KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:59 2014 Check: 00 .. Name: ENSBTAP00000024750/1-1180 Len: 1360 Check: 6675 Weight: 1.00 Name: ENSP00000452414/1-1174 Len: 1360 Check: 9947 Weight: 1.00 Name: BACU013151/1-1183 Len: 1360 Check: 8020 Weight: 1.00 Name: bmy_11894T0/1-1244 Len: 1360 Check: 3961 Weight: 1.00 Name: ENSTTRP00000012204/1-1169 Len: 1360 Check: 2844 Weight: 1.00 // 1 50 ENSBTAP00000024750/1-1180 --LPFGLKLK RTRRYTVSSK SCLVARIQLL NNEFVEFTLS VESTGQESLE ENSP00000452414/1-1174 MPLPFGLKLK RTRRYTVSSK SCLVARIQLL NNEFVEFTLS VESTGQESLE BACU013151/1-1183 MPLPFGLKLK RTRRYTVSSK SCLVARIQLL NNEFVEFTLS VESTGQESLE bmy_11894T0/1-1244 MPLPFGLKLK RTRRYTVSSK SCLVARIQLL NNEFVEFTLS VESTGQESLE ENSTTRP00000012204/1-1169 MPLPFGLKLK RTRRYTVSSK SCLVARIQLL NNEFVEFTLS VESTGQESLE 51 100 ENSBTAP00000024750/1-1180 AVAQRLELRE ---------- ---------- ---------- --------IT ENSP00000452414/1-1174 AVAQRLELRE ---------- ---------- ---------- --------VT BACU013151/1-1183 AVAQRLELRE ---------- ---------- ---------- --------IT bmy_11894T0/1-1244 AVAQRLELRE HLIVQDDAKF ERSDKWINTS QNSTRSNPSY AYYKILITVT ENSTTRP00000012204/1-1169 AVAQRLELRE ---------- ---------- ---------- --------IT 101 150 ENSBTAP00000024750/1-1180 YFSLWYYNKQ NQRRWVDLEK PLKKQLDKHA LEPTVYFGVV FYVPSVSQLQ ENSP00000452414/1-1174 YFSLWYYNKQ NQRRWVDLEK PLKKQLDKYA LEPTVYFGVV FYVPSVSQLQ BACU013151/1-1183 YFSLWYYNKQ NQRRWVDLEK PLKKQLDKYA LEPTVYFGVV FYVPSVSQLQ bmy_11894T0/1-1244 YFSLWYYNKQ NQRRWVDLEK PLKKQLDKYA LEPTVYFGVV FYVPSVSQLQ ENSTTRP00000012204/1-1169 YFSLWYYNKQ NQRRWVDLEK PLKKQLDKYA LEPTVYFGVV FYVPSVSQLQ 151 200 ENSBTAP00000024750/1-1180 QEITSRYQYY LQLKKDILEG NIPCTLEQAI QLAGLAVQAD FGDFDQYESQ ENSP00000452414/1-1174 QEIT-RYQYY LQLKKDILEG SIPCTLEQAI QLAGLAVQAD FGDFDQYESQ BACU013151/1-1183 QEIT-RYQYY LQLKKDILEG NIPCTLEQAI QLAGLAVQAD FGDFDQYESQ bmy_11894T0/1-1244 QEIT-RYQYY LQLKKDILEG NIPCTLEQAI QLAGLAVQAD FGDFDQYESQ ENSTTRP00000012204/1-1169 QEIT-RYQYY LQLKKDILEG NIPCTLEQAI QLAGLAVQAD FGDFDQYESQ 201 250 ENSBTAP00000024750/1-1180 DFLQKFALLP V--------- ---------- ---------E WLQDEKVLEE ENSP00000452414/1-1174 DFLQKFALFP V--------- ---------- ---------G WLQDEKVLEE BACU013151/1-1183 DFLQKFALLP V--------- ---------- ---------E WLQDEKVLEE bmy_11894T0/1-1244 DFLQKFALLP VSSGPCKPTE