KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:58 2014 Check: 00 .. Name: ENSTTRP00000008086/1-701 Len: 780 Check: 5587 Weight: 1.00 Name: bmy_13525T0/1-576 Len: 780 Check: 1525 Weight: 1.00 Name: ENSP00000263918/1-780 Len: 780 Check: 1137 Weight: 1.00 Name: ENSBTAP00000024742/1-780 Len: 780 Check: 2907 Weight: 1.00 Name: BACU001632/1-563 Len: 780 Check: 7422 Weight: 1.00 // 1 50 ENSTTRP00000008086/1-701 ---------- ---------- ---------- ---------- ---------- bmy_13525T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSP00000263918/1-780 MDEQAGPGVF FSNNHPGAGG AKGLGPLAEA AAAGDGAAAA GAARAQYSLP ENSBTAP00000024742/1-780 MDEQAGPGVF FSNNHPAAGG AKGLGPLAEA AAAGDGVAAA GAARAQYSLP BACU001632/1-563 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008086/1-701 ---------- ---------- --------AQ IAFLQGERKG QENLKKDLVR bmy_13525T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSP00000263918/1-780 GILHFLQHEW ARFEVERAQW EVERAELQAQ IAFLQGERKG QENLKKDLVR ENSBTAP00000024742/1-780 GILHFLQHEW ARFEVERAQW EVERAELQAQ IAFLQGERKG QENLKKDLVR BACU001632/1-563 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008086/1-701 RIKMLEYALK QERAKYHKLK YGTELNQGDM KPPSYDSXXX XXXXXXXXXX bmy_13525T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSP00000263918/1-780 RIKMLEYALK QERAKYHKLK YGTELNQGDM KPPSYDSDEG NETEVQPQQN ENSBTAP00000024742/1-780 RIKMLEYALK QERAKYHKLK YGTELNQGDM KPPSYDSDEG NETEVQPQQN BACU001632/1-563 ---MLEYALK QERAKYHKLK YGTELNQGDM KPPSYDSDEG NETEVQPQQN 151 200 ENSTTRP00000008086/1-701 XXXXXXXXXX XXXXYLQEVG YTDTILDVKS KRVRALLGFS SDVTDREDDK bmy_13525T0/1-576 ------MKIL FTHRYLQEVG YTDTILDVKS KRVQALLGFS SEVTDREDVK ENSP00000263918/1-780 SQLMWKQGRQ LLRQYLQEVG YTDTILDVKS KRVRALLGFS SDVTDREDDK ENSBTAP00000024742/1-780 SQLMWKQGRQ LLRQYLQEVG YTDTILDVKS KRVRALLGFS SDVTDREDDK BACU001632/1-563 SQLMWKQGRQ LLRQYLQEVG YTDTILDVKS KRVRALLGFS SDVTDREDDK 201 250 ENSTTRP00000008086/1-701 NQDSVINGTE AEVKETAMIG KSELTDSASV LDNFKFLESA AADFSDEDED bmy_13525T0/1-576 NQDSVINGTE AEVKETAMIG KSELTDSASV LDNFKFLESA AADFSDEDED ENSP00000263918/1-780 NQDSVVNGTE AEVKETAMIA KSELTDSASV LDNFKFLESA AADFSDEDED ENSBTAP00000024742/1-780 NQDSVINGTE AEVKETAMIG KSELTDSASV LENFKFLESA AADFSDEDED BACU001632/1-563 NQDSVINGTE AEVKETAMIG KSELTDSASV LDNFKFLESA AADFSDEDED 251 300 ENSTTRP00000008086/1-701 DDIDGREKSI IDTSTIVRKK VLPDSSEDRD TKEALKEFDF LVTSEEGDNE bmy_13525T0/1-576 DDIDGREKSI IDTSTIVRKK VLPDSSEDRD TKEALKEFDF LVTSEEGDNE ENSP00000263918/1-780 DDVDGREKSV IDTSTIVRKK ALPDSGEDRD TKEALKEFDF LVTSEEGDNE ENSBTAP00000024742/1-780 DDIDGREKSI IDTSTIVRKK VLPDSSEDRD TKEALKEFDF LVTSEEGDND BACU001632/1-563 DDIDGREKSI IDTSTIVRKK VLSDSSEDRD TKEALKEFDF LVTSEEGDNE 301 350 ENSTTRP00000008086/1-701 SRSAGDGTDW XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPN bmy_13525T0/1-576 SRSAGDGTDW EKEDQCLMPE AWNVDQGVIT KLKEQYKKER KGKKGVK--- ENSP00000263918/1-780 SRSAGDGTDW EKEDQCLMPE AWNVDQGVIT KLKEQYKKER KGKKGVKRPN ENSBTAP00000024742/1-780 SRSAGDGTDW EKEDQCLMPE AWNVDQGVIT KLKEQYKKER KGKKGVKRPN BACU001632/1-563 SRSAGDGTDW EKEDQCLMPE AWNVDQGVIT KLKEQYKKER KGKKGVKRPN 351 400 ENSTTRP00000008086/1-701 RSKLQDMLAN LRDVDELPSL QPSVGSPSRP SSSRLPEHEI NRADEVEALT bmy_13525T0/1-576 ---------- ---------- ---------- ---------- -----MEALT