T0/1-741 RKVFGQWISS STLNMSEAVK GFLVKCCAYN SLGTSCETIL LNSPGQH--- ENSP00000241453/1-993 RKVFGQWVSS STLNMSEAIK GFLVKCCAYN SLGTSCETIL LNSPGPFPFI ENSBTAP00000024717/1-987 RKVFGQWISS STLNMSEAVK GFLVKCCAYN ALGTSCETIL LSSPGPFPSI BACU000122/1-908 RKVFGQWISS STLNMSEAVK GFLVKCCAYN SLGTSCETIL LNSPGRFPFI ENSTTRP00000002636/1-980 RKVFGQWISS S-LNMSEAVK GFLVKCCAYN SLGTSCETIL LNSPGPFPFI 551 600 bmy_09564T0/1-741 ---------- ---------- -LILCNNW-- ---------- ---------- ENSP00000241453/1-993 QDNISFYATI GVCLLFIVVL TLLICHKY-K KQFRYESQLQ MVQVTGSSDN ENSBTAP00000024717/1-987 QDNISFYATI GLCLPFIAVL TMLICHKYKK KQFRYESQLQ MVQVTGSLDN BACU000122/1-908 QDNISFYATI GLCLPFIAVL TMLICHKY-K KQFRYESQLQ MVQVTGSLDN ENSTTRP00000002636/1-980 QDNISFYATV GLCLPFIAVL TMLICHKY-K KQFRYESQLQ MVQVTGSLDN 601 650 bmy_09564T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSP00000241453/1-993 EYFYVDFREY EYDLKWEFPR ENLEFGKVLG SGAFGKVMNA TAYGISKTGV ENSBTAP00000024717/1-987 EYLYIDFREY EYDLKWEFPR ENLEFGKVLG SGAFGKVMNA TAYGISKTGV BACU000122/1-908 EYFYIDFREY EYDLKWEFPR ENLEFGKVLG SGAFGKVMNA TAYGISKTGV ENSTTRP00000002636/1-980 EYFYIDFREY EYDLKWEFPR ENLEFGKVLG SGAFGKVMNA TAYGISKTGV 651 700 bmy_09564T0/1-741 ---------- ---------- ------PLSS LYCRFNHANL IKTVTISGPI ENSP00000241453/1-993 SIQVAVKMLK EKADSSEREA LMSELKMMTQ LGSHENIVNL LGACTLSGPI ENSBTAP00000024717/1-987 SIQVAVKMLK EKADSSEREA LMSELKMMTH LGSHENIVNL LGACTLSGPI BACU000122/1-908 SIQVAVKMLK EKADSSEREA LMSELKMMTH LGSHENIVNL LGACTLS--- ENSTTRP00000002636/1-980 SIQVAVKMLK EKADSSEREA LMSELKMMTH LGSHENIVNL LGACTLSGPI 701 750 bmy_09564T0/1-741 YLIFEYCCYG DLLNYLRSKR EKFHRTWTEI FKEHNFSFYP TFQSPPNSSM ENSP00000241453/1-993 YLIFEYCCYG DLLNYLRSKR EKFHRTWTEI FKEHNFSFYP TFQSHPNSSM ENSBTAP00000024717/1-987 YLIFEYCCYG DLLNYLRSKR EKFHRTWTEI FKEHNFSFYP TFQSHPNSSM BACU000122/1-908 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002636/1-980 YLIFEYCCYG DLLNYLRSKR EKFHRTWTEI FKEHNFSFYP TFQSPPNSSM 751 800 bmy_09564T0/1-741 PGSREVQIQP DSDPVSGFNG NSFQSEDEIE YENQKRLEEE EDLNVLTFED ENSP00000241453/1-993 PGSREVQIHP DSDQISGLHG NSFHSEDEIE YENQKRLEEE EDLNVLTFED ENSBTAP00000024717/1-987 PGSREVQIHP DSDPISGFNG NSFQSEDEIE YENQKRLEEE EDLNVLTFED BACU000122/1-908 ---------- ---------- ------DEIE YENQKRLEEE EDLNVLTFED ENSTTRP00000002636/1-980 PGSREVQIHP DSDPVSGFNG NSFQSEDEIE YENQKRLEEE EDLNVLTFED 801 850 bmy_09564T0/1-741 LLCFAYQVAK GMEFLEFKSL LKSVFXSRSQ LESPRML--- --HGLL---- ENSP00000241453/1-993 LLCFAYQVAK GMEFLEFKSC VHRDLAARNV LVTHGKVVKI CDFGLARDIM ENSBTAP00000024717/1-987 LLCFAYQVAK GMEFLEFKSC LHRDLAARNV LVTHGKVAKI ADFGLARDIM BACU000122/1-908 LLCFAYQVAK GMEFLEFKSC VHRDLAARNV LVTHGKMVKI GDFGLARDIM ENSTTRP00000002636/1-980 LLCFAYQVAK GMEFLEFKSC VHRDLAARNV LVTHGKVVKI GDFGLARDIM 851 900 bmy_09564T0/1-741 --ANYSIKTS ---------- ----AACEPI SAIRLATFCP RFLPFHYFSL ENSP00000241453/1-993 SDSNYVVRGN ---ARLPVKW MAPESLFEGI YTIKSDVWSY GILLWEIFSL ENSBTAP00000024717/1-987 SDSNYVIRGN ---ARLPVKW MAPESLFEGI YTIKSDVWSY GILLWEIFSL BACU000122/1-908 SDSNYVIRGN ---ARLPVKW MAPESLFEGI YTIKSDVWSY GILLWEIFSL ENSTTRP00000002636/1-980 SDSNYVIRGN VRLARLPVKW MAPESLFEGI YTIKSDVWSY GILLWEIFSL 901 950 bmy_09564T0/1-741 ----FPQL-- ---------- ---------- ---------- ---------- ENSP00000241453/1-993 GVNPYPGIPV DANFYKLIQN GFKMDQPFYA TEEIYIIMQS CWAFDSRKRP ENSBTAP00000024717/1-987 GVNPYPGIPA DANFYKLIQS GFKMDQPFYA TEEIYFIMQS CWAFDSRKRP BACU000122/1-908 GVNPYPGIPA DAKFYKLIQS GFKMDQPFYA TEEIYFIMQS CWAFDSRKRP ENSTTRP00000002636/1-980 GVNPYPGIPA DANFYKLIQS GFKMDQPFYA TEEIYFIMQS CWAFDSRKRP 951 1000 bmy_09564T0/1-741 -FPLLFPLVS ---------- ---------- ---------- ---------- ENSP00000241453/1-993 SFPNLTSFLG CQLADAEEAM YQNVDGRVSE CPHTYQNRRP FSREMDLGLL ENSBTAP00000024717/1-987 SFPNLTSFLG CQLADAEEAM YQNMDGRVSE RPSVYQNRRP YSREVDLGLP BACU000122/1-908 SFPNLTSFLG CQLADAEEAM YQNVDGHVLE RPSVYQNRRP YSREVDSGLP ENSTTRP00000002636/1-980 SFPNLTSFLG CQLADAEEAM YQNMDGHVSE RPSVYQNRRP YSREVDSGLP 1001 1050 bmy_09564T0/1-741 --------- ENSP00000241453/1-993 SPQAQVEDS ENSBTAP00000024717/1-987 SPQVHSEDS BACU000122/1-908 SPRAHVEDS ENSTTRP00000002636/1-980 SPRAHIDDS