TEGSVVIGLQ PEKFILCSDE WLQDEKVLEE ENSTTRP00000012204/1-1169 DFLQKFALLP V--------- ---------- ---------E WLQDEKVLEE 251 300 ENSBTAP00000024750/1-1180 ATQKVALLHQ KYRGLTAPDA EMLYMQEVER MDGYGEESYP AKDSQGSDIS ENSP00000452414/1-1174 ATQKVALLHQ KYRGLTAPDA EMLYMQEVER MDGYGEESYP AKDSQGSDIS BACU013151/1-1183 ATQKVALLHQ KYRGLTAPDA EMLYMQEIER MDGYGEESYP AKDSQGSDIS bmy_11894T0/1-1244 ATQKVALLHQ KYRGLTAPDA EMLYMQEIER MDGYGEESYP AKDSQGSDIS ENSTTRP00000012204/1-1169 ATQKVALLHQ KYRGLTAPDA EMLYMQEIER MDGYGEESYP AKDSQGSDIS 301 350 ENSBTAP00000024750/1-1180 IGACLEGVFV KHKSGRPPVV FRWHDIANMS HNKSFFALEL ANKEETIQFQ ENSP00000452414/1-1174 IGACLEGIFV KHKNGRHPVV FRWHDIANMS HNKSFFALEL ANKEETIQFQ BACU013151/1-1183 IGACLEGIFV KHKNGRPPVI FRWHDIANMS HNKSFFALEL SNKEETIQFQ bmy_11894T0/1-1244 IGACLEGIFV KHKNGRPPVI FRWHDIANMS HNKSFFALEL SNKEETIQFQ ENSTTRP00000012204/1-1169 IGACLEGIFV KHKNGRPPVI FRWHDIANMS HNKSFFALEL SNKEETIQFQ 351 400 ENSBTAP00000024750/1-1180 TEDMETAKYV WRLCVARHKF YRLNQCSLQT QTVIVNPVRR RSSSRMSLPK ENSP00000452414/1-1174 TEDMETAKYI WRLCVARHKF YRLNQCNLQT QTVTVNPIRR RSSSRMSLPK BACU013151/1-1183 T--------- ---------- ---------- ---------- --------PK bmy_11894T0/1-1244 TEDMETAKYV WRLCVARHKF YRLNQCSLQT QTVIVNPIRR RSSSRMSLPK ENSTTRP00000012204/1-1169 TEDMETAKYV WRLCVARHKF YRLNQCSLQT QTVIVNPIRR RSSSRMSLPK 401 450 ENSBTAP00000024750/1-1180 PQPYAMAAPP QLHYNGHYTE PYTSSLDNLF VTNQNGFYGH SQTSLDRAQV ENSP00000452414/1-1174 PQPYVMPPPP QLHYNGHYTE PYASSQDNLF VPNQNGYYCH SQTSLDRAQI BACU013151/1-1183 PQPYVMPPPP QLHYNGHYTE PYTSSQDNLF VTNQNGYYCH SQTSLDRAQI bmy_11894T0/1-1244 PQPYVMPPPP QLHYNGHYTE PYTSSQDNLF VTNQNGYYCH SQTSLDRAQI ENSTTRP00000012204/1-1169 PQPYVMPPPP QLHYNGHYTE PYTSSQDNLF VTNQNGYYCH SQTSLDRAQI 451 500 ENSBTAP00000024750/1-1180 ELGGRVRNGS VYSAHSTSSL NSPQPYLQPS PGSSNPSITG SDVLRPDYVP ENSP00000452414/1-1174 DLNGRIRNGS VYSAHSTNSL NNPQPYLQPS PMSSNPSITG SDVMRPDYLP BACU013151/1-1183 DLSGRLRNGS VYSAHSTSSL NNPQPYLQPS PMSSNPSITG SDIMRPDYVP bmy_11894T0/1-1244 DLSGRLRNGS VYSAHSTSSL NNPQPYLQPS PMSSNPSITG SDIMRPDYVP ENSTTRP00000012204/1-1169 DLSGRLRNGS VYSAHSTSSL NNPQPYLQPS PMSSNPSITG SDIMRPDYVP 501 550 ENSBTAP00000024750/1-1180 SHRHSALIPP SYRPTPDYET VMKQLQRGLA PAERQSRSLR NL-------- ENSP00000452414/1-1174 SHRHSAVIPP SYRPTPDYET VMKQLNRGLV HAERQSHSLR