KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:00 2014 Check: 00 .. Name: ENSP00000452126/1-458 Len: 465 Check: 4184 Weight: 1.00 Name: ENSBTAP00000024758/1-452 Len: 465 Check: 5313 Weight: 1.00 Name: ENSTTRP00000000405/1-450 Len: 465 Check: 8466 Weight: 1.00 Name: bmy_14071T0/1-421 Len: 465 Check: 2648 Weight: 1.00 Name: BACU000534/1-345 Len: 465 Check: 4209 Weight: 1.00 // 1 50 ENSP00000452126/1-458 MGGLGPRRAG TSRERLVVTG RAGWMGMGRG AGRSALGFWP TLAFLLCSFP ENSBTAP00000024758/1-452 --------NS SSRERLVVTG RAGWMGMGRG AGRPALGFWP TLAFLLCSFP ENSTTRP00000000405/1-450 --------MQ PPRERLVVTG RAGWMGMGRG AG-SALGFWP TFAFLLCSFP bmy_14071T0/1-421 ---------- ---------- --------MG VE-EAWAHHS QRDSASLPVS BACU000534/1-345 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000452126/1-458 AATSPCKILK CNSEFWSATS GSHAPASDDT PEFCAALRSY ALCTRRTART ENSBTAP00000024758/1-452 AASSSCKILK CNSEFWSATA GSHAPAADDA PEFCAALRTY ALCTRRTART ENSTTRP00000000405/1-450 AAISSCKILK CNSEFWSATA GSHAPAPDDA PEFCAALRTY ALCTRRTART bmy_14071T0/1-421 AATSSCKILK CNSEFWSATA GSHAPAPDDA PEFCAALRTY ALCTRRTART BACU000534/1-345 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000452126/1-458 CRGDLAYHSA VHGIEDLMSQ HNCSKDGPTS QPRLRTL-PP AGDSQERSDS ENSBTAP00000024758/1-452 CRGDLAYHSA VHGIEDLMSQ HSCSKDGPTS QPHLRTL-PP PGDSQERSDS ENSTTRP00000000405/1-450 CRGDLAYHSA VHGIEDLMSQ HNCSKDGPTS QPHLRTLPPP PGDSQERSDS bmy_14071T0/1-421 CRGDLAYHSA VHGIEDLMSQ HNCSKDGPTS QPHLRTLPPP PGDSQERSDS BACU000534/1-345 ---------- -------MSQ HNCSKDGPTS QPHLRTLPPP PRDSQERSDS 151 200 ENSP00000452126/1-458 PEICHYEKSF HKHSATPNYT HCGLFGDPHL RTFTDRFQTC KVQGAWPLID ENSBTAP00000024758/1-452 PEICHYEKSF HNRAAAPNYT HCGLFGDPHL RTFTDRFQTC KVQGAWPLID ENSTTRP00000000405/1-450 PEICHYEKSF HNRAAAPNYT HCGLFGDPHL RTFTDRFQTC KVQGAWPLID bmy_14071T0/1-421 PEICHYEKSF HNRAAAPNYT HCGLFGDPHL RTFTDRFQTC KVQGAWPLID BACU000534/1-345 PEICHYEKSF HNRAAAPNYT HCGLFGDPHL RTFTDRFQTC KVQGAWPLID 201 250 ENSP00000452126/1-458 NNYLNVQVTN TPVLPGSAAT ATSKLTIIFK NFQECVDQKV YQAEMDELPA ENSBTAP00000024758/1-452 NNYLNVQVTN TPVLPGSAAT ATSKLTIIFK NFQECVDQKV YQAEMDELPA ENSTTRP00000000405/1-450 NNYLNVQVTN TPVLPGSAAT ATSKLTIIFK NFQECVDQKV YQAEMDELPA bmy_14071T0/1-421 NNYLNVQVTN TP-------- ----LTIIFK NFQECVDQKV YQAEMDELPA BACU000534/1-345 NNYLNVQVTN TPVLPGSAAT ATSKLTIIFK NFQECVDQKV YQAEMDELPA 251 300 ENSP00000452126/1-458 AFVDGSKNGG DKHGANSLKI TEKVSGQHVE IQAKYIGTTI VVRQVGRYLT ENSBTAP00000024758/1-452 AFADGSKNGG EKHGANSLKI TEKVSGQHVE IQAKYIGTTI VVRQVGRYLT ENSTTRP00000000405/1-450 AFADGSKNGG DKHGANSLKI TEKVSGQHVE IQAKYIGTTI VVRQVGGYLT bmy_14071T0/1-421 AFADGSKNGG DKHGANSLKI TEKVSGQHVE IQAKYIGTTI VVRQVGGYLT BACU000534/1-345 AFADGSKNGG DKHGANSLKI TEKVSGQHVE IQAKYIGTTI VVRQVGGYLT 301 350 ENSP00000452126/1-458 FAVRMPEEVV NAVEDWDSQG LYLCLRGCPL NQQIDFQAFH TN-AEGTGAR ENSBTAP00000024758/1-452 FAVRMPEEVV NAVEDRDSQG LYLCLRGCPL NQQIDFQAFR AGAAEGPGAP ENSTTRP00000000405/1-450 FAVRMPEEVV NAVEDRDSQG LYLCLRGCPL NQQIDFQAFR AG-AESPGAH bmy_14071T0/1-421 FAVRMPEEVV NAVEDRDSQG LYLCLRGCPL NQQIDFQAFR AS-AEGPGAR BACU000534/1-345 FAVRMPEEVV NAVEDRDSQG LYLCLRGCPL NQQIDFQAFR AG-AEGPGAR 351 400 ENSP00000452126/1-458 RLAAASPAPT APETFPYETA VAKCKEKLPV EDLYYQACVF DLLTTGDVNF ENSBTAP00000024758/1-452 QPPAASPAPP APDTFPYETA VAKCKEKLPV EDLYYQACVF DLLTTGDVNF ENSTTRP00000000405/1-450 GLPAASPAPS APDTFPYETA VAKCKEKLPV EDLYYQACVF DLLTTGDVNF bmy_14071T0/1-421 RLPAASPAPS APDTFPYETA VAKCKEKLPV EDLYYQACVF DLLTTGDVNF BACU000534/1-345 RLPAASPAPS APDTFPYETA VAKCKEKLPV EDLYYQACVF DLLTTGDVNF 401 450 ENSP00000452126/1-458 TLAAYYALED VKMLHSNKDK LHLYDRTRDL PGR--AAAGL PLAPRPLLGA ENSBTAP00000024758/1-452 TLAAYYALED VKMLHSNKDK LHLYARTREP PGRAGAAPGP PPAPWPLLGT ENSTTRP00000000405/1-450 TLAAYYALED VKMLHSNKDK LHLYERTREP PGR-AAAAGL PPAPWPLLGS bmy_14071T0/1-421 TLAAYYALED VKMLHSNKDK LHLYERTREP PGR-AAAAGL PPAPWPLLGS BACU000534/1-345 TLAAYYALED VKMLHSNKDK LHLYERTREP PGR-GAAPGL PPGPWPLLGS 451 500 ENSP00000452126/1-458 LVPLLALLPV FC--- ENSBTAP00000024758/1-452 LL-LLALLPA LL--- ENSTTRP00000000405/1-450 LL-LLPLLPV CW--- bmy_14071T0/1-421 LL-LLSLFPV LLEAT BACU000534/1-345 LL-LLSLFPV LLEAA