ENSP00000263918/1-780 RSKLQDMLAN LRDVDELPSL QPSVGSPSRP SSSRLPEHEI NRADEVEALT ENSBTAP00000024742/1-780 RSKLQDMLAN LRDVDELSSL QPSVGSPSRP SSSRLPEHEI NRADEVEALT BACU001632/1-563 RSKLQDMLAN LRDVDELPSL QPSVGSPSRP SSSRLPEHEI NRADEVEALT 401 450 ENSTTRP00000008086/1-701 FPPSSGKSFI MGADEALESE LGLGELAGLT VANEADSLTY DIANNKDALR bmy_13525T0/1-576 FPPSSGKSFI MGADEALESE LGLGELAGLT VANEADSLTY DIANNKDALR ENSP00000263918/1-780 FPPSSGKSFI MGADEALESE LGLGELAGLT VANEADSLTY DIANNKDALR ENSBTAP00000024742/1-780 FPPSSGKSFI MGADEALESE LGLGELAGLT VANEADSLTY DIANNKDALR BACU001632/1-563 FPPSSGKSFI MGADEALESE LGLGELAGLT VANEADSLTY DIANNKDALR 451 500 ENSTTRP00000008086/1-701 KTWNPKFTLR SHFDGIRALA FHPIEPVLIT ASEDHTLKMW NLQKTAPAKX bmy_13525T0/1-576 KTWNPKFTLR SHFDGIRALA FHPIEPVLIT ASEDHTLKMW NLQKTAPAKK ENSP00000263918/1-780 KTWNPKFTLR SHFDGIRALA FHPIEPVLIT ASEDHTLKMW NLQKTAPAKK ENSBTAP00000024742/1-780 KTWNPKFTLR SHFDGIRALA FHPTEPVLIT ASEDHTLKMW NLQKTAPAKK BACU001632/1-563 KTWNPKFTLR SHFDGIRALA FHPVEPVLIT ASEDHTLKMW NLQKTAPAKK 501 550 ENSTTRP00000008086/1-701 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13525T0/1-576 STSLDVEPIY TFRAHKGPVL CVVMSSNGEQ CYSGGTDGLI QGWNTTNPNI ENSP00000263918/1-780 STSLDVEPIY TFRAHKGPVL CVVMSSNGEQ CYSGGTDGLI QGWNTTNPNI ENSBTAP00000024742/1-780 STSLDVEPIY TFRAHKGPVL CVVMSSSGEQ CYSGGADGLI QSWNTTNPNI BACU001632/1-563 STSLDVEPIY TFRAHKGPVL CVVMSSNGEQ CYSGGTDGLI QGWNTTNPNI 551 600 ENSTTRP00000008086/1-701 XXXESXXXXX XX-XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13525T0/1-576 DPYDSYDPSV LRGPLLGHTD AVWGLAYSAA HQRLLSCSAD GTLRLWNTTE ENSP00000263918/1-780 DPYDSYDPSV LRGPLLGHTD AVWGLAYSAA HQRLLSCSAD GTLRLWNTTE ENSBTAP00000024742/1-780 DPYDSYDPSV LRGPLLGHTD AVWGLAYSAA HQRLLSCSAD GTLRLWNTTE BACU001632/1-563 DPYDSYDPSV LRGPLLGHTD AVWGLAYSAA HQRLLSCSAD GTLRLWNTTE 601 650 ENSTTRP00000008086/1-701 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13525T0/1-576 AAPALSVFNN NQELGIPASV DLVSSDPSHM VASFSKGYTS IFNMETQQRI ENSP00000263918/1-780 VAPALSVFND TKELGIPASV DLVSSDPSHM VASFSKGYTS IFNMETQQRI ENSBTAP00000024742/1-780 VAPALSVFND NQELGVPASV DLVSSDPSHM VASFSKGYTS IFNMETQQRI BACU001632/1-563 AAPALSVFND NQELGIPASV DLVSSDPSHM VASFSKGYTS IFNMETQQRI 651 700 ENSTTRP00000008086/1-701 XXXXXXXXXX ATSSCQINRV ISHPTLPISI TAHEDRHIKF YDNNTGKLIH bmy_13525T0/1-576 LTLESNLDST ANSSCQINRV ISHPTLPISI TAHEDRHIKF YDNNTGKLIH ENSP00000263918/1-780 LTLESNVDTT ANSSCQINRV ISHPTLPISI TAHEDRHIKF YDNNTGKLIH ENSBTAP00000024742/1-780 LTLESNLDST ANSSCQINRV ISHPTLPISI TAHEDRHIKF YDNNTGKLIH BACU001632/1-563 LTLESNLDSS M--------- ---------- ---------- YTN------- 701 750 ENSTTRP00000008086/1-701 SMVAHLEAVT SLAVDPNGLY LMSGSHDCSI RLWNLESKTC IQEFTAHRKK bmy_13525T0/1-576 SMVAHLEAVT SLAVDPNGLY LMSGSHDCSI RLWNLESKTC IQEFTAHRKK ENSP00000263918/1-780 SMVAHLEAVT SLAVDPNGLY LMSGSHDCSI RLWNLESKTC IQEFTAHRKK ENSBTAP00000024742/1-780 SMVAHLEAVT SLAVDPNGLY LMSGSHDCSI RLWNLESKTC IQEFTAHRKK BACU001632/1-563 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000008086/1-701 FEESIHDVAF HPSKCYIASA GADALAKVFV bmy_13525T0/1-576 FEESIHDVAF HPSKCYIASA GADALAKVFV ENSP00000263918/1-780 FEESIHDVAF HPSKCYIASA GADALAKVFV ENSBTAP00000024742/1-780 FEESIHDVAF HPSKCYIASA GADALAKVFV BACU001632/1-563 ---------- ---------- --------FK