NLNIGSSYAY BACU013151/1-1183 SHRHSALIPP SYRPTPDYET VMKQLHRGLA PAERQSRSLR NLNIGSSYAY bmy_11894T0/1-1244 SHRHSALIPP SYRPTPDYET VMKQLHRGLA PAERQSRSLR NLNIGSSYAY ENSTTRP00000012204/1-1169 SHRHSALIPP SYRPTPDYET VMKQLHRGLA PAERQSHSLR NLNIGSSYAY 551 600 ENSBTAP00000024750/1-1180 ----SLVYSQ PEIREHARPG SPPMAPCAFS LSHSFHSPAP YPYASAAGRR ENSP00000452414/1-1174 SRPAALVYSQ PEIREHAQLP SPAAAHCPFS LSYSFHSPSP YPY--PAERR BACU013151/1-1183 SRPDALVYSQ PEIREHAHFS SPPSAHYPFN LNYSFHSQAP YPY--PAERR bmy_11894T0/1-1244 SRPDALVYSQ PEIREHAHFS SPPSAHYPFN LNYSFHSQAP YPY--PTERR ENSTTRP00000012204/1-1169 SRPDALVYSQ PEIREHAHFS SPPSAHYPFN LNYSFHSQAP YPY--PAERR 601 650 ENSBTAP00000024750/1-1180 PGLGAVSVPE LTNAQLQARD CPAPSILRTQ VYRPPPPYPH PRPANSTPDL ENSP00000452414/1-1174 PVVGAVSVPE LTNAQLQAQD YPSPNIMRTQ VYRPPPPYPP PRPANSTPDL BACU013151/1-1183 PVVGAVSVPE LTNVQLQARD YPAPNIMRTQ VYRPPPPYPY PRPANSTPDL bmy_11894T0/1-1244 PVVGAVSVPE LTNVQLQARD YPAPNIMRTQ VYRPPPPYPY PRPANSTPDL ENSTTRP00000012204/1-1169 PVVGAVSVPE LTNVQLQARD YPAPNIMRTQ VYRPPPPYPY PRPANSTPDL 651 700 ENSBTAP00000024750/1-1180 SRQPPISSSN PDLITRRVHH SVQTFQEDSL PVAHSLQEVS EPLTAARRAR ENSP00000452414/1-1174 SRHLYISSSN PDLITRRVHH SVQTFQEDSL PVAHSLQEVS EPLTAARHAQ BACU013151/1-1183 SRHLYISSSN PDLITRRVHH SVQTFQEDSL PVAHSLQEVS EPLTSARHAQ bmy_11894T0/1-1244 SRHLYISSSN PDLITRRVHH SVQTFQEDSL PVAHSLQEVS EPLTSARHAQ ENSTTRP00000012204/1-1169 SRHLYISSSN PDLITRRVHH SVQTFQEDSL PVAHSLQEVS EPLTSARHAH 701 750 ENSBTAP00000024750/1-1180 LQKRNSVELA GLAHGLEGLR LQERAAPALA AG-------- --------ER ENSP00000452414/1-1174 LHKRNSIEVA GLSHGLEGLR LKERTLSASA AEVAPRAVSV GSQPSVFTER BACU013151/1-1183 LQKRNSIEIA GLTHGFEGLR LKERTMSASA ADVAPRAVSA GSQPNVVTER bmy_11894T0/1-1244 LQKRNSIEIA GLTHGFEGLR LKERTMSASA ADVAPRAVSA GSQPNVVTER ENSTTRP00000012204/1-1169 LQKRNSIEIA GLTHGFEGLR LKERTMSASA ADVAPRAVSA GSQPNVVTER 751 800 ENSBTAP00000024750/1-1180 ALRAEDCAAG LRGSLRGGHG KSLSDATVLI HSSDEDEDED PEEGPA---- ENSP00000452414/1-1174 TQREGPEEA- --EGLRYGHK KSLSDATMLI HSSEEEEDED FEEESGARA- BACU013151/1-1183 TKREEEDEH- --ESLRYGHK KSLSDATMLI HSSEEEE-ED LEEERGARAQ bmy_11894T0/1-1244 TKREEEDEQ- --ESLRYGHK KSLSDATMLI HSSEEEE-ED LEEERGARAQ ENSTTRP00000012204/1-1169 TKREEDDEQ- --QS-RYGHK KSLSDATMLI HSSEEEE-ED LEEGRGAGA- 801 850 ENSBTAP00000024750/1-1180 PPLGSRGGRP PDASHA---- ----APLAPG PLHILEPQA- ---------- ENSP00000452414/1-1174 PPARAREPRP GLAQDP---- PGCPRVLLAG PLHILEPKAH VPDAEKRMMD BACU013151/1-1183 PSPRAREPRA SYSQEAPLSS PHTPGAPAPC PLHILEPKAH VSEAERKGRD bmy_11894T0/1-1244 PSPRAREPRG SYSQEAPLSG PHTPGPPAAG PLHILEPKAH VTEAERKGRD ENSTTRP00000012204/1-1169 ------GPRG SYSQQAPRSG PHTPGPPAAG PTHSLEPKAH VIEAERKGRA 851 900 ENSBTAP00000024750/1-1180 --PGAAPGEG PRPRRDGLLS PSASESDLTT SGRYRARRDS LQKRPASDLL ENSP00000452414/1-1174 SSPVRTTAEA QRPWRDGLLM PSMSESDLTT SGRYRARRDS LKKRPVSDLL BACU013151/1-1183 GSPVPTPGEG PRPRRDGLLT PSMSESDLTT SGRYRARRDS LKKRPVSDLL bmy_11894T0/1-1244 GSPVPTPGEG PRPRRDGLLT PSMSESDLTT SGRYRARRDX LKKRPVSDLL ENSTTRP00000012204/1-1169 GSPVPTPGEG PRPRRDGLLT PFMSESDLTT SGRYRARRDS LKKRPVSDLL 901 950 ENSBTAP00000024750/1-1180 SAKKNAVEGL PPLGAASPRP KTRAPQMSLK ERLSQLRAQG RPLTQLFYAK ENSP00000452414/1-1174 SGKKNIVEGL PPLG------ ---------- ---------- ---------- BACU013151/1-1183 SGKKNVVEGL PPLG------ ---------- ---------- ---------- bmy_11894T0/1-1244 SGKKNVVEGL PPLG------ ---------- ---------- ---------- ENSTTRP00000012204/1-1169 SGKKNVVEGL PPLG------ ---------- ---------- ---------- 951 1000 ENSBTAP00000024750/1-1180 WFILGHKMIN MNLEGMKKSR GDAKKIGPLK LAALNGLSLS RLPLPDEEKD ENSP00000452414/1-1174 ---------- ----GMKKTR VDAKKIGPLK LAALNGLSLS RVPLPDEGKE BACU013151/1-1183 ---------- ----GMKKSR VDGKKIGPLK LAALNGLSLS RLPLPDEGRE bmy_11894T0/1-1244 ---------- ----GMKKSR VDAKKIGPLK LAALNGLSLS RLPLPDEGKE ENSTTRP00000012204/1-1169 ---------- ----GMKKSR VDAKKIGPLK LAALNGLSLS RLPLPDEG-E 1001 1050 ENSBTAP00000024750/1-1180 VPARATNDER CKILEQRLEQ GMVFTEYERI LKKRLVDGEC STARLPENAE ENSP00000452414/1-1174 VATRATNDER CKILEQRLEQ GMVFTEYERI LKKRLVDGEC STARLPENAE BACU013151/1-1183 VPARATNDER CKILEQRLEQ GMVFTEYERI LKKRLVDGEC STARLPENAE bmy_11894T0/1-1244 VPARATNDER CKILEQRLEQ GMVFTEYERI LKKRLVDGEC STARLPENAE ENSTTRP00000012204/1-1169 VPARATNDER CKILEQRLEQ GMVFTEYERI LKKRLVDGEC STARLPENAE 1051 1100 ENSBTAP00000024750/1-1180 RNRFQDVLPY DDARVELVPT KENNTGYINA SHIKVSVSGI EWDYIATQGP ENSP00000452414/1-1174 RNRFQDVLPY DDVRVELVPT KENNTGYINA SHIKVSVSGI EWDYIATQGP BACU013151/1-1183 RNRFQDVLPY DDARVELVPT KENNTGYINA SHIKVSVSGI EWDYIATQGP bmy_11894T0/1-1244 RNRFQDVLPY DDARVELVPT KENNTGYINA SHIKVSVSGI EWDYIATQGP ENSTTRP00000012204/1-1169 RNRFQDVLPY DDARVELVPT KENNTGYINA SHIKVSVSGI EWDYIATQGP 1101 1150 ENSBTAP00000024750/1-1180 LQNTCPDFWQ MVWEQGIAII AMVTAEEEGG REKSFRYWPR LGSRHNTVTY ENSP00000452414/1-1174 LQNTCQDFWQ MVWEQGIAII AMVTAEEEGG REKSFRYWPR LGSRHNTVTY BACU013151/1-1183 LQNTCQDFWQ MVWEQGIAII AMVTAEEEGG REKSFRYWPR LGSRHNTVTY bmy_11894T0/1-1244 LQNTCQDFWQ MVWEQGIAII AMVTAEEEGG REKSFRYWPR LGSRHNTVTY ENSTTRP00000012204/1-1169 LQNTCQDFWQ MVWEQGIAII AMVTAEEEGG REKSFRYWPR LGSRHNTVTY 1151 1200 ENSBTAP00000024750/1-1180 GRFKITTRFR TDSGCYATTG LKMKHLLSGQ ERTIWHLQYT DWPEHGCPED ENSP00000452414/1-1174 GRFKITTRFR TDSGCYATTG LKMKHLLTGQ ERTVWHLQYT DWPEHGCPED BACU013151/1-1183 GRFKITTRFR TDSGCYATTG LKMKHLLTGQ ERTVWHLQYT DWPEHGCPED bmy_11894T0/1-1244 GRFKITTRFR TDSGCYATTG LKMKHLLTGQ ERTVWHLQYT DWPEHGCPED ENSTTRP00000012204/1-1169 GRFKITTRFR TDSGCYATTG LKMKHLLTGQ ERTVWHLQYT DWPEHGCPED 1201 1250 ENSBTAP00000024750/1-1180 LKGFLSYLEE IQSVRRHTNS ASEPQSPNPP LLVHCSAGVG RTGVVILSEI ENSP00000452414/1-1174 LKGFLSYLEE IQSVRRHTNS TSDPQSPNPP LLVHCSAGVG RTGVVILSEI BACU013151/1-1183 LKGFLSYLEE IQSVRRHTNS TSEPKSPNPP LLVHCSAGVG RTGVVILSEI bmy_11894T0/1-1244 LKGFLSYLEE IQSVRRHTNS TSEPKSPNPP LLVHCSAGVG RTGVVILSEI ENSTTRP00000012204/1-1169 LKGFLSYLEE IQSVRRHTNS TSEPKSPNPP LLVHCSAGVG RTGVVILSEI 1251 1300 ENSBTAP00000024750/1-1180 MIACLEHNEA L--------- ---------- ---------- ---------- ENSP00000452414/1-1174 MIACLEHNEV L--------- ---------- ---------- ---------- BACU013151/1-1183 MIACLEHNEV LISSADEGRG ARHPTGAGHA EATENDDGAD ALPVHVRIPS bmy_11894T0/1-1244 MIACLEHNEV L--------- ---------- ---------- ---------- ENSTTRP00000012204/1-1169 MIACLEHNEV L--------- ---------- ---------- ---------- 1301 1350 ENSBTAP00000024750/1-1180 --DVPRVLDM ---------- ------LRRQ RMLMVQTLCQ YTFVYRVLIQ ENSP00000452414/1-1174 --DIPRVLDM ---------- ------LRQQ RMMLVQTLCQ YTFVYRVLIQ BACU013151/1-1183 SHSVPEKLKA HISSHNFLRG PDHVKRLQRK KKKCLRNSCS -------LLH bmy_11894T0/1-1244 --DIPRVLDM ---------- ------LRQQ RMMMVQTLCQ YTFVYRVLIQ ENSTTRP00000012204/1-1169 --DIPRVLDM ---------- ------LRQQ RMMMVQTLCQ YTFVYRVLIQ 1351 1400 ENSBTAP00000024750/1-1180 FLRSSRLI-- ENSP00000452414/1-1174 FLKSSRLI-- BACU013151/1-1183 SMHAERYIRT bmy_11894T0/1-1244 FLKSSRLI-- ENSTTRP00000012204/1-1169 FLKSSRLI--